Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000032.1

Orthogroup ID

OG0000716

Physical Location & Seq

Genomic Coordinates Forward (+)

134482 .. 135720

Gene Structure 1239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000032.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

atggcttcctcatcatttctttgccttactctcctttcctcactcgtcttcttcatcgccactccatcactagcagaaacatctttccggcccaaagccctcgttcttccggtagctaaacactctcccactcaccaatacctcaccagcatcaagcaaagaacccctcttgttcctgttagactaaccctagacctcggcggtcagttcctttgggtagactgtcaacaaggctatgtctcatctacctacaaacctgcccgttgcaactcggctcaattctcactcgcaaactctaatgcgtgtacaacagagtgcgattcttcccccaagccaggctgcaacaacaacacatgtagtgtcctcccagacaactccgtgatccctacgtccggcaatggcggggaggtaggtcaagacgtcgtctccctccattccacaaatgggtctaaccctaccacactagtttatgttcctaacctcctcttcgcttgtgctgaaatttttctattggatcgccttgcaagtggtgtcaaaggtatggctggtcttggtagagctaaaattggacttccttatctatttgcttcctcttttagcttcaaaagaaaattcaccattttcttgccctcctcaacaaaatcatacgatgccgttttcttcggagatgggccttacaacctttttcttgggattgacatctctcaatctcttatttacacctcattgctcctcaaccctgtaagcactgccagtgcctattttcaaggcgatgcttctacggaatacttcatcaatgtaacgtcaatcaagatcaacgacaaggtcgtttcgtcatttaacagttccttgctaaccattgacggaaatggttatggcggcacgaagatcaacacggtgcatccctacacggtcttggagatgtcaatctacaactctttggtcaatgcatttgtcagtgaactctctcatgtacccagagtgacactggtagcaccattcggagcttgcttcaactcaaccaacattgtcagcacgagtgttggcctggctatgccaaccatcgaccttgtgttgcagagtgagagcgtgtactggagaatctttggtgcaaactcgatggtgcaggtgaccaaggacgtcctgcgtttagggtttgtggacaatggtcagagcccaagtaatcctagaactaatattgtgatcggaggccatcagattgcaaacaatcttctttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

412

Amino Acids

44.22

Weight (kDa)

8.02

Isoelectric Point (pI)

36.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03220 AT1G03230
fragaria_vesca	FvH4_2g23780 FvH4_4g14611 FvH4_4g14611 FvH4_4g14640 FvH4_4g14660 FvH4_4g14670
malus_domestica	MD11G1287900.v1.1 MD13G1184500.v1.1 MD13G1184800.v1.1 MD13G1184900.v1.1 MD16G1185000.v1.1 MD16G1185100.v1.1 MD16G1185300.v1.1
prunus_persica	Prupe.1G152100_v2.0.a1 Prupe.1G152200_v2.0.a1 Prupe.8G243100_v2.0.a1
pyrus_communis	pycom11g25550 pycom13g15900 pycom13g15920 pycom16g15520
rosa_chinensis	RchiOBHm_Chr4g0417891 RchiOBHm_Chr4g0417921 RchiOBHm_Chr4g0417961 RchiOBHm_Chr4g0417971 RchiOBHm_Chr4g0417981 RchiOBHm_Chr6g0291301
rosa_laevigata	RLG00000007886 RLG00000007887 RLG00000007888 RLG00000007889 RLG00000007890 RLG00000012125
rosa_multiflora	Rmu_co8285195.1_g000001 Rmu_sc0000032.1_g000028
rosa_roxburghii	Rroxscaffold_160G00433800 Rroxscaffold_4G00327990 Rroxscaffold_5G00361320 Rroxscaffold_5G00361330 Rroxscaffold_5G00361340 Rroxscaffold_5G00361370 Rroxscaffold_5G00361380
rosa_rugosa	Rorug04G0150200 Rorug04G0150300 Rorug04G0150900 Rorug04G0151100 Rorug06G0218600
rosa_samantha	Rh4AG212500 Rh4AG212600 Rh4BG218100 Rh4BG218200 Rh4BG218300 Rh4BG218400 Rh4BG218500 Rh4CG223500 Rh4CG224100 Rh4CG224200 Rh4CG224500 Rh4DG210500 Rh4DG210800 Rh4DG211000 Rh4DG211100 Rh6AG330600 Rh6BG337500 Rh6BG337600 Rh6CG343900 Rh6DG330900
rosa_wichuraiana	Rw4G018040 Rw4G018050 Rw4G018060 Rw4G018070 Rw6G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1117
AatII	GACGTC	2 cut(s)	423, 1143
Acc36I	ACCTGC	2 cut(s)	265, 1117
AccI	GTMKAC	1 cut(s)	219
AciI	CCGC	3 cut(s)	201, 402, 879
AclWI	GGATC	2 cut(s)	376, 522
AcsI	RAATTY	2 cut(s)	501, 611
AcyI	GRCGYC	2 cut(s)	420, 1140
AfaI	GTAC	3 cut(s)	307, 975, 1094
AfiI	CCNNNNNNNGG	3 cut(s)	335, 392, 444
AflIII	ACRYGT	1 cut(s)	353
AgsI	TTSAA	3 cut(s)	604, 767, 1015
AhlI	ACTAGT	1 cut(s)	463
AjnI	CCWGG	2 cut(s)	334, 1047
AluBI	AGCT	4 cut(s)	116, 560, 600, 1007
AluI	AGCT	4 cut(s)	116, 560, 600, 1007
Alw26I	GTCTC	2 cut(s)	244, 430
AlwI	GGATC	2 cut(s)	376, 522
AoxI	GGCC	4 cut(s)	89, 671, 1045, 1210
ApeKI	GCWGC	1 cut(s)	339
ApoI	RAATTY	2 cut(s)	501, 611
Asp700I	GAANNNNTTC	1 cut(s)	504
AspS9I	GGNCC	2 cut(s)	90, 671
AsuHPI	GGTGA	4 cut(s)	125, 136, 607, 1141
BanII	GRGCYC	1 cut(s)	1178
BauI	CACGAG	1 cut(s)	1036
BbsI	GAAGAC	1 cut(s)	40
BbvI	GCAGC	1 cut(s)	326
BccI	CCATC	5 cut(s)	73, 662, 1070, 1114, 1221
BceAI	ACGGC	1 cut(s)	638
BciT130I	CCWGG	2 cut(s)	336, 1049
BcoDI	GTCTC	2 cut(s)	244, 430
BcuI	ACTAGT	1 cut(s)	463
BfaI	CTAG	4 cut(s)	71, 191, 464, 1188
BfuAI	ACCTGC	2 cut(s)	265, 1117
BisI	GCNGC	2 cut(s)	340, 880
BlsI	GCNGC	2 cut(s)	341, 881
Bme1390I	CCNGG	2 cut(s)	336, 1049
BmgT120I	GGNCC	2 cut(s)	90, 671
BmrFI	CCNGG	2 cut(s)	336, 1049
BmsI	GCATC	4 cut(s)	159, 640, 763, 910
BoxI	GACNNNNGTC	1 cut(s)	1167
BpiI	GAAGAC	1 cut(s)	40
BpmI	CTGGAG	1 cut(s)	1117
BsaBI	GATNNNNATC	2 cut(s)	698, 926
BsaHI	GRCGYC	2 cut(s)	420, 1140
BsaJI	CCNNGG	2 cut(s)	196, 1134
BsaWI	WCCGGW	1 cut(s)	109
BsaXI	ACNNNNNCTCC	2 cut(s)	410, 440
Bsc4I	CCNNNNNNNGG	3 cut(s)	335, 392, 444
Bse1I	ACTGG	3 cut(s)	753, 993, 1100
Bse3DI	GCAATG	2 cut(s)	403, 725
Bse8I	GATNNNNATC	2 cut(s)	698, 926
BseBI	CCWGG	2 cut(s)	336, 1049
BseDI	CCNNGG	2 cut(s)	196, 1134
BseGI	GGATG	1 cut(s)	901
BseJI	GATNNNNATC	2 cut(s)	698, 926
BseLI	CCNNNNNNNGG	3 cut(s)	335, 392, 444
BseMI	GCAATG	2 cut(s)	403, 725
BseNI	ACTGG	3 cut(s)	753, 993, 1100
BseRI	GAGGAG	3 cut(s)	473, 622, 722
BseXI	GCAGC	1 cut(s)	326
BsgI	GTGCAG	1 cut(s)	1145
BshFI	GGCC	4 cut(s)	91, 673, 1047, 1212
BsiSI	CCGG	3 cut(s)	88, 110, 393
BslI	CCNNNNNNNGG	3 cut(s)	335, 392, 444
BsmAI	GTCTC	2 cut(s)	244, 430
BsmBI	CGTCTC	1 cut(s)	430
BsnI	GGCC	4 cut(s)	91, 673, 1047, 1212
Bsp1286I	GDGCHC	1 cut(s)	1178
Bsp1407I	TGTACA	1 cut(s)	305
Bsp143I	GATC	5 cut(s)	381, 514, 813, 888, 1203
BspACI	CCGC	3 cut(s)	201, 402, 879
BspANI	GGCC	4 cut(s)	91, 673, 1047, 1212
BspMI	ACCTGC	2 cut(s)	265, 1117
BspPI	GGATC	2 cut(s)	376, 522
BsrDI	GCAATG	2 cut(s)	403, 725
BsrGI	TGTACA	1 cut(s)	305
BsrI	ACTGG	3 cut(s)	753, 993, 1100
BssECI	CCNNGG	2 cut(s)	196, 1134
BssMI	GATC	5 cut(s)	381, 514, 813, 888, 1203
BssNI	GRCGYC	2 cut(s)	420, 1140
BssSI	CACGAG	1 cut(s)	1036
BssT1I	CCWWGG	1 cut(s)	1134
Bst2BI	CACGAG	1 cut(s)	1036
Bst2UI	CCWGG	2 cut(s)	336, 1049
Bst4CI	ACNGT	4 cut(s)	224, 845, 898, 913
Bst6I	CTCTTC	1 cut(s)	491
BstACI	GRCGYC	2 cut(s)	420, 1140
BstAUI	TGTACA	1 cut(s)	305
BstC8I	GCNNGC	1 cut(s)	1009
BstEII	GGTNACC	1 cut(s)	1129
BstF5I	GGATG	1 cut(s)	901
BstKTI	GATC	5 cut(s)	384, 517, 816, 891, 1206
BstMAI	GTCTC	2 cut(s)	244, 430
BstMBI	GATC	5 cut(s)	381, 514, 813, 888, 1203
BstNI	CCWGG	2 cut(s)	336, 1049
BstNSI	RCATGY	1 cut(s)	357
BstPAI	GACNNNNGTC	1 cut(s)	1167
BstPI	GGTNACC	1 cut(s)	1129
BstSCI	CCNGG	2 cut(s)	334, 1047
BstV1I	GCAGC	1 cut(s)	326
BstV2I	GAAGAC	1 cut(s)	40
BsuRI	GGCC	4 cut(s)	91, 673, 1047, 1212
BtgZI	GCGATG	2 cut(s)	40, 786
BtsCI	GGATG	1 cut(s)	901
BtsI	GCAGTG	1 cut(s)	747
BtsIMutI	CAGTG	4 cut(s)	747, 760, 964, 986
BveI	ACCTGC	2 cut(s)	265, 1117
Cac8I	GCNNGC	1 cut(s)	1009
Cfr13I	GGNCC	2 cut(s)	90, 671
Csp6I	GTAC	3 cut(s)	306, 974, 1093
CviAII	CATG	2 cut(s)	354, 971
CviQI	GTAC	3 cut(s)	306, 974, 1093
DpnI	GATC	5 cut(s)	383, 516, 815, 890, 1205
DpnII	GATC	5 cut(s)	381, 514, 813, 888, 1203
Eam1104I	CTCTTC	1 cut(s)	491
EarI	CTCTTC	1 cut(s)	491
Eco130I	CCWWGG	1 cut(s)	1134
Eco24I	GRGCYC	1 cut(s)	1178
Eco91I	GGTNACC	1 cut(s)	1129
EcoO65I	GGTNACC	1 cut(s)	1129
EcoRII	CCWGG	2 cut(s)	334, 1047
EcoT14I	CCWWGG	1 cut(s)	1134
EcoT22I	ATGCAT	1 cut(s)	952
EcoT38I	GRGCYC	1 cut(s)	1178
ErhI	CCWWGG	1 cut(s)	1134
Esp3I	CGTCTC	1 cut(s)	430
FaeI	CATG	2 cut(s)	357, 974
FaiI	YATR	8 cut(s)	237, 355, 471, 542, 646, 876, 972, 1055
FatI	CATG	2 cut(s)	353, 970
FauI	CCCGC	1 cut(s)	395
FblI	GTMKAC	1 cut(s)	219
Fnu4HI	GCNGC	2 cut(s)	340, 880
FokI	GGATG	1 cut(s)	888
FriOI	GRGCYC	1 cut(s)	1178
Fsp4HI	GCNGC	2 cut(s)	340, 880
FspBI	CTAG	4 cut(s)	71, 191, 464, 1188
GluI	GCNGC	2 cut(s)	340, 880
GsuI	CTGGAG	1 cut(s)	1117
HaeIII	GGCC	4 cut(s)	91, 673, 1047, 1212
HapII	CCGG	3 cut(s)	88, 110, 393
Hin1I	GRCGYC	2 cut(s)	420, 1140
Hin1II	CATG	2 cut(s)	357, 974
HincII	GTYRAC	1 cut(s)	227
HindII	GTYRAC	1 cut(s)	227
HinfI	GANTC	2 cut(s)	320, 1101
HpaII	CCGG	3 cut(s)	88, 110, 393
HphI	GGTGA	4 cut(s)	125, 136, 607, 1141
Hpy166II	GTNNAC	6 cut(s)	220, 227, 306, 962, 1093, 1162
Hpy188I	TCNGA	5 cut(s)	665, 1004, 1173, 1208, 1218
Hpy188III	TCNNGA	2 cut(s)	416, 811
Hpy8I	GTNNAC	6 cut(s)	220, 227, 306, 962, 1093, 1162
Hpy99I	CGWCG	1 cut(s)	425
HpyCH4III	ACNGT	4 cut(s)	224, 845, 898, 913
HpyCH4IV	ACGT	4 cut(s)	389, 420, 803, 1140
HpyCH4V	TGCA	9 cut(s)	267, 342, 524, 901, 950, 1078, 1112, 1126, 1223
HpySE526I	ACGT	4 cut(s)	389, 420, 803, 1140
Hsp92I	GRCGYC	2 cut(s)	420, 1140
Hsp92II	CATG	2 cut(s)	357, 974
Kzo9I	GATC	5 cut(s)	381, 514, 813, 888, 1203
LmnI	GCTCC	2 cut(s)	735, 1004
Lsp1109I	GCAGC	1 cut(s)	326
LweI	GCATC	4 cut(s)	159, 640, 763, 910
MaeI	CTAG	4 cut(s)	71, 191, 464, 1188
MaeII	ACGT	4 cut(s)	389, 420, 803, 1140
MaeIII	GTNAC	3 cut(s)	799, 982, 1129
MalI	GATC	5 cut(s)	383, 516, 815, 890, 1205
MboI	GATC	5 cut(s)	381, 514, 813, 888, 1203
MboII	GAAGA	8 cut(s)	40, 43, 98, 315, 478, 652, 898, 1223
MhlI	GDGCHC	1 cut(s)	1178
MluCI	AATT	4 cut(s)	278, 501, 564, 611
Mph1103I	ATGCAT	1 cut(s)	952
MroXI	GAANNNNTTC	1 cut(s)	504
MseI	TTAA	1 cut(s)	840
MspI	CCGG	3 cut(s)	88, 110, 393
MspR9I	CCNGG	2 cut(s)	336, 1049
MvaI	CCWGG	2 cut(s)	336, 1049
NdeII	GATC	5 cut(s)	381, 514, 813, 888, 1203
NlaIII	CATG	2 cut(s)	357, 974
NmeAIII	GCCGAG	2 cut(s)	177, 251
NmuCI	GTSAC	2 cut(s)	982, 1129
NsiI	ATGCAT	1 cut(s)	952
NspI	RCATGY	1 cut(s)	357
PaqCI	CACCTGC	1 cut(s)	1117
PciI	ACATGT	1 cut(s)	353
PcsI	WCGNNNNNNNCGW	1 cut(s)	825
PdmI	GAANNNNTTC	1 cut(s)	504
PfeI	GAWTC	2 cut(s)	320, 1101
PflFI	GACNNNGTC	2 cut(s)	422, 824
PkrI	GCNGC	2 cut(s)	341, 881
PscI	ACATGT	1 cut(s)	353
PshAI	GACNNNNGTC	1 cut(s)	1167
Psp6I	CCWGG	2 cut(s)	334, 1047
PspEI	GGTNACC	1 cut(s)	1129
PspGI	CCWGG	2 cut(s)	334, 1047
PspPI	GGNCC	2 cut(s)	90, 671
PsyI	GACNNNGTC	2 cut(s)	422, 824
RsaI	GTAC	3 cut(s)	307, 975, 1094
RsaNI	GTAC	3 cut(s)	306, 974, 1093
SaqAI	TTAA	1 cut(s)	840
SatI	GCNGC	2 cut(s)	340, 880
Sau3AI	GATC	5 cut(s)	381, 514, 813, 888, 1203
Sau96I	GGNCC	2 cut(s)	90, 671
ScrFI	CCNGG	2 cut(s)	336, 1049
SduI	GDGCHC	1 cut(s)	1178
SfaNI	GCATC	4 cut(s)	159, 640, 763, 910
SpeI	ACTAGT	1 cut(s)	463
Sse9I	AATT	4 cut(s)	278, 501, 564, 611
SsiI	CCGC	3 cut(s)	201, 402, 879
SspI	AATATT	1 cut(s)	1198
SspMI	CTAG	4 cut(s)	71, 191, 464, 1188
StyD4I	CCNGG	2 cut(s)	334, 1047
StyI	CCWWGG	1 cut(s)	1134
TaaI	ACNGT	4 cut(s)	224, 845, 898, 913
TaiI	ACGT	4 cut(s)	392, 423, 806, 1143
TaqI	TCGA	2 cut(s)	1065, 1118
TasI	AATT	4 cut(s)	278, 501, 564, 611
TatI	WGTACW	2 cut(s)	305, 1092
TauI	GCSGC	1 cut(s)	882
TfiI	GAWTC	2 cut(s)	320, 1101
Tru1I	TTAA	1 cut(s)	840
Tru9I	TTAA	1 cut(s)	840
TscAI	CASTG	4 cut(s)	754, 760, 964, 993
TseFI	GTSAC	2 cut(s)	982, 1129
TseI	GCWGC	1 cut(s)	339
Tsp45I	GTSAC	2 cut(s)	982, 1129
TspDTI	ATGAA	2 cut(s)	43, 781
TspGWI	ACGGA	3 cut(s)	367, 797, 879
TspRI	CASTG	4 cut(s)	754, 760, 964, 993
Tth111I	GACNNNGTC	2 cut(s)	422, 824
XapI	RAATTY	2 cut(s)	501, 611
XceI	RCATGY	1 cut(s)	357
XcmI	CCANNNNNNNNNTGG	2 cut(s)	440, 985
XmiI	GTMKAC	1 cut(s)	219
XmnI	GAANNNNTTC	1 cut(s)	504
XspI	CTAG	4 cut(s)	71, 191, 464, 1188
ZraI	GACGTC	2 cut(s)	421, 1141
Zsp2I	ATGCAT	1 cut(s)	952

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.