Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0000716

Physical Location & Seq

Genomic Coordinates Forward (+)

57045965 .. 57047229

Gene Structure 1265 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG337600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGAAACTTCTATCTTCAAAGCTTTTGTTGAGTTGTTTGTGCGGGAATCCTCTGCTTTGAACCTCACGAGAACGAATGTGGTGAAGCCATTCGGTGTGTGCTACCTTGCGAAAGATATCGTGAGTACTCGTGCGGGGCCTGCTGTTCCGACCGTTGATCTCTTGATGGAGAGGGAGGATGTGATTTGGAGGATTCTTGGAACGAATTCAATGGTCAAGATTTCGAAGAAAGGAGGAGTGGAGTTGTGGTATTTGGGGTTTGTGGACGGTGAGGCCAAACCGAGGTCTTCGATCATGATCGGAGGGCATCAAATGGAGGATAATCTCCTGCAATTTGATCTCGAGTCCAAGAGGTTAGGGTTTAGCTCATCAGTTTTGCTCCAAGGAACAAAATATGCCGACTTCAATTTCGCTTCAGCAAAAGTTAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

144

Amino Acids

16.0

Weight (kDa)

7.82

Isoelectric Point (pI)

27.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	1 - 122	2.3e-32	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0000716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03220 AT1G03230
fragaria_vesca	FvH4_2g23780 FvH4_4g14611 FvH4_4g14611 FvH4_4g14640 FvH4_4g14660 FvH4_4g14670
malus_domestica	MD11G1287900.v1.1 MD13G1184500.v1.1 MD13G1184800.v1.1 MD13G1184900.v1.1 MD16G1185000.v1.1 MD16G1185100.v1.1 MD16G1185300.v1.1
prunus_persica	Prupe.1G152100_v2.0.a1 Prupe.1G152200_v2.0.a1 Prupe.8G243100_v2.0.a1
pyrus_communis	pycom11g25550 pycom13g15900 pycom13g15920 pycom16g15520
rosa_chinensis	RchiOBHm_Chr4g0417891 RchiOBHm_Chr4g0417921 RchiOBHm_Chr4g0417961 RchiOBHm_Chr4g0417971 RchiOBHm_Chr4g0417981 RchiOBHm_Chr6g0291301
rosa_laevigata	RLG00000007886 RLG00000007887 RLG00000007888 RLG00000007889 RLG00000007890 RLG00000012125
rosa_multiflora	Rmu_co8285195.1_g000001 Rmu_sc0000032.1_g000028
rosa_roxburghii	Rroxscaffold_160G00433800 Rroxscaffold_4G00327990 Rroxscaffold_5G00361320 Rroxscaffold_5G00361330 Rroxscaffold_5G00361340 Rroxscaffold_5G00361370 Rroxscaffold_5G00361380
rosa_rugosa	Rorug04G0150200 Rorug04G0150300 Rorug04G0150900 Rorug04G0151100 Rorug06G0218600
rosa_samantha	Rh4AG212500 Rh4AG212600 Rh4BG218100 Rh4BG218200 Rh4BG218300 Rh4BG218400 Rh4BG218500 Rh4CG223500 Rh4CG224100 Rh4CG224200 Rh4CG224500 Rh4DG210500 Rh4DG210800 Rh4DG211000 Rh4DG211100 Rh6AG330600 Rh6BG337500 Rh6BG337600 Rh6CG343900 Rh6DG330900
rosa_wichuraiana	Rw4G018040 Rw4G018050 Rw4G018060 Rw4G018070 Rw6G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	43, 134
AcsI	RAATTY	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	399
AfaI	GTAC	1 cut(s)	127
AfiI	CCNNNNNNNGG	1 cut(s)	282
AgsI	TTSAA	4 cut(s)	19, 61, 210, 406
AluBI	AGCT	2 cut(s)	23, 366
AluI	AGCT	2 cut(s)	23, 366
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	2 cut(s)	137, 273
ApoI	RAATTY	1 cut(s)	205
ArsI	GACNNNNNNTTYG	2 cut(s)	392, 424
Asp700I	GAANNNNTTC	2 cut(s)	89, 205
AspS9I	GGNCC	1 cut(s)	137
AsuHPI	GGTGA	2 cut(s)	94, 281
AsuII	TTCGAA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	341
BauI	CACGAG	2 cut(s)	67, 129
BbsI	GAAGAC	1 cut(s)	279
BccI	CCATC	1 cut(s)	160
BmcAI	AGTACT	1 cut(s)	127
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	137
BmiI	GGNNCC	1 cut(s)	138
BmsI	GCATC	1 cut(s)	316
BpiI	GAAGAC	1 cut(s)	279
Bpu14I	TTCGAA	1 cut(s)	224
BsaBI	GATNNNNATC	1 cut(s)	296
BsaJI	CCNNGG	2 cut(s)	281, 382
BsaXI	ACNNNNNCTCC	2 cut(s)	233, 263
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse8I	GATNNNNATC	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	281, 382
BseGI	GGATG	1 cut(s)	184
BseJI	GATNNNNATC	1 cut(s)	296
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseRI	GAGGAG	1 cut(s)	249
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	2 cut(s)	139, 275
BsiEI	CGRYCG	1 cut(s)	153
BsiHKCI	CYCGRG	1 cut(s)	341
BslI	CCNNNNNNNGG	1 cut(s)	282
BsnI	GGCC	2 cut(s)	139, 275
BsoBI	CYCGRG	1 cut(s)	341
Bsp119I	TTCGAA	1 cut(s)	224
Bsp143I	GATC	4 cut(s)	157, 291, 297, 337
BspACI	CCGC	2 cut(s)	43, 134
BspANI	GGCC	2 cut(s)	139, 275
BspHI	TCATGA	1 cut(s)	294
BspLI	GGNNCC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	224
BssECI	CCNNGG	2 cut(s)	281, 382
BssMI	GATC	4 cut(s)	157, 291, 297, 337
BssSI	CACGAG	2 cut(s)	67, 129
BssT1I	CCWWGG	1 cut(s)	382
Bst2BI	CACGAG	2 cut(s)	67, 129
Bst4CI	ACNGT	2 cut(s)	154, 269
BstBI	TTCGAA	1 cut(s)	224
BstC8I	GCNNGC	1 cut(s)	141
BstF5I	GGATG	1 cut(s)	184
BstKTI	GATC	4 cut(s)	160, 294, 300, 340
BstMBI	GATC	4 cut(s)	157, 291, 297, 337
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	1 cut(s)	140
BstV2I	GAAGAC	1 cut(s)	279
BsuRI	GGCC	2 cut(s)	139, 275
BtsCI	GGATG	1 cut(s)	184
Cac8I	GCNNGC	1 cut(s)	141
CciI	TCATGA	1 cut(s)	294
Cfr13I	GGNCC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	126
CviAII	CATG	1 cut(s)	295
CviJI	RGCY	5 cut(s)	23, 88, 139, 275, 366
CviKI_1	RGCY	5 cut(s)	23, 88, 139, 275, 366
CviQI	GTAC	1 cut(s)	126
DpnI	GATC	4 cut(s)	159, 293, 299, 339
DpnII	GATC	4 cut(s)	157, 291, 297, 337
Eco130I	CCWWGG	1 cut(s)	382
Eco32I	GATATC	1 cut(s)	118
Eco57I	CTGAAG	1 cut(s)	399
Eco88I	CYCGRG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	137
EcoRI	GAATTC	1 cut(s)	205
EcoRV	GATATC	1 cut(s)	118
EcoT14I	CCWWGG	1 cut(s)	382
ErhI	CCWWGG	1 cut(s)	382
FaeI	CATG	1 cut(s)	298
FaiI	YATR	2 cut(s)	296, 396
FatI	CATG	1 cut(s)	294
FauI	CCCGC	2 cut(s)	36, 127
FokI	GGATG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	139, 275
Hin1II	CATG	1 cut(s)	298
HindIII	AAGCTT	1 cut(s)	21
HinfI	GANTC	3 cut(s)	47, 193, 344
HphI	GGTGA	2 cut(s)	94, 281
Hpy166II	GTNNAC	1 cut(s)	265
Hpy188I	TCNGA	2 cut(s)	150, 302
Hpy188III	TCNNGA	6 cut(s)	67, 121, 163, 217, 295, 341
Hpy8I	GTNNAC	1 cut(s)	265
HpyCH4III	ACNGT	2 cut(s)	154, 269
HpyCH4V	TGCA	1 cut(s)	331
HpyF10VI	GCNNNNNNNGC	1 cut(s)	140
Hsp92II	CATG	1 cut(s)	298
Kzo9I	GATC	4 cut(s)	157, 291, 297, 337
LmnI	GCTCC	1 cut(s)	384
LpnPI	CCDG	2 cut(s)	153, 341
LweI	GCATC	1 cut(s)	316
MalI	GATC	4 cut(s)	159, 293, 299, 339
MboI	GATC	4 cut(s)	157, 291, 297, 337
MboII	GAAGA	3 cut(s)	7, 238, 279
MluCI	AATT	4 cut(s)	205, 332, 406, 427
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	1 cut(s)	173
MroXI	GAANNNNTTC	2 cut(s)	89, 205
MseI	TTAA	1 cut(s)	426
MwoI	GCNNNNNNNGC	1 cut(s)	140
NdeII	GATC	4 cut(s)	157, 291, 297, 337
NlaIII	CATG	1 cut(s)	298
NlaIV	GGNNCC	1 cut(s)	138
NspV	TTCGAA	1 cut(s)	224
PaeR7I	CTCGAG	1 cut(s)	341
PagI	TCATGA	1 cut(s)	294
PdmI	GAANNNNTTC	2 cut(s)	89, 205
PfeI	GAWTC	2 cut(s)	47, 193
PleI	GAGTC	1 cut(s)	352
PpsI	GAGTC	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	137
RsaI	GTAC	1 cut(s)	127
RsaNI	GTAC	1 cut(s)	126
SaqAI	TTAA	1 cut(s)	426
Sau3AI	GATC	4 cut(s)	157, 291, 297, 337
Sau96I	GGNCC	1 cut(s)	137
ScaI	AGTACT	1 cut(s)	127
SchI	GAGTC	1 cut(s)	353
SetI	ASST	6 cut(s)	25, 66, 108, 287, 356, 368
SfaNI	GCATC	1 cut(s)	316
Sfr274I	CTCGAG	1 cut(s)	341
SfuI	TTCGAA	1 cut(s)	224
SlaI	CTCGAG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	4 cut(s)	205, 332, 406, 427
SsiI	CCGC	2 cut(s)	43, 134
StyI	CCWWGG	1 cut(s)	382
TaaI	ACNGT	2 cut(s)	154, 269
TaqI	TCGA	3 cut(s)	224, 290, 342
TasI	AATT	4 cut(s)	205, 332, 406, 427
TatI	WGTACW	1 cut(s)	125
TfiI	GAWTC	2 cut(s)	47, 193
Tru1I	TTAA	1 cut(s)	426
Tru9I	TTAA	1 cut(s)	426
XapI	RAATTY	1 cut(s)	205
XhoI	CTCGAG	1 cut(s)	341
XmnI	GAANNNNTTC	2 cut(s)	89, 205
ZrmI	AGTACT	1 cut(s)	127

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.