Rh4DG211100

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000716
Physical Location & Seq
Forward (+)
40613842 .. 40615359
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG211100.1

Sequence Viewer

Length: 1332 bp
ATGGCTTTCTCATCATTTCAACGCCTTGTTCTCTTTTGCTCACTAGCTTTCTTCTTCTTCGTCACTCCCTCACTAGCCAAAACATCTTTCAAACCCAAAGCCCTAGTTCTTCCGGTGACGAAAGATCCTTCTACCCTCCAATACCTCACCACCATCAACCAAAGAACCCCTCTAGTCCCCGTTAAACTGACTGTTGACCTCGGCGGTCAGTCCCTTTGGGTAGATTGTGAGCAAGGCTATGTCTCCTCCACCTACAAGCCTGCCCATTGTGGATCTCCCCAGTGCAAGATAGCTGGGTCCAGGGTTTGTACTAAAGAATGCTACTCATCCCCAAAACCGGGTTGTAACAACAACACATGCACCATCTTCCCTGACAACGATCTCGCCACCACATTCTATAGCAATAAAGCGGGTCTAGACATCGGTCAAGTGGGCCAAGACGTCATCTCAATCCGATCTACAGATGGGTCTAATATGGGTCCGGTCGTTTCTACTCCAAACATCCTCTTCAGCTGTGATGACACTTCTCTCTTGGCAAACCTTTCCGCTGGTGTTAAGGGCATGGCTGGCCTTGGCAGATTTAAAGTCGGACTTCCTACCCAGTTTGCTTACGCTTTTAGCTTCAATACGAAATTCGCCATTTGCTTGACCTCTGCAGCAAAATCGAAAGGTGTCATATTTTTTGGTGACAGTCCTTATGTTTTCCTTCCCGGCATTGATGTCTCCAAGTCGCTTAAGTATACCAAATTGATCCTCAACCCGGTTAGCACGGCTGCTATTTATTTCGAAGGCGATGCTTCATCAGACTACTTTATCGAAGTAAAGTCTATCAAGGTCAATGAAAAGGTCGTTCCGATAAATACTAATTTGCTAGCCATCGACCGTGACGGGAATGGCGGGACAAGTATTAGCACATTGAAGCCTTACACGGTTTTGGAGATTTCAATCTACAAGGCTGTCGTCAATGCGTTTGTGAAATCACTCGCTCACATACCAACAGTGAAACCCGTAGCGCCTTTTGGAGCTTGCTATGATTCAAAGAAGATCAGCAGCACACGTGTCGGCCCAGGTGTGCCTGCAATTGACCTTGTATTGAGCAAGGGAGTGTACTGGAGGGTGTTTGGTGCAAACTCCATGGTGCAGGTGAGCAAGGACGTGTTGTGTTTAGGGTTTGTGAATGGCGGTGTGAGGCCAAGGACTTCTATTGTGATTGGAGGGCATCAAATCGAGGACAATCTTCTTCAGTTTGATTTGGCTAACAAGAGGCTCGGGTTCAGCTCCTCCTTGTTGTTCCAACAGACAACCTGTGCCAACTTCAACTTCACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

443

Amino Acids

47.64

Weight (kDa)

9.09

Isoelectric Point (pI)

35.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 48 - 230 1.5e-41 Xylanase inhibitor N-terminal
TAXi_C PF14541 269 - 426 2.1e-60 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1132
AatII GACGTC 1 cut(s) 444
Acc36I ACCTGC 1 cut(s) 1132
AccI GTMKAC 1 cut(s) 740
AciI CCGC 5 cut(s) 204, 410, 546, 897, 1182
AclWI GGATC 3 cut(s) 119, 280, 745
AcsI RAATTY 1 cut(s) 632
AcuI CTGAAG 2 cut(s) 493, 1226
AcvI CACGTG 1 cut(s) 1058
AcyI GRCGYC 1 cut(s) 441
AfaI GTAC 2 cut(s) 310, 1109
AfiI CCNNNNNNNGG 3 cut(s) 337, 338, 760
AflII CTTAAG 1 cut(s) 734
AflIII ACRYGT 3 cut(s) 1055, 1057, 1155
AgsI TTSAA 7 cut(s) 20, 91, 625, 919, 945, 1038, 1318
AjiI CACGTC 1 cut(s) 1156
AjnI CCWGG 2 cut(s) 299, 1066
AjuI GAANNNNNNNTTGG 3 cut(s) 71, 103, 1304
AluBI AGCT 6 cut(s) 47, 293, 513, 621, 1025, 1278
AluI AGCT 6 cut(s) 47, 293, 513, 621, 1025, 1278
Alw26I GTCTC 2 cut(s) 247, 727
AlwI GGATC 3 cut(s) 119, 280, 745
Ama87I CYCGRG 1 cut(s) 1268
AoxI GGCC 4 cut(s) 433, 568, 1063, 1190
ApeKI GCWGC 3 cut(s) 656, 773, 1050
ApoI RAATTY 1 cut(s) 632
AspLEI GCGC 1 cut(s) 1015
AspS9I GGNCC 4 cut(s) 297, 433, 479, 1064
AsuC2I CCSGG 3 cut(s) 339, 711, 761
AsuHPI GGTGA 4 cut(s) 127, 139, 698, 1156
AsuII TTCGAA 1 cut(s) 786
AsuNHI GCTAGC 1 cut(s) 871
AvaI CYCGRG 1 cut(s) 1268
AvaII GGWCC 2 cut(s) 297, 479
BbrPI CACGTG 1 cut(s) 1058
BbvI GCAGC 3 cut(s) 668, 760, 1062
BccI CCATC 4 cut(s) 161, 371, 458, 884
BceAI ACGGC 1 cut(s) 786
BcgI CGANNNNNNTGC 6 cut(s) 645, 679, 776, 810, 1042, 1076
BciT130I CCWGG 2 cut(s) 301, 1068
BcnI CCSGG 3 cut(s) 339, 711, 761
BcoDI GTCTC 2 cut(s) 247, 727
BfaI CTAG 6 cut(s) 44, 74, 104, 173, 416, 872
BfmI CTRYAG 3 cut(s) 397, 459, 654
BfoI RGCGCY 1 cut(s) 1016
BfrI CTTAAG 1 cut(s) 734
BfuAI ACCTGC 1 cut(s) 1132
BisI GCNGC 3 cut(s) 657, 774, 1051
BlsI GCNGC 3 cut(s) 658, 775, 1052
Bme1390I CCNGG 5 cut(s) 301, 339, 711, 761, 1068
Bme18I GGWCC 2 cut(s) 297, 479
BmeT110I CYCGRG 1 cut(s) 1268
BmgBI CACGTC 1 cut(s) 1156
BmgT120I GGNCC 4 cut(s) 297, 433, 479, 1064
BmiI GGNNCC 2 cut(s) 298, 480
BmrFI CCNGG 5 cut(s) 301, 339, 711, 761, 1068
BmrI ACTGGG 2 cut(s) 274, 595
BmsI GCATC 2 cut(s) 784, 1228
BmtI GCTAGC 1 cut(s) 875
BmuI ACTGGG 2 cut(s) 274, 595
BoxI GACNNNNGTC 1 cut(s) 423
BpmI CTGGAG 1 cut(s) 1132
Bpu14I TTCGAA 1 cut(s) 786
BpuMI CCSGG 3 cut(s) 339, 711, 761
BsaAI YACGTR 1 cut(s) 1058
BsaBI GATNNNNATC 1 cut(s) 944
BsaHI GRCGYC 1 cut(s) 441
BsaJI CCNNGG 6 cut(s) 199, 300, 571, 1066, 1134, 1193
BsaWI WCCGGW 2 cut(s) 112, 481
Bsc4I CCNNNNNNNGG 3 cut(s) 337, 338, 760
Bse1I ACTGG 3 cut(s) 280, 601, 1115
Bse8I GATNNNNATC 1 cut(s) 944
BseBI CCWGG 2 cut(s) 301, 1068
BseDI CCNNGG 6 cut(s) 199, 300, 571, 1066, 1134, 1193
BseGI GGATG 2 cut(s) 326, 501
BseJI GATNNNNATC 1 cut(s) 944
BseLI CCNNNNNNNGG 3 cut(s) 337, 338, 760
BseNI ACTGG 3 cut(s) 280, 601, 1115
BseRI GAGGAG 2 cut(s) 235, 1270
BseXI GCAGC 3 cut(s) 668, 760, 1062
BseYI CCCAGC 1 cut(s) 293
BsgI GTGCAG 1 cut(s) 1160
Bsh1285I CGRYCG 2 cut(s) 486, 883
BshFI GGCC 4 cut(s) 435, 570, 1065, 1192
BsiEI CGRYCG 2 cut(s) 486, 883
BsiHKCI CYCGRG 1 cut(s) 1268
BsiSI CCGG 5 cut(s) 113, 338, 482, 711, 761
BslFI GGGAC 3 cut(s) 161, 196, 913
BslI CCNNNNNNNGG 3 cut(s) 337, 338, 760
BsmAI GTCTC 2 cut(s) 247, 727
BsmFI GGGAC 3 cut(s) 161, 196, 913
BsmI GAATGC 1 cut(s) 323
BsnI GGCC 4 cut(s) 435, 570, 1065, 1192
BsoBI CYCGRG 1 cut(s) 1268
Bsp119I TTCGAA 1 cut(s) 786
Bsp143I GATC 6 cut(s) 124, 272, 379, 455, 750, 1044
Bsp19I CCATGG 1 cut(s) 1134
BspACI CCGC 5 cut(s) 204, 410, 546, 897, 1182
BspANI GGCC 4 cut(s) 435, 570, 1065, 1192
BspLI GGNNCC 2 cut(s) 298, 480
BspMAI CTGCAG 1 cut(s) 658
BspMI ACCTGC 1 cut(s) 1132
BspOI GCTAGC 1 cut(s) 875
BspPI GGATC 3 cut(s) 119, 280, 745
BspT104I TTCGAA 1 cut(s) 786
BspTI CTTAAG 1 cut(s) 734
BsrI ACTGG 3 cut(s) 280, 601, 1115
BssECI CCNNGG 6 cut(s) 199, 300, 571, 1066, 1134, 1193
BssMI GATC 6 cut(s) 124, 272, 379, 455, 750, 1044
BssNAI GTATAC 1 cut(s) 741
BssNI GRCGYC 1 cut(s) 441
BssT1I CCWWGG 3 cut(s) 571, 1134, 1193
Bst1107I GTATAC 1 cut(s) 741
Bst2UI CCWGG 2 cut(s) 301, 1068
Bst4CI ACNGT 5 cut(s) 193, 692, 884, 931, 1000
Bst6I CTCTTC 1 cut(s) 512
BstACI GRCGYC 1 cut(s) 441
BstAFI CTTAAG 1 cut(s) 734
BstBAI YACGTR 1 cut(s) 1058
BstBI TTCGAA 1 cut(s) 786
BstC8I GCNNGC 5 cut(s) 261, 568, 873, 1027, 1077
BstDEI CTNAG 1 cut(s) 1329
BstDSI CCRYGG 1 cut(s) 1134
BstF5I GGATG 2 cut(s) 326, 501
BstH2I RGCGCY 1 cut(s) 1016
BstHHI GCGC 1 cut(s) 1015
BstKTI GATC 6 cut(s) 127, 275, 382, 458, 753, 1047
BstMAI GTCTC 2 cut(s) 247, 727
BstMBI GATC 6 cut(s) 124, 272, 379, 455, 750, 1044
BstMCI CGRYCG 2 cut(s) 486, 883
BstMWI GCNNNNNNNGC 1 cut(s) 567
BstNI CCWGG 2 cut(s) 301, 1068
BstNSI RCATGY 1 cut(s) 360
BstPAI GACNNNNGTC 1 cut(s) 423
BstSCI CCNGG 5 cut(s) 299, 337, 709, 759, 1066
BstSFI CTRYAG 3 cut(s) 397, 459, 654
BstV1I GCAGC 3 cut(s) 668, 760, 1062
BstX2I RGATCY 2 cut(s) 124, 272
BstYI RGATCY 2 cut(s) 124, 272
BstZ17I GTATAC 1 cut(s) 741
BsuRI GGCC 4 cut(s) 435, 570, 1065, 1192
BtgI CCRYGG 1 cut(s) 1134
BtgZI GCGATG 1 cut(s) 807
BtrI CACGTC 1 cut(s) 1156
BtsCI GGATG 2 cut(s) 326, 501
BtsIMutI CAGTG 2 cut(s) 287, 1005
BveI ACCTGC 1 cut(s) 1132
Cac8I GCNNGC 5 cut(s) 261, 568, 873, 1027, 1077
CfoI GCGC 1 cut(s) 1015
Cfr13I GGNCC 4 cut(s) 297, 433, 479, 1064
Csp6I GTAC 2 cut(s) 309, 1108
CviAII CATG 3 cut(s) 357, 562, 1135
CviQI GTAC 2 cut(s) 309, 1108
DdeI CTNAG 1 cut(s) 1329
DpnI GATC 6 cut(s) 126, 274, 381, 457, 752, 1046
DpnII GATC 6 cut(s) 124, 272, 379, 455, 750, 1044
DraI TTTAAA 1 cut(s) 583
Eam1104I CTCTTC 1 cut(s) 512
EarI CTCTTC 1 cut(s) 512
Eco130I CCWWGG 3 cut(s) 571, 1134, 1193
Eco47I GGWCC 2 cut(s) 297, 479
Eco57I CTGAAG 2 cut(s) 493, 1226
Eco72I CACGTG 1 cut(s) 1058
Eco88I CYCGRG 1 cut(s) 1268
EcoRII CCWGG 2 cut(s) 299, 1066
EcoT14I CCWWGG 3 cut(s) 571, 1134, 1193
ErhI CCWWGG 3 cut(s) 571, 1134, 1193
FaeI CATG 3 cut(s) 360, 565, 1138
FalI AAGNNNNNCTT 2 cut(s) 576, 608
FaqI GGGAC 3 cut(s) 161, 196, 913
FatI CATG 3 cut(s) 356, 561, 1134
FauI CCCGC 2 cut(s) 403, 890
FblI GTMKAC 1 cut(s) 740
Fnu4HI GCNGC 3 cut(s) 657, 774, 1051
FokI GGATG 2 cut(s) 313, 488
Fsp4HI GCNGC 3 cut(s) 657, 774, 1051
FspBI CTAG 6 cut(s) 44, 74, 104, 173, 416, 872
GlaI GCGC 1 cut(s) 1014
GluI GCNGC 3 cut(s) 657, 774, 1051
GsaI CCCAGC 1 cut(s) 297
GsuI CTGGAG 1 cut(s) 1132
HaeII RGCGCY 1 cut(s) 1016
HaeIII GGCC 4 cut(s) 435, 570, 1065, 1192
HapII CCGG 5 cut(s) 113, 338, 482, 711, 761
HhaI GCGC 1 cut(s) 1015
Hin1I GRCGYC 1 cut(s) 441
Hin1II CATG 3 cut(s) 360, 565, 1138
Hin6I GCGC 1 cut(s) 1013
HinP1I GCGC 1 cut(s) 1013
HincII GTYRAC 1 cut(s) 196
HindII GTYRAC 1 cut(s) 196
HinfI GANTC 1 cut(s) 1034
HpaII CCGG 5 cut(s) 113, 338, 482, 711, 761
HphI GGTGA 4 cut(s) 127, 139, 698, 1156
Hpy166II GTNNAC 3 cut(s) 196, 741, 1108
Hpy188I TCNGA 4 cut(s) 455, 590, 805, 855
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 3 cut(s) 196, 741, 1108
HpyAV CCTTC 3 cut(s) 138, 716, 782
HpyCH4III ACNGT 5 cut(s) 193, 692, 884, 931, 1000
HpyCH4IV ACGT 3 cut(s) 441, 1057, 1155
HpyCH4V TGCA 6 cut(s) 285, 360, 656, 1079, 1127, 1141
HpyF10VI GCNNNNNNNGC 1 cut(s) 567
HpyF3I CTNAG 1 cut(s) 1329
HpySE526I ACGT 3 cut(s) 441, 1057, 1155
Hsp92I GRCGYC 1 cut(s) 441
Hsp92II CATG 3 cut(s) 360, 565, 1138
HspAI GCGC 1 cut(s) 1013
Kzo9I GATC 6 cut(s) 124, 272, 379, 455, 750, 1044
LmnI GCTCC 2 cut(s) 1022, 1283
Lsp1109I GCAGC 3 cut(s) 668, 760, 1062
LweI GCATC 2 cut(s) 784, 1228
MaeI CTAG 6 cut(s) 44, 74, 104, 173, 416, 872
MaeII ACGT 3 cut(s) 441, 1057, 1155
MaeIII GTNAC 5 cut(s) 61, 115, 344, 686, 884
MalI GATC 6 cut(s) 126, 274, 381, 457, 752, 1046
MboI GATC 6 cut(s) 124, 272, 379, 455, 750, 1044
MboII GAAGA 9 cut(s) 43, 46, 49, 101, 358, 499, 1054, 1229, 1232
MfeI CAATTG 1 cut(s) 1080
MflI RGATCY 2 cut(s) 124, 272
MluCI AATT 4 cut(s) 632, 746, 865, 1080
MmeI TCCRAC 2 cut(s) 568, 1318
MseI TTAA 4 cut(s) 183, 555, 582, 735
MspA1I CMGCKG 2 cut(s) 513, 548
MspCI CTTAAG 1 cut(s) 734
MspI CCGG 5 cut(s) 113, 338, 482, 711, 761
MspR9I CCNGG 5 cut(s) 301, 339, 711, 761, 1068
MunI CAATTG 1 cut(s) 1080
Mva1269I GAATGC 1 cut(s) 323
MvaI CCWGG 2 cut(s) 301, 1068
MwoI GCNNNNNNNGC 1 cut(s) 567
NciI CCSGG 3 cut(s) 339, 711, 761
NcoI CCATGG 1 cut(s) 1134
NdeII GATC 6 cut(s) 124, 272, 379, 455, 750, 1044
NheI GCTAGC 1 cut(s) 871
NlaIII CATG 3 cut(s) 360, 565, 1138
NlaIV GGNNCC 2 cut(s) 298, 480
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 4 cut(s) 61, 115, 686, 884
NspI RCATGY 1 cut(s) 360
NspV TTCGAA 1 cut(s) 786
PaqCI CACCTGC 1 cut(s) 1132
PctI GAATGC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 1034
PkrI GCNGC 3 cut(s) 658, 775, 1052
PmaCI CACGTG 1 cut(s) 1058
PmlI CACGTG 1 cut(s) 1058
Ppu21I YACGTR 1 cut(s) 1058
PshAI GACNNNNGTC 1 cut(s) 423
Psp6I CCWGG 2 cut(s) 299, 1066
PspCI CACGTG 1 cut(s) 1058
PspFI CCCAGC 1 cut(s) 293
PspGI CCWGG 2 cut(s) 299, 1066
PspN4I GGNNCC 2 cut(s) 298, 480
PspPI GGNCC 4 cut(s) 297, 433, 479, 1064
PstI CTGCAG 1 cut(s) 658
PsuI RGATCY 2 cut(s) 124, 272
PvuII CAGCTG 1 cut(s) 513
RsaI GTAC 2 cut(s) 310, 1109
RsaNI GTAC 2 cut(s) 309, 1108
SaqAI TTAA 4 cut(s) 183, 555, 582, 735
SatI GCNGC 3 cut(s) 657, 774, 1051
Sau3AI GATC 6 cut(s) 124, 272, 379, 455, 750, 1044
Sau96I GGNCC 4 cut(s) 297, 433, 479, 1064
ScrFI CCNGG 5 cut(s) 301, 339, 711, 761, 1068
SfaNI GCATC 2 cut(s) 784, 1228
SfcI CTRYAG 3 cut(s) 397, 459, 654
SfuI TTCGAA 1 cut(s) 786
SinI GGWCC 2 cut(s) 297, 479
SmlI CTYRAG 1 cut(s) 734
SmoI CTYRAG 1 cut(s) 734
Sse9I AATT 4 cut(s) 632, 746, 865, 1080
SsiI CCGC 5 cut(s) 204, 410, 546, 897, 1182
SspMI CTAG 6 cut(s) 44, 74, 104, 173, 416, 872
StyD4I CCNGG 5 cut(s) 299, 337, 709, 759, 1066
StyI CCWWGG 3 cut(s) 571, 1134, 1193
TaaI ACNGT 5 cut(s) 193, 692, 884, 931, 1000
TaiI ACGT 3 cut(s) 444, 1060, 1158
TaqI TCGA 5 cut(s) 665, 786, 816, 879, 1227
TaqII GACCGA 1 cut(s) 413
TasI AATT 4 cut(s) 632, 746, 865, 1080
TatI WGTACW 2 cut(s) 308, 1107
TfiI GAWTC 1 cut(s) 1034
Tru1I TTAA 4 cut(s) 183, 555, 582, 735
Tru9I TTAA 4 cut(s) 183, 555, 582, 735
TscAI CASTG 2 cut(s) 287, 1005
TseFI GTSAC 4 cut(s) 61, 115, 686, 884
TseI GCWGC 3 cut(s) 656, 773, 1050
Tsp45I GTSAC 4 cut(s) 61, 115, 686, 884
TspDTI ATGAA 2 cut(s) 789, 855
TspRI CASTG 2 cut(s) 287, 1005
Vha464I CTTAAG 1 cut(s) 734
VpaK11BI GGWCC 2 cut(s) 297, 479
XapI RAATTY 1 cut(s) 632
XbaI TCTAGA 1 cut(s) 415
XceI RCATGY 1 cut(s) 360
XmiI GTMKAC 1 cut(s) 740
XspI CTAG 6 cut(s) 44, 74, 104, 173, 416, 872
ZraI GACGTC 1 cut(s) 442
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.