Rh4DG211000

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000716
Physical Location & Seq
Reverse (-)
40611150 .. 40612694
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG211000.1

Sequence Viewer

Length: 1320 bp
ATGGCTTCCTCTTCATTTCAGTGCCTTATTCTTCTTTGCTCACTAGCTTTCTTCTTCTTCGCCACTCCCTCACTAGCCAAAACATCTTTCAAACCCAAAGCCCTAGTTCTTCCAGTAACTAAAGACCCTTCTACCCTCCAATACCTCACCACCATCAACCAAAGAACCCCTCTAGTCCCTGTTAAACTGACCATTGACCTCGGCGGTCAATCACTTTGGGTAGATTGTGAGGGAGGCTATGTCTCCTCCACCTACAAGCCTGCCCATTGTGGATCCTCGCAGTGCAAACTCGCCGGGTCCAAGGCGTGTACCACAGAGTGCTACTCACCCCCAAAACCAGGTTGCTATAACAACACGTGTAACATCTCCCCAGACAACCCTCTCGCCACCACACTCACCGGGAACGGTCAACTAGGTCAAGACGTAGTTTCCGTTCAATCCACAGATGGGTCTAATCCAGGTCCGGTTGTTTCTACACCAAACATCCTCTTCAGTTGTGGTGACACTTCTCTCTTGGCAAACCTTTCCGCCGGTGTTAAGGGCATGGCTGGCCTTGGCAGGCCTAAAGTCGGACTTCCTTCCCAGTTTGCATACGCTTTTAGCTTCAACAGGAAATTCGCCATTTGCCTGACCTCTTCAACAAAATCACAAGGTGTCATATTTTTCGGTGACAGTCCTTATGTTTTCCTTCCCGGCGTTGATGTCTCGAAGTCGCTTATGTTCACCAAATTGATCCTCAACCCGGTAAGCACGGCTGGTGGTTATTTCGCAGGCGATGCTTCTTCAGAATACTTCATTGGAGTAAAGTCCATCAAGGTCAACGAAAAAGTTGTTCCATTTAATACTACATTGCTAGCCATTGACCAAGAAGGGTATGGTGGCACAAGAATTAGCACTCTGAAGCCTTACACGGTTTTGGAGACTTCGATCTATAAGGCTGTCGTGAATGCGTTTGTGAAATCTCTCGCTCACATACCAAGATTGAAATCCGTAGCGCCTTTCGGAGCGTGCTACAACTCAAAGAGGATTGGAAGCACACGTGTCGGCCCGAGTGTGCCTGCAATTGACCTTGTGTTGAGCAAGGGAGTGTACTGGAGGGTGTTCGGAGCAAACTCGATGGTGAAGGTGGGCAAGGACGTGTTGTGTTTGGCATTTGTGGATGGCGGTGTAAGGCCAAGGACTTCTATTGTGATTGGAGGGCATCAAATCGAGGACAATCTTCTTCAATTTGATTTGGCTAACAAGAGGCTCGGATTCAGCTCCTCCTTGTTGTTCCAACAAACAAACTGTGCCAACTTTAACTTCACTTCCACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

439

Amino Acids

46.68

Weight (kDa)

9.19

Isoelectric Point (pI)

38.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 48 - 224 1.3e-45 Xylanase inhibitor N-terminal
TAXi_C PF14541 263 - 420 2.3e-61 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 204, 528, 1164
AclWI GGATC 3 cut(s) 267, 280, 727
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 3 cut(s) 475, 768, 920
AcvI CACGTG 2 cut(s) 357, 1040
AdeI CACNNNGTG 2 cut(s) 318, 653
AfaI GTAC 2 cut(s) 310, 1091
AfiI CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
AflIII ACRYGT 5 cut(s) 354, 356, 1037, 1039, 1137
AgsI TTSAA 6 cut(s) 91, 437, 607, 639, 985, 1226
AjiI CACGTC 1 cut(s) 1138
AjnI CCWGG 2 cut(s) 337, 457
AjuI GAANNNNNNNTTGG 6 cut(s) 71, 103, 780, 812, 1286, 1318
AluBI AGCT 3 cut(s) 47, 603, 1260
AluI AGCT 3 cut(s) 47, 603, 1260
Alw26I GTCTC 3 cut(s) 247, 709, 914
AlwI GGATC 3 cut(s) 267, 280, 727
Ama87I CYCGRG 1 cut(s) 1048
AoxI GGCC 4 cut(s) 550, 560, 1045, 1172
ApoI RAATTY 1 cut(s) 614
AspLEI GCGC 1 cut(s) 997
AspS9I GGNCC 3 cut(s) 297, 461, 1046
AsuC2I CCSGG 4 cut(s) 295, 400, 693, 743
AsuHPI GGTGA 7 cut(s) 139, 318, 388, 512, 680, 715, 1132
AsuNHI GCTAGC 1 cut(s) 853
AvaI CYCGRG 1 cut(s) 1048
AvaII GGWCC 2 cut(s) 297, 461
BamHI GGATCC 1 cut(s) 272
BbrPI CACGTG 2 cut(s) 357, 1040
BccI CCATC 5 cut(s) 161, 440, 818, 1111, 1154
BceAI ACGGC 1 cut(s) 768
BcgI CGANNNNNNTGC 2 cut(s) 1024, 1058
BciT130I CCWGG 2 cut(s) 339, 459
BcnI CCSGG 4 cut(s) 295, 400, 693, 743
BcoDI GTCTC 3 cut(s) 247, 709, 914
BfaI CTAG 6 cut(s) 44, 74, 104, 173, 413, 854
BfoI RGCGCY 1 cut(s) 998
Bme1390I CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
Bme18I GGWCC 2 cut(s) 297, 461
BmeT110I CYCGRG 1 cut(s) 1048
BmgBI CACGTC 1 cut(s) 1138
BmgT120I GGNCC 3 cut(s) 297, 461, 1046
BmiI GGNNCC 2 cut(s) 274, 298
BmrFI CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 2 cut(s) 766, 1210
BmtI GCTAGC 1 cut(s) 857
BmuI ACTGGG 1 cut(s) 577
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpmI CTGGAG 1 cut(s) 1114
BpuMI CCSGG 4 cut(s) 295, 400, 693, 743
BsaAI YACGTR 2 cut(s) 357, 1040
BsaBI GATNNNNATC 1 cut(s) 985
BsaJI CCNNGG 4 cut(s) 199, 300, 553, 1175
BsaWI WCCGGW 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 3 cut(s) 113, 583, 1097
Bse3DI GCAATG 1 cut(s) 848
Bse8I GATNNNNATC 1 cut(s) 985
BseBI CCWGG 2 cut(s) 339, 459
BseDI CCNNGG 4 cut(s) 199, 300, 553, 1175
BseGI GGATG 2 cut(s) 483, 1165
BseJI GATNNNNATC 1 cut(s) 985
BseLI CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
BseMI GCAATG 1 cut(s) 848
BseNI ACTGG 3 cut(s) 113, 583, 1097
BseRI GAGGAG 2 cut(s) 235, 1252
BshFI GGCC 4 cut(s) 552, 562, 1047, 1174
BsiHKCI CYCGRG 1 cut(s) 1048
BsiSI CCGG 6 cut(s) 294, 399, 464, 531, 693, 743
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
BsmAI GTCTC 3 cut(s) 247, 709, 914
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 4 cut(s) 552, 562, 1047, 1174
BsoBI CYCGRG 1 cut(s) 1048
Bsp143I GATC 3 cut(s) 272, 732, 927
BspACI CCGC 3 cut(s) 204, 528, 1164
BspANI GGCC 4 cut(s) 552, 562, 1047, 1174
BspLI GGNNCC 2 cut(s) 274, 298
BspOI GCTAGC 1 cut(s) 857
BspPI GGATC 3 cut(s) 267, 280, 727
BsrDI GCAATG 1 cut(s) 848
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 3 cut(s) 113, 583, 1097
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 4 cut(s) 199, 300, 553, 1175
BssMI GATC 3 cut(s) 272, 732, 927
BssT1I CCWWGG 3 cut(s) 300, 553, 1175
Bst2UI CCWGG 2 cut(s) 339, 459
Bst4CI ACNGT 4 cut(s) 407, 674, 913, 1289
Bst6I CTCTTC 3 cut(s) 16, 494, 640
BstAPI GCANNNNNTGC 1 cut(s) 776
BstBAI YACGTR 2 cut(s) 357, 1040
BstC8I GCNNGC 7 cut(s) 261, 550, 560, 772, 855, 1009, 1059
BstDEI CTNAG 1 cut(s) 1317
BstF5I GGATG 2 cut(s) 483, 1165
BstH2I RGCGCY 1 cut(s) 998
BstHHI GCGC 1 cut(s) 997
BstKTI GATC 3 cut(s) 275, 735, 930
BstMAI GTCTC 3 cut(s) 247, 709, 914
BstMBI GATC 3 cut(s) 272, 732, 927
BstMWI GCNNNNNNNGC 2 cut(s) 549, 776
BstNI CCWGG 2 cut(s) 339, 459
BstSCI CCNGG 6 cut(s) 293, 337, 398, 457, 691, 741
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 4 cut(s) 552, 562, 1047, 1174
BtgZI GCGATG 1 cut(s) 789
BtrI CACGTC 1 cut(s) 1138
BtsCI GGATG 2 cut(s) 483, 1165
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 2 cut(s) 26, 287
Cac8I GCNNGC 7 cut(s) 261, 550, 560, 772, 855, 1009, 1059
CfoI GCGC 1 cut(s) 997
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 3 cut(s) 297, 461, 1046
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 2 cut(s) 309, 1090
CviAII CATG 1 cut(s) 544
CviQI GTAC 2 cut(s) 309, 1090
DdeI CTNAG 1 cut(s) 1317
DpnI GATC 3 cut(s) 274, 734, 929
DpnII GATC 3 cut(s) 272, 732, 927
DraIII CACNNNGTG 2 cut(s) 318, 653
Eam1104I CTCTTC 3 cut(s) 16, 494, 640
EarI CTCTTC 3 cut(s) 16, 494, 640
EciI GGCGGA 1 cut(s) 517
Eco130I CCWWGG 3 cut(s) 300, 553, 1175
Eco147I AGGCCT 1 cut(s) 562
Eco47I GGWCC 2 cut(s) 297, 461
Eco57I CTGAAG 3 cut(s) 475, 768, 920
Eco72I CACGTG 2 cut(s) 357, 1040
Eco88I CYCGRG 1 cut(s) 1048
EcoRII CCWGG 2 cut(s) 337, 457
EcoT14I CCWWGG 3 cut(s) 300, 553, 1175
ErhI CCWWGG 3 cut(s) 300, 553, 1175
FaeI CATG 1 cut(s) 547
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 543
FokI GGATG 2 cut(s) 470, 1172
FspBI CTAG 6 cut(s) 44, 74, 104, 173, 413, 854
GlaI GCGC 1 cut(s) 996
GsuI CTGGAG 1 cut(s) 1114
HaeII RGCGCY 1 cut(s) 998
HaeIII GGCC 4 cut(s) 552, 562, 1047, 1174
HapII CCGG 6 cut(s) 294, 399, 464, 531, 693, 743
HhaI GCGC 1 cut(s) 997
Hin1II CATG 1 cut(s) 547
Hin6I GCGC 1 cut(s) 995
HinP1I GCGC 1 cut(s) 995
HincII GTYRAC 2 cut(s) 410, 820
HindII GTYRAC 2 cut(s) 410, 820
HinfI GANTC 1 cut(s) 1254
HpaII CCGG 6 cut(s) 294, 399, 464, 531, 693, 743
HphI GGTGA 7 cut(s) 139, 318, 388, 512, 680, 715, 1132
Hpy166II GTNNAC 5 cut(s) 309, 410, 723, 820, 1090
Hpy188I TCNGA 6 cut(s) 572, 787, 900, 1004, 1106, 1253
Hpy188III TCNNGA 3 cut(s) 419, 706, 943
Hpy8I GTNNAC 5 cut(s) 309, 410, 723, 820, 1090
HpyAV CCTTC 5 cut(s) 138, 588, 698, 863, 1117
HpyCH4III ACNGT 4 cut(s) 407, 674, 913, 1289
HpyCH4IV ACGT 4 cut(s) 356, 423, 1039, 1137
HpyCH4V TGCA 3 cut(s) 285, 590, 1061
HpyF10VI GCNNNNNNNGC 2 cut(s) 549, 776
HpyF3I CTNAG 1 cut(s) 1317
HpySE526I ACGT 4 cut(s) 356, 423, 1039, 1137
Hsp92II CATG 1 cut(s) 547
HspAI GCGC 1 cut(s) 995
Kzo9I GATC 3 cut(s) 272, 732, 927
LmnI GCTCC 3 cut(s) 1004, 1106, 1265
LweI GCATC 2 cut(s) 766, 1210
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 6 cut(s) 44, 74, 104, 173, 413, 854
MaeII ACGT 4 cut(s) 356, 423, 1039, 1137
MaeIII GTNAC 4 cut(s) 115, 359, 500, 668
MalI GATC 3 cut(s) 274, 734, 929
MboI GATC 3 cut(s) 272, 732, 927
MfeI CAATTG 1 cut(s) 1062
MflI RGATCY 1 cut(s) 272
MluCI AATT 5 cut(s) 614, 728, 888, 1062, 1226
MmeI TCCRAC 2 cut(s) 550, 1300
MseI TTAA 4 cut(s) 183, 537, 840, 1299
MslI CAYNNNNRTG 1 cut(s) 19
MspI CCGG 6 cut(s) 294, 399, 464, 531, 693, 743
MspR9I CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
MunI CAATTG 1 cut(s) 1062
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 2 cut(s) 339, 459
MwoI GCNNNNNNNGC 2 cut(s) 549, 776
NciI CCSGG 4 cut(s) 295, 400, 693, 743
NdeII GATC 3 cut(s) 272, 732, 927
NheI GCTAGC 1 cut(s) 853
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 2 cut(s) 274, 298
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 500, 668
PceI AGGCCT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 429
PctI GAATGC 1 cut(s) 952
PfeI GAWTC 1 cut(s) 1254
PmaCI CACGTG 2 cut(s) 357, 1040
PmlI CACGTG 2 cut(s) 357, 1040
Ppu21I YACGTR 2 cut(s) 357, 1040
Psp6I CCWGG 2 cut(s) 337, 457
PspCI CACGTG 2 cut(s) 357, 1040
PspGI CCWGG 2 cut(s) 337, 457
PspN4I GGNNCC 2 cut(s) 274, 298
PspPI GGNCC 3 cut(s) 297, 461, 1046
PsrI GAACNNNNNNTAC 2 cut(s) 417, 449
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 2 cut(s) 310, 1091
RsaNI GTAC 2 cut(s) 309, 1090
RseI CAYNNNNRTG 1 cut(s) 19
SaqAI TTAA 4 cut(s) 183, 537, 840, 1299
Sau3AI GATC 3 cut(s) 272, 732, 927
Sau96I GGNCC 3 cut(s) 297, 461, 1046
ScrFI CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 2 cut(s) 766, 1210
SgrAI CRCCGGYG 1 cut(s) 530
SinI GGWCC 2 cut(s) 297, 461
SmiMI CAYNNNNRTG 1 cut(s) 19
Sse9I AATT 5 cut(s) 614, 728, 888, 1062, 1226
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 3 cut(s) 204, 528, 1164
SspMI CTAG 6 cut(s) 44, 74, 104, 173, 413, 854
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 6 cut(s) 293, 337, 398, 457, 691, 741
StyI CCWWGG 3 cut(s) 300, 553, 1175
TaaI ACNGT 4 cut(s) 407, 674, 913, 1289
TaiI ACGT 4 cut(s) 359, 426, 1042, 1140
TaqI TCGA 4 cut(s) 707, 926, 1115, 1209
TasI AATT 5 cut(s) 614, 728, 888, 1062, 1226
TatI WGTACW 1 cut(s) 1089
TfiI GAWTC 1 cut(s) 1254
Tru1I TTAA 4 cut(s) 183, 537, 840, 1299
Tru9I TTAA 4 cut(s) 183, 537, 840, 1299
TscAI CASTG 2 cut(s) 26, 287
TseFI GTSAC 2 cut(s) 500, 668
Tsp45I GTSAC 2 cut(s) 500, 668
TspDTI ATGAA 1 cut(s) 784
TspGWI ACGGA 2 cut(s) 421, 979
TspRI CASTG 2 cut(s) 26, 287
VpaK11BI GGWCC 2 cut(s) 297, 461
XapI RAATTY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 872
XspI CTAG 6 cut(s) 44, 74, 104, 173, 413, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.