Rorug04G0150900

Belongs to the peptidase A1 family

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
26426283 .. 26426579
297 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0150900.1

Sequence Viewer

Length: 297 bp
ATGCGGGAGCTGTCTGGTGGGCTTCCCTTCCTTCGTTCATCAGTACTCAATTCAGTCATGATTTTAATTCACGTACTAGTTATCGATTCCTTTAGAGTTGTTTCTTTTTGTTTACGCACTGGTGTAGACGATTGTCTTGTGCACCTTGCTCGTTTTTTGTCTTCTGTTCATTGTTTTGGTTCTTATGTAGCTCGGGGTTCAGGTTTTATGTCCCCCCCGATGCAAAGTTTTATTTTAATAAATGGAACCGAGCGTGGGGCTGAGCCTCCCAGCTTGGCTGGGTTCCAAACCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

98

Amino Acids

10.65

Weight (kDa)

7.8

Isoelectric Point (pI)

52.09

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 126
AciI CCGC 1 cut(s) 4
AfaI GTAC 2 cut(s) 45, 75
AfiI CCNNNNNNNGG 1 cut(s) 255
AhlI ACTAGT 1 cut(s) 76
AluBI AGCT 3 cut(s) 10, 191, 273
AluI AGCT 3 cut(s) 10, 191, 273
Alw21I GWGCWC 1 cut(s) 144
Alw44I GTGCAC 1 cut(s) 140
Ama87I CYCGRG 1 cut(s) 192
ApaLI GTGCAC 1 cut(s) 140
AvaI CYCGRG 1 cut(s) 192
BaeGI GKGCMC 1 cut(s) 144
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 144
BcgI CGANNNNNNTGC 2 cut(s) 131, 165
BcuI ACTAGT 1 cut(s) 76
BfaI CTAG 1 cut(s) 77
BlpI GCTNAGC 1 cut(s) 261
BmcAI AGTACT 1 cut(s) 45
BmeT110I CYCGRG 1 cut(s) 192
BmiI GGNNCC 2 cut(s) 247, 284
BmsI GCATC 1 cut(s) 210
BoxI GACNNNNGTC 1 cut(s) 132
BpiI GAAGAC 1 cut(s) 153
Bpu1102I GCTNAGC 1 cut(s) 261
Bsa29I ATCGAT 1 cut(s) 84
BsaAI YACGTR 1 cut(s) 73
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 124
BseCI ATCGAT 1 cut(s) 84
BseLI CCNNNNNNNGG 1 cut(s) 255
BseMII CTCAG 1 cut(s) 252
BseNI ACTGG 1 cut(s) 124
BseSI GKGCMC 1 cut(s) 144
BseYI CCCAGC 2 cut(s) 269, 278
BshVI ATCGAT 1 cut(s) 84
BsiHKAI GWGCWC 1 cut(s) 144
BsiHKCI CYCGRG 1 cut(s) 192
BslFI GGGAC 1 cut(s) 196
BslI CCNNNNNNNGG 1 cut(s) 255
BsmFI GGGAC 1 cut(s) 196
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 144
Bsp1720I GCTNAGC 1 cut(s) 261
BspACI CCGC 1 cut(s) 4
BspCNI CTCAG 1 cut(s) 253
BspDI ATCGAT 1 cut(s) 84
BspHI TCATGA 1 cut(s) 57
BspLI GGNNCC 2 cut(s) 247, 284
BsrI ACTGG 1 cut(s) 124
BstBAI YACGTR 1 cut(s) 73
BstDEI CTNAG 1 cut(s) 261
BstPAI GACNNNNGTC 1 cut(s) 132
BstSLI GKGCMC 1 cut(s) 144
BstV2I GAAGAC 1 cut(s) 153
Bsu15I ATCGAT 1 cut(s) 84
BsuTUI ATCGAT 1 cut(s) 84
BtsIMutI CAGTG 1 cut(s) 117
CciI TCATGA 1 cut(s) 57
ClaI ATCGAT 1 cut(s) 84
Csp6I GTAC 2 cut(s) 44, 74
CviAII CATG 1 cut(s) 58
CviJI RGCY 7 cut(s) 10, 22, 191, 260, 265, 273, 278
CviKI_1 RGCY 7 cut(s) 10, 22, 191, 260, 265, 273, 278
CviQI GTAC 2 cut(s) 44, 74
DdeI CTNAG 1 cut(s) 261
Eco88I CYCGRG 1 cut(s) 192
FaeI CATG 1 cut(s) 61
FaiI YATR 3 cut(s) 59, 186, 209
FaqI GGGAC 1 cut(s) 196
FatI CATG 1 cut(s) 57
FblI GTMKAC 1 cut(s) 126
FspBI CTAG 1 cut(s) 77
GsaI CCCAGC 2 cut(s) 273, 282
Hin1II CATG 1 cut(s) 61
HinfI GANTC 1 cut(s) 86
Hpy166II GTNNAC 3 cut(s) 113, 127, 142
Hpy188III TCNNGA 1 cut(s) 58
Hpy8I GTNNAC 3 cut(s) 113, 127, 142
HpyAV CCTTC 2 cut(s) 37, 41
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 142, 223
HpyF3I CTNAG 1 cut(s) 261
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 1 cut(s) 61
LmnI GCTCC 1 cut(s) 7
LpnPI CCDG 4 cut(s) 105, 186, 264, 283
LweI GCATC 1 cut(s) 210
MaeI CTAG 1 cut(s) 77
MaeII ACGT 1 cut(s) 72
MboII GAAGA 1 cut(s) 153
MhlI GDGCHC 1 cut(s) 144
MluCI AATT 2 cut(s) 49, 66
MnlI CCTC 1 cut(s) 276
MseI TTAA 3 cut(s) 65, 236, 295
NlaIII CATG 1 cut(s) 61
NlaIV GGNNCC 2 cut(s) 247, 284
PagI TCATGA 1 cut(s) 57
PfeI GAWTC 1 cut(s) 86
Ppu21I YACGTR 1 cut(s) 73
PshAI GACNNNNGTC 1 cut(s) 132
PspFI CCCAGC 2 cut(s) 269, 278
PspN4I GGNNCC 2 cut(s) 247, 284
RsaI GTAC 2 cut(s) 45, 75
RsaNI GTAC 2 cut(s) 44, 74
SaqAI TTAA 3 cut(s) 65, 236, 295
ScaI AGTACT 1 cut(s) 45
SduI GDGCHC 1 cut(s) 144
SetI ASST 6 cut(s) 12, 75, 147, 193, 205, 275
SfaNI GCATC 1 cut(s) 210
SpeI ACTAGT 1 cut(s) 76
Sse9I AATT 2 cut(s) 49, 66
SsiI CCGC 1 cut(s) 4
SspMI CTAG 1 cut(s) 77
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 84
TasI AATT 2 cut(s) 49, 66
TatI WGTACW 1 cut(s) 43
TfiI GAWTC 1 cut(s) 86
Tru1I TTAA 3 cut(s) 65, 236, 295
Tru9I TTAA 3 cut(s) 65, 236, 295
TscAI CASTG 1 cut(s) 124
TspDTI ATGAA 2 cut(s) 27, 158
TspRI CASTG 1 cut(s) 124
VneI GTGCAC 1 cut(s) 140
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 77
ZrmI AGTACT 1 cut(s) 45
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.