Rroxscaffold_5G00361330

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000716
Physical Location & Seq
Reverse (-)
42005606 .. 42006948
1343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361330.1

Sequence Viewer

Length: 1158 bp
ATGGCTTCCTCATCCTTTAGCCACCTTCTCTTGTGCTCAGTAGCTATCATTTTCCACATGATATTCATCATCAGCCCCTCCGAAGCCAAAACGTCATTTAGACCCAAGGCCCTTGTCCTTCCGGTATCCAAACACACTTCCGGCGCAATCCAATACCTCACAAGCATCAAGCAAAGAACTCCCCTAGTCCCCGTGAGACTAACCCTCGATCTCGGCGGTACATTCCTTTGGGTAGATTCCGAGGACCGCTATGTCTCTTCTACCTACAAGCCTGCCCGTTGCGGATCAGCGCAATGCTCACTCGCAAGGTCCAAGCGTTGTTTCGAGTGCTTGTCTCCACCTAGACCAGGTTGCTGCAACAACACATGTAATCTCATGTCATTAAACTCTGTGCTCGGATCGGGAGGTAACTTCGATCAGGTCGGTCAAGATGTTATCTCACTTCACTCCACAGATGGGTCTAATCCTACCAAGATCGTTTCTATTCCCAACTTACTGTTCGTTTGCAGCCAAACATTTCTCTTGACACAACTTGCACCTGGTGTCAAGGGTATTGCTGGCCTTGGCAGGACTAAAATTGGGCTCCCTTCCCAATTTGCTTCCACTTTTAGCTTCAAAAGAAAATTCGCCGTTTGCTTGCCCTCCTCAAGAAGATCATACGGTGTCGTATTCTTCGGGGACGAAGGCGAGCCTTCCTCAGAATATTTCATCAACGTAACGTCAATCAAGATCAACGGAAAGGTTGTTTCCGGATTCAACACTTCCTTGCTGACAATCGACAAAGACGGGTATGGAGGCACAAAGATTAGCAGCGTCAATCCTTACACAGTCATGAAGACCTCGATCTACAACGCTTTCGTTGATCACTTTACTAAAGAGCTCTCTGGAGTGCCAAGAGTGACACCCAGCGAAAGCGTGTACTGGAGGATCTTTGGGGCAAACTCGATGGTGCAGGTGAGCCAGGACGTGCTGTGCTTAGGGTTTGTAGATAACGGTCAGAGCCCGAGTAACCCTAGAACTAATATTGTGATTGGTGCGCATCAAATTGAGGATAATCTTCTTCAGTTTGATTTGGCTTCTTCTAGGCTTGGATTCAGCTCCTCTCTCTTGTTCCGACAGACCACTTGCGCTAACTTCAACTTCACTTCTGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

385

Amino Acids

41.73

Weight (kDa)

9.13

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 52 - 227 4.4e-41 Xylanase inhibitor N-terminal
TAXi_C PF14541 234 - 303 5.5e-18 Xylanase inhibitor C-terminal
TAXi_C PF14541 306 - 366 2.3e-20 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 943
AasI GACNNNNNNGTC 1 cut(s) 251
Acc16I TGCGCA 1 cut(s) 1038
Acc36I ACCTGC 1 cut(s) 943
AccIII TCCGGA 1 cut(s) 749
AciI CCGC 3 cut(s) 216, 247, 282
AclWI GGATC 3 cut(s) 292, 406, 935
AcsI RAATTY 1 cut(s) 623
AcuI CTGAAG 1 cut(s) 1046
AdeI CACNNNGTG 1 cut(s) 542
AfaI GTAC 2 cut(s) 220, 920
AfiI CCNNNNNNNGG 2 cut(s) 347, 456
AflIII ACRYGT 1 cut(s) 365
AgsI TTSAA 3 cut(s) 616, 757, 1138
AjiI CACGTC 1 cut(s) 967
AjnI CCWGG 3 cut(s) 346, 538, 960
AjuI GAANNNNNNNTTGG 4 cut(s) 305, 337, 482, 514
AluBI AGCT 4 cut(s) 44, 612, 880, 1098
AluI AGCT 4 cut(s) 44, 612, 880, 1098
Alw21I GWGCWC 3 cut(s) 38, 396, 882
Alw26I GTCTC 3 cut(s) 190, 259, 339
AlwI GGATC 3 cut(s) 292, 406, 935
Ama87I CYCGRG 1 cut(s) 1003
Aor13HI TCCGGA 1 cut(s) 749
AoxI GGCC 2 cut(s) 108, 559
ApeKI GCWGC 3 cut(s) 354, 507, 810
ApoI RAATTY 1 cut(s) 623
AspLEI GCGC 4 cut(s) 146, 292, 1039, 1130
AspS9I GGNCC 3 cut(s) 109, 244, 309
AsuHPI GGTGA 1 cut(s) 967
AvaI CYCGRG 1 cut(s) 1003
AvaII GGWCC 2 cut(s) 244, 309
BanII GRGCYC 3 cut(s) 585, 882, 1004
BbsI GAAGAC 1 cut(s) 842
Bbv12I GWGCWC 3 cut(s) 38, 396, 882
BbvI GCAGC 3 cut(s) 341, 519, 822
BccI CCATC 2 cut(s) 449, 940
BceAI ACGGC 1 cut(s) 614
BciT130I CCWGG 3 cut(s) 348, 540, 962
BciVI GTATCC 1 cut(s) 136
BclI TGATCA 1 cut(s) 862
BcoDI GTCTC 3 cut(s) 190, 259, 339
BfaI CTAG 4 cut(s) 185, 342, 1014, 1083
BfuAI ACCTGC 1 cut(s) 943
BfuI GTATCC 1 cut(s) 136
BisI GCNGC 3 cut(s) 355, 508, 811
BlsI GCNGC 3 cut(s) 356, 509, 812
Bme1390I CCNGG 3 cut(s) 348, 540, 962
Bme18I GGWCC 2 cut(s) 244, 309
BmeT110I CYCGRG 1 cut(s) 1003
BmgBI CACGTC 1 cut(s) 967
BmgT120I GGNCC 3 cut(s) 109, 244, 309
BmiI GGNNCC 1 cut(s) 584
BmrFI CCNGG 3 cut(s) 348, 540, 962
BmsI GCATC 2 cut(s) 174, 1048
BpiI GAAGAC 1 cut(s) 842
BplI GAGNNNNNCTC 2 cut(s) 680, 712
BpmI CTGGAG 2 cut(s) 906, 943
Bpu10I CCTNAGC 1 cut(s) 976
BpuEI CTTGAG 1 cut(s) 631
BsaBI GATNNNNATC 1 cut(s) 65
BsaJI CCNNGG 3 cut(s) 105, 240, 562
BsaWI WCCGGW 2 cut(s) 121, 749
Bsc4I CCNNNNNNNGG 2 cut(s) 347, 456
Bse1I ACTGG 1 cut(s) 926
Bse3DI GCAATG 1 cut(s) 299
Bse8I GATNNNNATC 1 cut(s) 65
BseAI TCCGGA 1 cut(s) 749
BseBI CCWGG 3 cut(s) 348, 540, 962
BseDI CCNNGG 3 cut(s) 105, 240, 562
BseGI GGATG 1 cut(s) 11
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 2 cut(s) 347, 456
BseMI GCAATG 1 cut(s) 299
BseMII CTCAG 2 cut(s) 51, 711
BseNI ACTGG 1 cut(s) 926
BseRI GAGGAG 2 cut(s) 634, 1090
BseXI GCAGC 3 cut(s) 341, 519, 822
BseYI CCCAGC 1 cut(s) 905
BsgI GTGCAG 1 cut(s) 971
BshFI GGCC 2 cut(s) 110, 561
BsiHKAI GWGCWC 3 cut(s) 38, 396, 882
BsiHKCI CYCGRG 1 cut(s) 1003
BsiSI CCGG 3 cut(s) 122, 141, 750
BslFI GGGAC 2 cut(s) 173, 692
BslI CCNNNNNNNGG 2 cut(s) 347, 456
BsmAI GTCTC 3 cut(s) 190, 259, 339
BsmFI GGGAC 2 cut(s) 173, 692
BsnI GGCC 2 cut(s) 110, 561
BsoBI CYCGRG 1 cut(s) 1003
Bsp1286I GDGCHC 5 cut(s) 38, 396, 585, 882, 1004
Bsp13I TCCGGA 1 cut(s) 749
BspACI CCGC 3 cut(s) 216, 247, 282
BspANI GGCC 2 cut(s) 110, 561
BspCNI CTCAG 2 cut(s) 50, 710
BspEI TCCGGA 1 cut(s) 749
BspHI TCATGA 1 cut(s) 831
BspLI GGNNCC 1 cut(s) 584
BspMI ACCTGC 1 cut(s) 943
BspPI GGATC 3 cut(s) 292, 406, 935
BsrDI GCAATG 1 cut(s) 299
BsrI ACTGG 1 cut(s) 926
BssECI CCNNGG 3 cut(s) 105, 240, 562
BssT1I CCWWGG 2 cut(s) 105, 562
Bst2UI CCWGG 3 cut(s) 348, 540, 962
Bst4CI ACNGT 4 cut(s) 498, 662, 829, 995
Bst6I CTCTTC 1 cut(s) 262
BstC8I GCNNGC 4 cut(s) 273, 559, 638, 689
BstDEI CTNAG 4 cut(s) 37, 697, 976, 1155
BstENI CCTNNNNNAGG 1 cut(s) 345
BstF5I GGATG 1 cut(s) 11
BstHHI GCGC 4 cut(s) 146, 292, 1039, 1130
BstMAI GTCTC 3 cut(s) 190, 259, 339
BstNI CCWGG 3 cut(s) 348, 540, 962
BstNSI RCATGY 1 cut(s) 369
BstSCI CCNGG 3 cut(s) 346, 538, 960
BstV1I GCAGC 3 cut(s) 341, 519, 822
BstV2I GAAGAC 1 cut(s) 842
BstX2I RGATCY 1 cut(s) 927
BstYI RGATCY 1 cut(s) 927
BsuI GTATCC 1 cut(s) 136
BsuRI GGCC 2 cut(s) 110, 561
BtrI CACGTC 1 cut(s) 967
BtsCI GGATG 1 cut(s) 11
BveI ACCTGC 1 cut(s) 943
Cac8I GCNNGC 4 cut(s) 273, 559, 638, 689
CciI TCATGA 1 cut(s) 831
CfoI GCGC 4 cut(s) 146, 292, 1039, 1130
Cfr13I GGNCC 3 cut(s) 109, 244, 309
CseI GACGC 1 cut(s) 802
CsiI ACCWGGT 2 cut(s) 346, 538
Csp6I GTAC 2 cut(s) 219, 919
CviAII CATG 4 cut(s) 58, 366, 376, 832
CviQI GTAC 2 cut(s) 219, 919
DdeI CTNAG 4 cut(s) 37, 697, 976, 1155
DraIII CACNNNGTG 1 cut(s) 542
DrdI GACNNNNNNGTC 1 cut(s) 251
DseDI GACNNNNNNGTC 1 cut(s) 251
Eam1104I CTCTTC 1 cut(s) 262
EarI CTCTTC 1 cut(s) 262
Ecl136II GAGCTC 1 cut(s) 880
Eco130I CCWWGG 2 cut(s) 105, 562
Eco24I GRGCYC 3 cut(s) 585, 882, 1004
Eco47I GGWCC 2 cut(s) 244, 309
Eco53kI GAGCTC 1 cut(s) 880
Eco57I CTGAAG 1 cut(s) 1046
Eco88I CYCGRG 1 cut(s) 1003
EcoICRI GAGCTC 1 cut(s) 880
EcoNI CCTNNNNNAGG 1 cut(s) 345
EcoO109I RGGNCCY 1 cut(s) 109
EcoRII CCWGG 3 cut(s) 346, 538, 960
EcoT14I CCWWGG 2 cut(s) 105, 562
EcoT38I GRGCYC 3 cut(s) 585, 882, 1004
ErhI CCWWGG 2 cut(s) 105, 562
FaeI CATG 4 cut(s) 61, 369, 379, 835
FaiI YATR 7 cut(s) 59, 252, 367, 377, 658, 792, 833
FaqI GGGAC 2 cut(s) 173, 692
FatI CATG 4 cut(s) 57, 365, 375, 831
FbaI TGATCA 1 cut(s) 862
Fnu4HI GCNGC 3 cut(s) 355, 508, 811
FriOI GRGCYC 3 cut(s) 585, 882, 1004
Fsp4HI GCNGC 3 cut(s) 355, 508, 811
FspAI RTGCGCAY 1 cut(s) 1038
FspBI CTAG 4 cut(s) 185, 342, 1014, 1083
FspI TGCGCA 1 cut(s) 1038
GlaI GCGC 4 cut(s) 145, 291, 1038, 1129
GluI GCNGC 3 cut(s) 355, 508, 811
GsaI CCCAGC 1 cut(s) 909
GsuI CTGGAG 2 cut(s) 906, 943
HaeIII GGCC 2 cut(s) 110, 561
HapII CCGG 3 cut(s) 122, 141, 750
HgaI GACGC 1 cut(s) 802
HhaI GCGC 4 cut(s) 146, 292, 1039, 1130
Hin1II CATG 4 cut(s) 61, 369, 379, 835
Hin6I GCGC 4 cut(s) 144, 290, 1037, 1128
HinP1I GCGC 4 cut(s) 144, 290, 1037, 1128
HinfI GANTC 3 cut(s) 236, 753, 1092
HpaII CCGG 3 cut(s) 122, 141, 750
HphI GGTGA 1 cut(s) 967
Hpy166II GTNNAC 1 cut(s) 919
Hpy188I TCNGA 6 cut(s) 82, 241, 398, 700, 999, 1115
Hpy188III TCNNGA 8 cut(s) 402, 428, 523, 648, 727, 750, 832, 885
Hpy8I GTNNAC 1 cut(s) 919
HpyAV CCTTC 5 cut(s) 35, 128, 597, 677, 702
HpyCH4III ACNGT 4 cut(s) 498, 662, 829, 995
HpyCH4IV ACGT 4 cut(s) 92, 714, 719, 966
HpyCH4V TGCA 4 cut(s) 357, 507, 536, 952
HpyF3I CTNAG 4 cut(s) 37, 697, 976, 1155
HpySE526I ACGT 4 cut(s) 92, 714, 719, 966
Hsp92II CATG 4 cut(s) 61, 369, 379, 835
HspAI GCGC 4 cut(s) 144, 290, 1037, 1128
Kpn2I TCCGGA 1 cut(s) 749
Ksp22I TGATCA 1 cut(s) 862
LmnI GCTCC 2 cut(s) 588, 1103
Lsp1109I GCAGC 3 cut(s) 341, 519, 822
LweI GCATC 2 cut(s) 174, 1048
MabI ACCWGGT 2 cut(s) 346, 538
MaeI CTAG 4 cut(s) 185, 342, 1014, 1083
MaeII ACGT 4 cut(s) 92, 714, 719, 966
MaeIII GTNAC 4 cut(s) 407, 715, 898, 1007
MboII GAAGA 7 cut(s) 249, 663, 664, 847, 1049, 1052, 1071
MflI RGATCY 1 cut(s) 927
MhlI GDGCHC 5 cut(s) 38, 396, 585, 882, 1004
MluCI AATT 4 cut(s) 576, 593, 623, 1044
MmeI TCCRAC 1 cut(s) 1138
MroI TCCGGA 1 cut(s) 749
MseI TTAA 1 cut(s) 383
MslI CAYNNNNRTG 1 cut(s) 830
MspI CCGG 3 cut(s) 122, 141, 750
MspR9I CCNGG 3 cut(s) 348, 540, 962
MvaI CCWGG 3 cut(s) 348, 540, 962
NlaIII CATG 4 cut(s) 61, 369, 379, 835
NlaIV GGNNCC 1 cut(s) 584
NmeAIII GCCGAG 1 cut(s) 192
NmuCI GTSAC 1 cut(s) 898
NsbI TGCGCA 1 cut(s) 1038
NspI RCATGY 1 cut(s) 369
PagI TCATGA 1 cut(s) 831
PaqCI CACCTGC 1 cut(s) 943
PciI ACATGT 1 cut(s) 365
PfeI GAWTC 3 cut(s) 236, 753, 1092
PkrI GCNGC 3 cut(s) 356, 509, 812
PscI ACATGT 1 cut(s) 365
Psp124BI GAGCTC 1 cut(s) 882
Psp6I CCWGG 3 cut(s) 346, 538, 960
PspFI CCCAGC 1 cut(s) 905
PspGI CCWGG 3 cut(s) 346, 538, 960
PspN4I GGNNCC 1 cut(s) 584
PspPI GGNCC 3 cut(s) 109, 244, 309
PsuI RGATCY 1 cut(s) 927
RsaI GTAC 2 cut(s) 220, 920
RsaNI GTAC 2 cut(s) 219, 919
RseI CAYNNNNRTG 1 cut(s) 830
SacI GAGCTC 1 cut(s) 882
SaqAI TTAA 1 cut(s) 383
SatI GCNGC 3 cut(s) 355, 508, 811
Sau96I GGNCC 3 cut(s) 109, 244, 309
ScrFI CCNGG 3 cut(s) 348, 540, 962
SduI GDGCHC 5 cut(s) 38, 396, 585, 882, 1004
SexAI ACCWGGT 2 cut(s) 346, 538
SfaNI GCATC 2 cut(s) 174, 1048
SinI GGWCC 2 cut(s) 244, 309
SmiMI CAYNNNNRTG 1 cut(s) 830
SmlI CTYRAG 1 cut(s) 646
SmoI CTYRAG 1 cut(s) 646
Sse9I AATT 4 cut(s) 576, 593, 623, 1044
SsiI CCGC 3 cut(s) 216, 247, 282
SspI AATATT 2 cut(s) 704, 1024
SspMI CTAG 4 cut(s) 185, 342, 1014, 1083
SstI GAGCTC 1 cut(s) 882
StyD4I CCNGG 3 cut(s) 346, 538, 960
StyI CCWWGG 2 cut(s) 105, 562
TaaI ACNGT 4 cut(s) 498, 662, 829, 995
TaiI ACGT 4 cut(s) 95, 717, 722, 969
TaqI TCGA 6 cut(s) 207, 324, 414, 777, 842, 944
TaqII GACCGA 1 cut(s) 413
TasI AATT 4 cut(s) 576, 593, 623, 1044
TatI WGTACW 1 cut(s) 918
TfiI GAWTC 3 cut(s) 236, 753, 1092
Tru1I TTAA 1 cut(s) 383
Tru9I TTAA 1 cut(s) 383
TseFI GTSAC 1 cut(s) 898
TseI GCWGC 3 cut(s) 354, 507, 810
Tsp45I GTSAC 1 cut(s) 898
TspDTI ATGAA 3 cut(s) 55, 697, 848
TspGWI ACGGA 1 cut(s) 750
VpaK11BI GGWCC 2 cut(s) 244, 309
XagI CCTNNNNNAGG 1 cut(s) 345
XapI RAATTY 1 cut(s) 623
XceI RCATGY 1 cut(s) 369
XspI CTAG 4 cut(s) 185, 342, 1014, 1083
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.