FvH4_4g14670

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000716
Physical Location & Seq
Forward (+)
18363879 .. 18365219
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14670.t1

Sequence Viewer

Length: 1269 bp
ATGGCTAATTCCTCATCATTTCTCTGCCTTGCTCTATTTTCCTCACTCGTCTTCTTCATCGCCACTCCATCTTTAGCCAAAACATCTTTCCGTCCCAAAGCCCTGGTTCTTCCGGTAGCCAAACACTCTCCCACTCACCAATACCTCACCAGCATCAAGCAAAGAACCCCTCTTGTCCCTGTAAGACTAACCCTAGACCTCGGCGGTCAGTTCCTTTGGGTAGACTGTCAACAAGACTATGTCTCATCTACCTACAAACCTGCCCGTTGCAACTCAGCTCAATGCTCCCTCGCAAACTCTAAGGCCTGCACTACAGAGTGCAACTCTTCCCCCAGGCCAGGCTGCAACAACAACACATGCAGTGTCCTCCCAGACAACTCCGTCATCCCCACAGCCGGTAACGGCGGTGAGGTAGGTCAAGACGTCGTCTCCCTCCACTCCACAGACGGTTCTAACCCTACCACGCTCGTTTCTGTTCCCAATTTCCTCTTCGCTTGTGCTGAAACCTTTCTCTTGGACCGCCTTGCGAGTGGTGTCAAGGGTATGGCTGGTCTTGGTAGAGCTAATATTGGACTTCCTTCTCTGTTTGCTTCCGCTTTTAGCTTCAAAAGAAAATTCGCCATTTGCTTGCCTTCCTCAACAAAATCATACGGTGCCGTTTTCTTCGGAGATGGCCCTTACAACCTTGTTCCTGGCATTGACGTCTCTATATCTCTTACTTACACCCCATTTCTCCTCAACCCTATCAACGACAAGGTCGTCACCTCATTCAACACTTCCTTGCTAACCATCGATGAAAACGGTTATGGCGGCACGAAGATCAGCACAGTTCATCCCTACACGGTCTTGGAGACGTCAATATACAACGCTGTTGTCAACGCATTTGTGAGTGAACTCTCTGATGTACCCAGAGTGACAGCCATAGCACCATTCGGAGCTTGCTTCAACTCAACCGCCATTGTTAGCACGCGTGCCGGCCTGGTTGTGCCTACCATCGACCTTGTGTTGCAGAGCGAGAGCGTGTACTGGAGAATCTTTGGGGCCAACTCGATGGTGCAGGTGACCAAGGACGTTGTGTGTTTAGGGTTTGTGGATAATGGTCAGAGCCCGAGTAACCCAAGAACTAATATTGTGATCGGAGGTCATCAGATTGAGGACAATCTTCTTCAATTCGATTTAGCTTCTTCTAGACTTGGGTTCAGCTCCTCTCTCTTGTACAGATCCAGACAAACAACTTGCGGCGACTTCAATTTCACATCAGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

423

Amino Acids

45.04

Weight (kDa)

7.91

Isoelectric Point (pI)

38.17

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 48 - 224 1.3e-44 Xylanase inhibitor N-terminal
TAXi_C PF14541 249 - 401 8.6e-52 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1048
AasI GACNNNNNNGTC 2 cut(s) 380, 758
AatII GACGTC 3 cut(s) 426, 705, 857
Acc36I ACCTGC 2 cut(s) 268, 1048
AccB1I GGYRCC 1 cut(s) 653
AccI GTMKAC 1 cut(s) 222
AccII CGCG 1 cut(s) 970
AciI CCGC 7 cut(s) 204, 405, 520, 594, 810, 954, 1239
AclWI GGATC 1 cut(s) 1215
AcsI RAATTY 1 cut(s) 614
AcyI GRCGYC 3 cut(s) 423, 702, 854
AfaI GTAC 3 cut(s) 906, 1025, 1217
AfiI CCNNNNNNNGG 2 cut(s) 338, 395
AflIII ACRYGT 1 cut(s) 968
AgsI TTSAA 5 cut(s) 607, 772, 946, 1169, 1249
AjnI CCWGG 5 cut(s) 102, 332, 337, 691, 978
AjuI GAANNNNNNNTTGG 4 cut(s) 71, 103, 473, 505
AluBI AGCT 6 cut(s) 278, 563, 603, 938, 1181, 1203
AluI AGCT 6 cut(s) 278, 563, 603, 938, 1181, 1203
Alw26I GTCTC 4 cut(s) 247, 433, 709, 845
AlwI GGATC 1 cut(s) 1215
Ama87I CYCGRG 1 cut(s) 1108
AoxI GGCC 5 cut(s) 303, 335, 673, 976, 1041
ApeKI GCWGC 1 cut(s) 342
ApoI RAATTY 1 cut(s) 614
Asp700I GAANNNNTTC 1 cut(s) 507
AspS9I GGNCC 3 cut(s) 517, 674, 1041
AsuHPI GGTGA 5 cut(s) 128, 139, 419, 754, 1072
AvaI CYCGRG 1 cut(s) 1108
AvaII GGWCC 1 cut(s) 517
BanI GGYRCC 1 cut(s) 653
BanII GRGCYC 1 cut(s) 1109
BbsI GAAGAC 1 cut(s) 43
BbvI GCAGC 1 cut(s) 329
BccI CCATC 5 cut(s) 76, 665, 797, 1001, 1045
BceAI ACGGC 2 cut(s) 418, 641
BciT130I CCWGG 5 cut(s) 104, 334, 339, 693, 980
BcoDI GTCTC 4 cut(s) 247, 433, 709, 845
BfaI CTAG 2 cut(s) 194, 1188
BfmI CTRYAG 1 cut(s) 312
BfuAI ACCTGC 2 cut(s) 268, 1048
BisI GCNGC 3 cut(s) 343, 811, 1240
BlsI GCNGC 3 cut(s) 344, 812, 1241
Bme1390I CCNGG 5 cut(s) 104, 334, 339, 693, 980
Bme18I GGWCC 1 cut(s) 517
BmeT110I CYCGRG 1 cut(s) 1108
BmgT120I GGNCC 3 cut(s) 517, 674, 1041
BmiI GGNNCC 2 cut(s) 655, 1042
BmrFI CCNGG 5 cut(s) 104, 334, 339, 693, 980
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 43
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpmI CTGGAG 1 cut(s) 1048
Bsa29I ATCGAT 1 cut(s) 792
BsaHI GRCGYC 3 cut(s) 423, 702, 854
BsaJI CCNNGG 4 cut(s) 102, 199, 332, 1065
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 413, 443
Bsc4I CCNNNNNNNGG 2 cut(s) 338, 395
Bse118I RCCGGY 2 cut(s) 395, 974
Bse1I ACTGG 1 cut(s) 1031
BseBI CCWGG 5 cut(s) 104, 334, 339, 693, 980
BseCI ATCGAT 1 cut(s) 792
BseDI CCNNGG 4 cut(s) 102, 199, 332, 1065
BseGI GGATG 2 cut(s) 384, 832
BseLI CCNNNNNNNGG 2 cut(s) 338, 395
BseMII CTCAG 1 cut(s) 288
BseNI ACTGG 1 cut(s) 1031
BseRI GAGGAG 2 cut(s) 725, 1195
BseXI GCAGC 1 cut(s) 329
BsgI GTGCAG 2 cut(s) 292, 1076
Bsh1236I CGCG 1 cut(s) 970
BshFI GGCC 5 cut(s) 305, 337, 675, 978, 1043
BshNI GGYRCC 1 cut(s) 653
BshVI ATCGAT 1 cut(s) 792
BsiHKCI CYCGRG 1 cut(s) 1108
BsiSI CCGG 3 cut(s) 113, 396, 975
BslFI GGGAC 2 cut(s) 78, 161
BslI CCNNNNNNNGG 2 cut(s) 338, 395
BsmAI GTCTC 4 cut(s) 247, 433, 709, 845
BsmBI CGTCTC 3 cut(s) 433, 709, 845
BsmFI GGGAC 2 cut(s) 78, 161
BsnI GGCC 5 cut(s) 305, 337, 675, 978, 1043
BsoBI CYCGRG 1 cut(s) 1108
Bsp1286I GDGCHC 1 cut(s) 1109
Bsp1407I TGTACA 1 cut(s) 1215
Bsp143I GATC 3 cut(s) 819, 1134, 1220
BspACI CCGC 7 cut(s) 204, 405, 520, 594, 810, 954, 1239
BspANI GGCC 5 cut(s) 305, 337, 675, 978, 1043
BspCNI CTCAG 1 cut(s) 287
BspDI ATCGAT 1 cut(s) 792
BspFNI CGCG 1 cut(s) 970
BspLI GGNNCC 2 cut(s) 655, 1042
BspMI ACCTGC 2 cut(s) 268, 1048
BspPI GGATC 1 cut(s) 1215
BspT107I GGYRCC 1 cut(s) 653
BsrFI RCCGGY 2 cut(s) 395, 974
BsrGI TGTACA 1 cut(s) 1215
BsrI ACTGG 1 cut(s) 1031
BssAI RCCGGY 2 cut(s) 395, 974
BssECI CCNNGG 4 cut(s) 102, 199, 332, 1065
BssMI GATC 3 cut(s) 819, 1134, 1220
BssNI GRCGYC 3 cut(s) 423, 702, 854
BssT1I CCWWGG 1 cut(s) 1065
Bst2UI CCWGG 5 cut(s) 104, 334, 339, 693, 980
Bst4CI ACNGT 6 cut(s) 227, 449, 653, 803, 829, 844
Bst6I CTCTTC 2 cut(s) 331, 494
BstACI GRCGYC 3 cut(s) 423, 702, 854
BstAUI TGTACA 1 cut(s) 1215
BstC8I GCNNGC 6 cut(s) 307, 629, 940, 968, 972, 976
BstDEI CTNAG 3 cut(s) 274, 300, 1266
BstEII GGTNACC 1 cut(s) 1060
BstF5I GGATG 2 cut(s) 384, 832
BstFNI CGCG 1 cut(s) 970
BstKTI GATC 3 cut(s) 822, 1137, 1223
BstMAI GTCTC 4 cut(s) 247, 433, 709, 845
BstMBI GATC 3 cut(s) 819, 1134, 1220
BstNI CCWGG 5 cut(s) 104, 334, 339, 693, 980
BstNSI RCATGY 1 cut(s) 360
BstPI GGTNACC 1 cut(s) 1060
BstSCI CCNGG 5 cut(s) 102, 332, 337, 691, 978
BstSFI CTRYAG 1 cut(s) 312
BstUI CGCG 1 cut(s) 970
BstV1I GCAGC 1 cut(s) 329
BstV2I GAAGAC 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 1220
BstXI CCANNNNNNTGG 2 cut(s) 103, 1051
BstYI RGATCY 1 cut(s) 1220
Bsu15I ATCGAT 1 cut(s) 792
BsuRI GGCC 5 cut(s) 305, 337, 675, 978, 1043
BsuTUI ATCGAT 1 cut(s) 792
BtgZI GCGATG 1 cut(s) 43
BtsCI GGATG 2 cut(s) 384, 832
BtsI GCAGTG 1 cut(s) 367
BtsIMutI CAGTG 1 cut(s) 367
BveI ACCTGC 2 cut(s) 268, 1048
Cac8I GCNNGC 6 cut(s) 307, 629, 940, 968, 972, 976
Cfr10I RCCGGY 2 cut(s) 395, 974
Cfr13I GGNCC 3 cut(s) 517, 674, 1041
ClaI ATCGAT 1 cut(s) 792
Csp6I GTAC 3 cut(s) 905, 1024, 1216
CviAII CATG 1 cut(s) 357
CviQI GTAC 3 cut(s) 905, 1024, 1216
DdeI CTNAG 3 cut(s) 274, 300, 1266
DpnI GATC 3 cut(s) 821, 1136, 1222
DpnII GATC 3 cut(s) 819, 1134, 1220
DrdI GACNNNNNNGTC 2 cut(s) 380, 758
DseDI GACNNNNNNGTC 2 cut(s) 380, 758
Eam1104I CTCTTC 2 cut(s) 331, 494
EarI CTCTTC 2 cut(s) 331, 494
Eco130I CCWWGG 1 cut(s) 1065
Eco147I AGGCCT 1 cut(s) 305
Eco24I GRGCYC 1 cut(s) 1109
Eco47I GGWCC 1 cut(s) 517
Eco88I CYCGRG 1 cut(s) 1108
Eco91I GGTNACC 1 cut(s) 1060
EcoO65I GGTNACC 1 cut(s) 1060
EcoRII CCWGG 5 cut(s) 102, 332, 337, 691, 978
EcoT14I CCWWGG 1 cut(s) 1065
EcoT38I GRGCYC 1 cut(s) 1109
ErhI CCWWGG 1 cut(s) 1065
Esp3I CGTCTC 3 cut(s) 433, 709, 845
FaeI CATG 1 cut(s) 360
FaiI YATR 8 cut(s) 240, 358, 545, 649, 710, 807, 862, 923
FaqI GGGAC 2 cut(s) 78, 161
FatI CATG 1 cut(s) 356
FblI GTMKAC 1 cut(s) 222
Fnu4HI GCNGC 3 cut(s) 343, 811, 1240
FokI GGATG 2 cut(s) 371, 819
FriOI GRGCYC 1 cut(s) 1109
Fsp4HI GCNGC 3 cut(s) 343, 811, 1240
FspBI CTAG 2 cut(s) 194, 1188
GluI GCNGC 3 cut(s) 343, 811, 1240
GsuI CTGGAG 1 cut(s) 1048
HaeIII GGCC 5 cut(s) 305, 337, 675, 978, 1043
HapII CCGG 3 cut(s) 113, 396, 975
Hin1I GRCGYC 3 cut(s) 423, 702, 854
Hin1II CATG 1 cut(s) 360
HincII GTYRAC 2 cut(s) 230, 877
HindII GTYRAC 2 cut(s) 230, 877
HinfI GANTC 1 cut(s) 1032
HpaII CCGG 3 cut(s) 113, 396, 975
HphI GGTGA 5 cut(s) 128, 139, 419, 754, 1072
Hpy166II GTNNAC 5 cut(s) 223, 230, 877, 893, 1024
Hpy188I TCNGA 6 cut(s) 668, 901, 935, 1104, 1139, 1149
Hpy188III TCNNGA 3 cut(s) 419, 1188, 1224
Hpy8I GTNNAC 5 cut(s) 223, 230, 877, 893, 1024
Hpy99I CGWCG 1 cut(s) 428
HpyAV CCTTC 2 cut(s) 588, 642
HpyCH4III ACNGT 6 cut(s) 227, 449, 653, 803, 829, 844
HpyCH4IV ACGT 4 cut(s) 423, 702, 854, 1071
HpyCH4V TGCA 7 cut(s) 270, 309, 321, 345, 360, 1009, 1057
HpyF3I CTNAG 3 cut(s) 274, 300, 1266
HpySE526I ACGT 4 cut(s) 423, 702, 854, 1071
Hsp92I GRCGYC 3 cut(s) 423, 702, 854
Hsp92II CATG 1 cut(s) 360
KroI GCCGGC 1 cut(s) 974
KroNI GCCGGC 1 cut(s) 976
Kzo9I GATC 3 cut(s) 819, 1134, 1220
LmnI GCTCC 3 cut(s) 290, 935, 1208
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 1 cut(s) 162
MaeI CTAG 2 cut(s) 194, 1188
MaeII ACGT 4 cut(s) 423, 702, 854, 1071
MaeIII GTNAC 5 cut(s) 398, 760, 913, 1060, 1112
MalI GATC 3 cut(s) 821, 1136, 1222
MboI GATC 3 cut(s) 819, 1134, 1220
MflI RGATCY 1 cut(s) 1220
MhlI GDGCHC 1 cut(s) 1109
MluCI AATT 5 cut(s) 7, 481, 614, 1169, 1249
MluI ACGCGT 1 cut(s) 968
MroNI GCCGGC 1 cut(s) 974
MroXI GAANNNNTTC 1 cut(s) 507
MspI CCGG 3 cut(s) 113, 396, 975
MspR9I CCNGG 5 cut(s) 104, 334, 339, 693, 980
MvaI CCWGG 5 cut(s) 104, 334, 339, 693, 980
MvnI CGCG 1 cut(s) 970
NaeI GCCGGC 1 cut(s) 976
NdeII GATC 3 cut(s) 819, 1134, 1220
NgoMIV GCCGGC 1 cut(s) 974
NlaIII CATG 1 cut(s) 360
NlaIV GGNNCC 2 cut(s) 655, 1042
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 3 cut(s) 760, 913, 1060
NspI RCATGY 1 cut(s) 360
PaqCI CACCTGC 1 cut(s) 1048
PceI AGGCCT 1 cut(s) 305
PcsI WCGNNNNNNNCGW 1 cut(s) 756
PdiI GCCGGC 1 cut(s) 976
PdmI GAANNNNTTC 1 cut(s) 507
PfeI GAWTC 1 cut(s) 1032
PflFI GACNNNGTC 3 cut(s) 239, 425, 755
PkrI GCNGC 3 cut(s) 344, 812, 1241
Psp6I CCWGG 5 cut(s) 102, 332, 337, 691, 978
PspEI GGTNACC 1 cut(s) 1060
PspGI CCWGG 5 cut(s) 102, 332, 337, 691, 978
PspN4I GGNNCC 2 cut(s) 655, 1042
PspPI GGNCC 3 cut(s) 517, 674, 1041
PsuI RGATCY 1 cut(s) 1220
PsyI GACNNNGTC 3 cut(s) 239, 425, 755
RsaI GTAC 3 cut(s) 906, 1025, 1217
RsaNI GTAC 3 cut(s) 905, 1024, 1216
SatI GCNGC 3 cut(s) 343, 811, 1240
Sau3AI GATC 3 cut(s) 819, 1134, 1220
Sau96I GGNCC 3 cut(s) 517, 674, 1041
ScrFI CCNGG 5 cut(s) 104, 334, 339, 693, 980
SduI GDGCHC 1 cut(s) 1109
SfaNI GCATC 1 cut(s) 162
SfcI CTRYAG 1 cut(s) 312
SinI GGWCC 1 cut(s) 517
Sse9I AATT 5 cut(s) 7, 481, 614, 1169, 1249
SseBI AGGCCT 1 cut(s) 305
SsiI CCGC 7 cut(s) 204, 405, 520, 594, 810, 954, 1239
SspI AATATT 2 cut(s) 568, 1129
SspMI CTAG 2 cut(s) 194, 1188
StuI AGGCCT 1 cut(s) 305
StyD4I CCNGG 5 cut(s) 102, 332, 337, 691, 978
StyI CCWWGG 1 cut(s) 1065
TaaI ACNGT 6 cut(s) 227, 449, 653, 803, 829, 844
TaiI ACGT 4 cut(s) 426, 705, 857, 1074
TaqI TCGA 4 cut(s) 792, 996, 1049, 1173
TasI AATT 5 cut(s) 7, 481, 614, 1169, 1249
TatI WGTACW 2 cut(s) 1023, 1215
TauI GCSGC 2 cut(s) 813, 1242
TfiI GAWTC 1 cut(s) 1032
TscAI CASTG 1 cut(s) 367
TseFI GTSAC 3 cut(s) 760, 913, 1060
TseI GCWGC 1 cut(s) 342
Tsp45I GTSAC 3 cut(s) 760, 913, 1060
TspDTI ATGAA 3 cut(s) 46, 810, 821
TspGWI ACGGA 2 cut(s) 80, 370
TspRI CASTG 1 cut(s) 367
Tth111I GACNNNGTC 3 cut(s) 239, 425, 755
VpaK11BI GGWCC 1 cut(s) 517
XapI RAATTY 1 cut(s) 614
XbaI TCTAGA 1 cut(s) 1187
XceI RCATGY 1 cut(s) 360
XmiI GTMKAC 1 cut(s) 222
XmnI GAANNNNTTC 1 cut(s) 507
XspI CTAG 2 cut(s) 194, 1188
ZraI GACGTC 3 cut(s) 424, 703, 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.