Rw4G018040

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000716
Physical Location & Seq
Reverse (-)
40233480 .. 40234577
1098 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018040.1

Sequence Viewer

Length: 987 bp
ATGGCTTCCTCATCATTTCTTTGCCTTACTCTCCTTTCCTCACTCGTCTTCTTCATCGCCACTCCATCACTAGCCGAAACATCTTTCCGGCCCAAAGCCCTCGTTCTTCCGGTAGCTAAACACTCTCCCACTCACCAATACCTCACCAGCATCAAGCAAAGAACCCCTCTTGTTCCTGTTAGACTAACCCTAGACCTCGGCGAGTGCGATTCTTCCCCCAAGCCAGGCTGCAACAACAACACATGTAGTGTCCTCCCAGACAACTCCGTGATCCCTACGTCCGGCAATGGCGGGGAGGTAGGTCAAGACGTCGTCTCCCTCCATTCCACAAATGGGTCTAACCCTACCACACTAGTTTATGTTCCTAACCTCCTCTTCGCTTGTGCTGAAATTTTTCTATTGGATCGCCTTGCAAGTGGTGTCAAAGGTATGGCTGGTCTTGGTAGAGCTAAAATTGGACTTCCTTCTCTATTTGCTTCCTCTTTTAGCTTCAAAAGAAAATTCACCATTTTCTTGCCCTCCTCAACAAAATCATACGGTGCCGTTTTCTTTGGAGATGGACCTTACAACCTTTTTCTTGGGATTGACATCTCTCAATCTCTTATTTACACCTCATTGCTCCTCAACCCTGTAAGCACTGCCAGTGCCTATTTTCAAGGCGATGCTTCTACGGAATACTTCATCAATGTAACGTCAATCAAGATCAACGACAAGGTCGTTTCGTCATTTAATAGTTCCTTGCTAACCATTGACGGAAATGGTTATGGCGGCACGAAGATCAACACGATGCATCCCTACACGGTCTTGGAGATGTCAATCTACAACTCTTTGGTCAATGCATTTGTCAGTGAACTCTCTCATGTACCCAGAGTGACACTGGTAGCACCATTCGGAGCTTGCTTCAACTCAACCAACATTGTCAGCACGAGTGTTGGCCTGGCTATGCCAACCATCGACCTTGTGTTGCAGAGTGAGAGCATGTACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

328

Amino Acids

34.99

Weight (kDa)

6.94

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 69 - 186 4.9e-24 Xylanase inhibitor N-terminal
TAXi_C PF14541 225 - 325 2.3e-27 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 312
AccB1I GGYRCC 1 cut(s) 539
AciI CCGC 2 cut(s) 291, 768
AclWI GGATC 2 cut(s) 265, 411
AcsI RAATTY 2 cut(s) 390, 500
AcyI GRCGYC 1 cut(s) 309
AfaI GTAC 2 cut(s) 864, 983
AfiI CCNNNNNNNGG 3 cut(s) 224, 281, 333
AflIII ACRYGT 1 cut(s) 242
AgsI TTSAA 3 cut(s) 493, 656, 904
AhlI ACTAGT 1 cut(s) 352
AjnI CCWGG 2 cut(s) 223, 936
AluBI AGCT 4 cut(s) 116, 449, 489, 896
AluI AGCT 4 cut(s) 116, 449, 489, 896
Alw26I GTCTC 1 cut(s) 319
AlwI GGATC 2 cut(s) 265, 411
AoxI GGCC 2 cut(s) 89, 934
ApeKI GCWGC 1 cut(s) 228
ApoI RAATTY 2 cut(s) 390, 500
Asp700I GAANNNNTTC 1 cut(s) 393
AspS9I GGNCC 2 cut(s) 90, 560
AsuHPI GGTGA 3 cut(s) 125, 136, 496
AvaII GGWCC 1 cut(s) 560
BanI GGYRCC 1 cut(s) 539
BauI CACGAG 1 cut(s) 925
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 215
BccI CCATC 3 cut(s) 73, 551, 959
BceAI ACGGC 1 cut(s) 527
BciT130I CCWGG 2 cut(s) 225, 938
BcoDI GTCTC 1 cut(s) 319
BcuI ACTAGT 1 cut(s) 352
BfaI CTAG 4 cut(s) 71, 191, 353, 985
BisI GCNGC 2 cut(s) 229, 769
BlsI GCNGC 2 cut(s) 230, 770
Bme1390I CCNGG 2 cut(s) 225, 938
Bme18I GGWCC 1 cut(s) 560
BmgT120I GGNCC 2 cut(s) 90, 560
BmiI GGNNCC 1 cut(s) 541
BmrFI CCNGG 2 cut(s) 225, 938
BmsI GCATC 4 cut(s) 159, 652, 777, 799
BpiI GAAGAC 1 cut(s) 40
BsaBI GATNNNNATC 2 cut(s) 587, 815
BsaHI GRCGYC 1 cut(s) 309
BsaJI CCNNGG 1 cut(s) 196
BsaWI WCCGGW 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 299, 329
Bsc4I CCNNNNNNNGG 3 cut(s) 224, 281, 333
Bse1I ACTGG 2 cut(s) 642, 882
Bse3DI GCAATG 2 cut(s) 292, 614
Bse8I GATNNNNATC 2 cut(s) 587, 815
BseBI CCWGG 2 cut(s) 225, 938
BseDI CCNNGG 1 cut(s) 196
BseGI GGATG 1 cut(s) 790
BseJI GATNNNNATC 2 cut(s) 587, 815
BseLI CCNNNNNNNGG 3 cut(s) 224, 281, 333
BseMI GCAATG 2 cut(s) 292, 614
BseNI ACTGG 2 cut(s) 642, 882
BseRI GAGGAG 3 cut(s) 362, 511, 611
BseXI GCAGC 1 cut(s) 215
BshFI GGCC 2 cut(s) 91, 936
BshNI GGYRCC 1 cut(s) 539
BsiSI CCGG 3 cut(s) 88, 110, 282
BslI CCNNNNNNNGG 3 cut(s) 224, 281, 333
BsmAI GTCTC 1 cut(s) 319
BsmBI CGTCTC 1 cut(s) 319
BsnI GGCC 2 cut(s) 91, 936
Bsp143I GATC 4 cut(s) 270, 403, 702, 777
BspACI CCGC 2 cut(s) 291, 768
BspANI GGCC 2 cut(s) 91, 936
BspLI GGNNCC 1 cut(s) 541
BspPI GGATC 2 cut(s) 265, 411
BspT107I GGYRCC 1 cut(s) 539
BsrDI GCAATG 2 cut(s) 292, 614
BsrI ACTGG 2 cut(s) 642, 882
BssECI CCNNGG 1 cut(s) 196
BssMI GATC 4 cut(s) 270, 403, 702, 777
BssNI GRCGYC 1 cut(s) 309
BssSI CACGAG 1 cut(s) 925
Bst2BI CACGAG 1 cut(s) 925
Bst2UI CCWGG 2 cut(s) 225, 938
Bst4CI ACNGT 2 cut(s) 539, 802
Bst6I CTCTTC 1 cut(s) 380
BstACI GRCGYC 1 cut(s) 309
BstC8I GCNNGC 1 cut(s) 898
BstF5I GGATG 1 cut(s) 790
BstKTI GATC 4 cut(s) 273, 406, 705, 780
BstMAI GTCTC 1 cut(s) 319
BstMBI GATC 4 cut(s) 270, 403, 702, 777
BstNI CCWGG 2 cut(s) 225, 938
BstNSI RCATGY 2 cut(s) 246, 982
BstSCI CCNGG 2 cut(s) 223, 936
BstV1I GCAGC 1 cut(s) 215
BstV2I GAAGAC 1 cut(s) 40
BsuRI GGCC 2 cut(s) 91, 936
BtgZI GCGATG 2 cut(s) 40, 675
BtsCI GGATG 1 cut(s) 790
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 4 cut(s) 636, 649, 853, 875
Cac8I GCNNGC 1 cut(s) 898
Cfr13I GGNCC 2 cut(s) 90, 560
Csp6I GTAC 2 cut(s) 863, 982
CviAII CATG 3 cut(s) 243, 860, 979
CviQI GTAC 2 cut(s) 863, 982
DpnI GATC 4 cut(s) 272, 405, 704, 779
DpnII GATC 4 cut(s) 270, 403, 702, 777
Eam1104I CTCTTC 1 cut(s) 380
EarI CTCTTC 1 cut(s) 380
Eco47I GGWCC 1 cut(s) 560
EcoRII CCWGG 2 cut(s) 223, 936
EcoT22I ATGCAT 2 cut(s) 792, 841
Esp3I CGTCTC 1 cut(s) 319
FaeI CATG 3 cut(s) 246, 863, 982
FaiI YATR 8 cut(s) 244, 360, 431, 535, 765, 861, 944, 980
FatI CATG 3 cut(s) 242, 859, 978
FauI CCCGC 1 cut(s) 284
Fnu4HI GCNGC 2 cut(s) 229, 769
FokI GGATG 1 cut(s) 777
Fsp4HI GCNGC 2 cut(s) 229, 769
FspBI CTAG 4 cut(s) 71, 191, 353, 985
GluI GCNGC 2 cut(s) 229, 769
HaeIII GGCC 2 cut(s) 91, 936
HapII CCGG 3 cut(s) 88, 110, 282
Hin1I GRCGYC 1 cut(s) 309
Hin1II CATG 3 cut(s) 246, 863, 982
HinfI GANTC 1 cut(s) 209
HpaII CCGG 3 cut(s) 88, 110, 282
HphI GGTGA 3 cut(s) 125, 136, 496
Hpy166II GTNNAC 1 cut(s) 851
Hpy188I TCNGA 1 cut(s) 893
Hpy188III TCNNGA 2 cut(s) 305, 700
Hpy8I GTNNAC 1 cut(s) 851
Hpy99I CGWCG 1 cut(s) 314
HpyAV CCTTC 1 cut(s) 474
HpyCH4III ACNGT 2 cut(s) 539, 802
HpyCH4IV ACGT 3 cut(s) 278, 309, 692
HpyCH4V TGCA 5 cut(s) 231, 413, 790, 839, 967
HpySE526I ACGT 3 cut(s) 278, 309, 692
Hsp92I GRCGYC 1 cut(s) 309
Hsp92II CATG 3 cut(s) 246, 863, 982
Kzo9I GATC 4 cut(s) 270, 403, 702, 777
LmnI GCTCC 2 cut(s) 624, 893
Lsp1109I GCAGC 1 cut(s) 215
LweI GCATC 4 cut(s) 159, 652, 777, 799
MaeI CTAG 4 cut(s) 71, 191, 353, 985
MaeII ACGT 3 cut(s) 278, 309, 692
MaeIII GTNAC 2 cut(s) 688, 871
MalI GATC 4 cut(s) 272, 405, 704, 779
MboI GATC 4 cut(s) 270, 403, 702, 777
MboII GAAGA 6 cut(s) 40, 43, 98, 204, 367, 787
MluCI AATT 3 cut(s) 390, 453, 500
Mph1103I ATGCAT 2 cut(s) 792, 841
MroXI GAANNNNTTC 1 cut(s) 393
MseI TTAA 1 cut(s) 729
MspI CCGG 3 cut(s) 88, 110, 282
MspR9I CCNGG 2 cut(s) 225, 938
MvaI CCWGG 2 cut(s) 225, 938
NdeII GATC 4 cut(s) 270, 403, 702, 777
NlaIII CATG 3 cut(s) 246, 863, 982
NlaIV GGNNCC 1 cut(s) 541
NmeAIII GCCGAG 1 cut(s) 177
NmuCI GTSAC 1 cut(s) 871
NsiI ATGCAT 2 cut(s) 792, 841
NspI RCATGY 2 cut(s) 246, 982
PciI ACATGT 1 cut(s) 242
PcsI WCGNNNNNNNCGW 2 cut(s) 204, 714
PdmI GAANNNNTTC 1 cut(s) 393
PfeI GAWTC 1 cut(s) 209
PflFI GACNNNGTC 2 cut(s) 311, 713
PkrI GCNGC 2 cut(s) 230, 770
PscI ACATGT 1 cut(s) 242
Psp6I CCWGG 2 cut(s) 223, 936
PspGI CCWGG 2 cut(s) 223, 936
PspN4I GGNNCC 1 cut(s) 541
PspPI GGNCC 2 cut(s) 90, 560
PsyI GACNNNGTC 2 cut(s) 311, 713
RsaI GTAC 2 cut(s) 864, 983
RsaNI GTAC 2 cut(s) 863, 982
SaqAI TTAA 1 cut(s) 729
SatI GCNGC 2 cut(s) 229, 769
Sau3AI GATC 4 cut(s) 270, 403, 702, 777
Sau96I GGNCC 2 cut(s) 90, 560
ScrFI CCNGG 2 cut(s) 225, 938
SfaNI GCATC 4 cut(s) 159, 652, 777, 799
SinI GGWCC 1 cut(s) 560
SpeI ACTAGT 1 cut(s) 352
Sse9I AATT 3 cut(s) 390, 453, 500
SsiI CCGC 2 cut(s) 291, 768
SspMI CTAG 4 cut(s) 71, 191, 353, 985
StyD4I CCNGG 2 cut(s) 223, 936
TaaI ACNGT 2 cut(s) 539, 802
TaiI ACGT 3 cut(s) 281, 312, 695
TaqI TCGA 1 cut(s) 954
TasI AATT 3 cut(s) 390, 453, 500
TatI WGTACW 1 cut(s) 981
TauI GCSGC 1 cut(s) 771
TfiI GAWTC 1 cut(s) 209
Tru1I TTAA 1 cut(s) 729
Tru9I TTAA 1 cut(s) 729
TscAI CASTG 4 cut(s) 643, 649, 853, 882
TseFI GTSAC 1 cut(s) 871
TseI GCWGC 1 cut(s) 228
Tsp45I GTSAC 1 cut(s) 871
TspDTI ATGAA 2 cut(s) 43, 670
TspGWI ACGGA 3 cut(s) 256, 686, 768
TspRI CASTG 4 cut(s) 643, 649, 853, 882
Tth111I GACNNNGTC 2 cut(s) 311, 713
VpaK11BI GGWCC 1 cut(s) 560
XapI RAATTY 2 cut(s) 390, 500
XceI RCATGY 2 cut(s) 246, 982
XcmI CCANNNNNNNNNTGG 2 cut(s) 329, 874
XmnI GAANNNNTTC 1 cut(s) 393
XspI CTAG 4 cut(s) 71, 191, 353, 985
ZraI GACGTC 1 cut(s) 310
Zsp2I ATGCAT 2 cut(s) 792, 841
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.