Rh4DG210500

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000716
Physical Location & Seq
Reverse (-)
40572215 .. 40573183
969 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG210500.1

Sequence Viewer

Length: 969 bp
ATGTCATTAAACTCTGTGCTCGGATCGGGAGGTAACTTCGATCAGGTCGGTCAAGATGTTATCTCACTTCACTCCACAGATGGGTCTAATCCTACGAAGATCGTTTCTATTCCCAACTTACTGTTCGTTTGCAGCCAAACATTTCTCTTGACACAACTTGCGCCTGGTGTCAAGGGTATGGCTGGCCTTGGCAGGACTAAAATTGGGCTCCCTTCCCAATTTGCTTCCACTTTTAGCTTCAAAAGAAAATTCGCCATTTGCTTGCCCTCCTCAAGAAGATCATACGGTGTCGTATTCTTCGGGGACGGTCCTTATAATCTGCTTCCCGGTATTGATGTATCTAAGTCTCTTATCTACACCCCGTTGATCGTCAACCCTGTAACTACTGGGGCTAATTATGAAGAAGGCGAGCCTTCCTCAGAATATTTCATCAACGTAACGTCAATCAAGATCAACGGAAACGTTGTTTCCGGATTCAACACTTCCTTGCTGACAATCGACAAAGATGGGTATGGAGGCACAAAGATTAGCAGCGTCAATCCTTACACAGTCATGGAGACCTCGATCTACGACGCTTTCTTTGATCTCTTTACTAAAGAACTCTCTGGAGTGCCAAGAGTGACACCCGTAGAACCATTCGGAGTGTGCTTCAACTCAACCAATCTCGGTAGTACTCGGGTTGGCCCGCCGGTGCCTACCATTGATCTGGTGTTGCAGAGCGAGAGCGTGTACTGGAGGATCTTTAGGGCAAACTCGATGGTGCAGGTGAGCCAGGACGTGCTGTGCTTAGGGTTTGTGGATAACGGTCAGAGCCCGAGTAACCCTAGAACTAATATTGTGATTGGTGCGCATCAAATTGAGGATAATCTTCTTCAGTTTGATTTGGCTTCTTCTAGGCTGGGATTCAGCTCCTCTCTCTTGTTCCGACAGACCACTTGCGCTAACTTCAACTTCACTTCTGCTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

322

Amino Acids

34.67

Weight (kDa)

5.72

Isoelectric Point (pI)

36.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 15 - 102 1.8e-21 Xylanase inhibitor N-terminal
TAXi_C PF14541 141 - 303 4.6e-58 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 315
AarI CACCTGC 1 cut(s) 754
Acc16I TGCGCA 1 cut(s) 849
Acc36I ACCTGC 1 cut(s) 754
AccB1I GGYRCC 1 cut(s) 691
AccIII TCCGGA 1 cut(s) 470
AciI CCGC 1 cut(s) 686
AclI AACGTT 1 cut(s) 462
AclWI GGATC 2 cut(s) 31, 746
AcsI RAATTY 1 cut(s) 248
AcuI CTGAAG 1 cut(s) 857
AfaI GTAC 2 cut(s) 673, 731
AfiI CCNNNNNNNGG 1 cut(s) 81
AgsI TTSAA 4 cut(s) 241, 478, 652, 949
AjiI CACGTC 1 cut(s) 778
AjnI CCWGG 2 cut(s) 163, 771
AjuI GAANNNNNNNTTGG 2 cut(s) 107, 139
AluBI AGCT 2 cut(s) 237, 909
AluI AGCT 2 cut(s) 237, 909
Alw21I GWGCWC 1 cut(s) 21
Alw26I GTCTC 2 cut(s) 351, 551
AlwI GGATC 2 cut(s) 31, 746
Ama87I CYCGRG 2 cut(s) 675, 814
Aor13HI TCCGGA 1 cut(s) 470
AoxI GGCC 2 cut(s) 184, 682
ApeKI GCWGC 3 cut(s) 132, 531, 962
ApoI RAATTY 1 cut(s) 248
ArsI GACNNNNNNTTYG 2 cut(s) 563, 595
AspLEI GCGC 3 cut(s) 163, 850, 941
AspS9I GGNCC 2 cut(s) 308, 683
AsuC2I CCSGG 1 cut(s) 327
AsuHPI GGTGA 1 cut(s) 778
AvaI CYCGRG 2 cut(s) 675, 814
AvaII GGWCC 1 cut(s) 308
BanI GGYRCC 1 cut(s) 691
BanII GRGCYC 2 cut(s) 210, 815
Bbv12I GWGCWC 1 cut(s) 21
BbvI GCAGC 3 cut(s) 144, 543, 949
BccI CCATC 3 cut(s) 74, 500, 751
BciT130I CCWGG 2 cut(s) 165, 773
BcnI CCSGG 1 cut(s) 327
BcoDI GTCTC 2 cut(s) 351, 551
BfaI CTAG 2 cut(s) 825, 894
BfuAI ACCTGC 1 cut(s) 754
BisI GCNGC 3 cut(s) 133, 532, 963
BlsI GCNGC 3 cut(s) 134, 533, 964
BmcAI AGTACT 1 cut(s) 673
Bme1390I CCNGG 3 cut(s) 165, 327, 773
Bme18I GGWCC 1 cut(s) 308
BmeT110I CYCGRG 2 cut(s) 675, 814
BmgBI CACGTC 1 cut(s) 778
BmgT120I GGNCC 2 cut(s) 308, 683
BmiI GGNNCC 2 cut(s) 209, 693
BmrFI CCNGG 3 cut(s) 165, 327, 773
BmrI ACTGGG 1 cut(s) 396
BmsI GCATC 1 cut(s) 859
BmuI ACTGGG 1 cut(s) 396
BplI GAGNNNNNCTC 2 cut(s) 401, 433
BpmI CTGGAG 2 cut(s) 627, 754
Bpu10I CCTNAGC 1 cut(s) 787
BpuEI CTTGAG 1 cut(s) 256
BpuMI CCSGG 1 cut(s) 327
BsaI GGTCTC 1 cut(s) 551
BsaJI CCNNGG 1 cut(s) 187
BsaWI WCCGGW 1 cut(s) 470
Bsc4I CCNNNNNNNGG 1 cut(s) 81
Bse118I RCCGGY 1 cut(s) 688
Bse1I ACTGG 2 cut(s) 391, 737
BseAI TCCGGA 1 cut(s) 470
BseBI CCWGG 2 cut(s) 165, 773
BseDI CCNNGG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 81
BseMII CTCAG 1 cut(s) 432
BseNI ACTGG 2 cut(s) 391, 737
BseRI GAGGAG 2 cut(s) 259, 901
BseXI GCAGC 3 cut(s) 144, 543, 949
BseYI CCCAGC 1 cut(s) 898
BsgI GTGCAG 1 cut(s) 782
BshFI GGCC 2 cut(s) 186, 684
BshNI GGYRCC 1 cut(s) 691
BsiHKAI GWGCWC 1 cut(s) 21
BsiHKCI CYCGRG 2 cut(s) 675, 814
BsiSI CCGG 3 cut(s) 327, 471, 689
BslFI GGGAC 1 cut(s) 317
BslI CCNNNNNNNGG 1 cut(s) 81
BsmAI GTCTC 2 cut(s) 351, 551
BsmFI GGGAC 1 cut(s) 317
BsnI GGCC 2 cut(s) 186, 684
Bso31I GGTCTC 1 cut(s) 551
BsoBI CYCGRG 2 cut(s) 675, 814
Bsp1286I GDGCHC 3 cut(s) 21, 210, 815
Bsp13I TCCGGA 1 cut(s) 470
BspACI CCGC 1 cut(s) 686
BspANI GGCC 2 cut(s) 186, 684
BspCNI CTCAG 1 cut(s) 431
BspEI TCCGGA 1 cut(s) 470
BspLI GGNNCC 2 cut(s) 209, 693
BspMI ACCTGC 1 cut(s) 754
BspPI GGATC 2 cut(s) 31, 746
BspT107I GGYRCC 1 cut(s) 691
BspTNI GGTCTC 1 cut(s) 551
BsrFI RCCGGY 1 cut(s) 688
BsrI ACTGG 2 cut(s) 391, 737
BssAI RCCGGY 1 cut(s) 688
BssECI CCNNGG 1 cut(s) 187
BssT1I CCWWGG 1 cut(s) 187
Bst2UI CCWGG 2 cut(s) 165, 773
Bst4CI ACNGT 5 cut(s) 123, 287, 308, 550, 806
BstC8I GCNNGC 4 cut(s) 184, 263, 410, 686
BstDEI CTNAG 4 cut(s) 342, 418, 787, 966
BstHHI GCGC 3 cut(s) 163, 850, 941
BstMAI GTCTC 2 cut(s) 351, 551
BstNI CCWGG 2 cut(s) 165, 773
BstSCI CCNGG 3 cut(s) 163, 325, 771
BstV1I GCAGC 3 cut(s) 144, 543, 949
BstX2I RGATCY 1 cut(s) 738
BstXI CCANNNNNNTGG 1 cut(s) 706
BstYI RGATCY 1 cut(s) 738
BsuRI GGCC 2 cut(s) 186, 684
BtrI CACGTC 1 cut(s) 778
BveI ACCTGC 1 cut(s) 754
Cac8I GCNNGC 4 cut(s) 184, 263, 410, 686
CfoI GCGC 3 cut(s) 163, 850, 941
Cfr10I RCCGGY 1 cut(s) 688
Cfr13I GGNCC 2 cut(s) 308, 683
CseI GACGC 2 cut(s) 523, 581
Csp6I GTAC 2 cut(s) 672, 730
CviAII CATG 1 cut(s) 553
CviQI GTAC 2 cut(s) 672, 730
DdeI CTNAG 4 cut(s) 342, 418, 787, 966
Eco130I CCWWGG 1 cut(s) 187
Eco24I GRGCYC 2 cut(s) 210, 815
Eco31I GGTCTC 1 cut(s) 551
Eco47I GGWCC 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 857
Eco88I CYCGRG 2 cut(s) 675, 814
EcoRII CCWGG 2 cut(s) 163, 771
EcoT14I CCWWGG 1 cut(s) 187
EcoT38I GRGCYC 2 cut(s) 210, 815
ErhI CCWWGG 1 cut(s) 187
FaeI CATG 1 cut(s) 556
FaiI YATR 6 cut(s) 179, 283, 315, 399, 513, 554
FaqI GGGAC 1 cut(s) 317
FatI CATG 1 cut(s) 552
FauI CCCGC 1 cut(s) 693
Fnu4HI GCNGC 3 cut(s) 133, 532, 963
FriOI GRGCYC 2 cut(s) 210, 815
Fsp4HI GCNGC 3 cut(s) 133, 532, 963
FspAI RTGCGCAY 1 cut(s) 849
FspBI CTAG 2 cut(s) 825, 894
FspI TGCGCA 1 cut(s) 849
GlaI GCGC 3 cut(s) 162, 849, 940
GluI GCNGC 3 cut(s) 133, 532, 963
GsaI CCCAGC 1 cut(s) 902
GsuI CTGGAG 2 cut(s) 627, 754
HaeIII GGCC 2 cut(s) 186, 684
HapII CCGG 3 cut(s) 327, 471, 689
HgaI GACGC 2 cut(s) 523, 581
HhaI GCGC 3 cut(s) 163, 850, 941
Hin1II CATG 1 cut(s) 556
Hin6I GCGC 3 cut(s) 161, 848, 939
HinP1I GCGC 3 cut(s) 161, 848, 939
HincII GTYRAC 1 cut(s) 373
HindII GTYRAC 1 cut(s) 373
HinfI GANTC 2 cut(s) 474, 903
HpaII CCGG 3 cut(s) 327, 471, 689
HphI GGTGA 1 cut(s) 778
Hpy166II GTNNAC 2 cut(s) 373, 730
Hpy188I TCNGA 5 cut(s) 23, 421, 641, 810, 926
Hpy188III TCNNGA 7 cut(s) 27, 53, 148, 273, 448, 471, 606
Hpy8I GTNNAC 2 cut(s) 373, 730
Hpy99I CGWCG 1 cut(s) 575
HpyAV CCTTC 3 cut(s) 222, 398, 423
HpyCH4III ACNGT 5 cut(s) 123, 287, 308, 550, 806
HpyCH4IV ACGT 4 cut(s) 435, 440, 462, 777
HpyCH4V TGCA 3 cut(s) 132, 715, 763
HpyF3I CTNAG 4 cut(s) 342, 418, 787, 966
HpySE526I ACGT 4 cut(s) 435, 440, 462, 777
Hsp92II CATG 1 cut(s) 556
HspAI GCGC 3 cut(s) 161, 848, 939
Kpn2I TCCGGA 1 cut(s) 470
LmnI GCTCC 2 cut(s) 213, 914
Lsp1109I GCAGC 3 cut(s) 144, 543, 949
LweI GCATC 1 cut(s) 859
MaeI CTAG 2 cut(s) 825, 894
MaeII ACGT 4 cut(s) 435, 440, 462, 777
MaeIII GTNAC 5 cut(s) 32, 379, 436, 619, 818
MboII GAAGA 7 cut(s) 109, 288, 289, 413, 860, 863, 882
MflI RGATCY 1 cut(s) 738
MhlI GDGCHC 3 cut(s) 21, 210, 815
MluCI AATT 5 cut(s) 201, 218, 248, 394, 855
MmeI TCCRAC 1 cut(s) 949
MnlI CCTC 9 cut(s) 23, 277, 280, 427, 509, 571, 729, 853, 922
MroI TCCGGA 1 cut(s) 470
MseI TTAA 1 cut(s) 8
MslI CAYNNNNRTG 1 cut(s) 551
MspI CCGG 3 cut(s) 327, 471, 689
MspR9I CCNGG 3 cut(s) 165, 327, 773
MvaI CCWGG 2 cut(s) 165, 773
NciI CCSGG 1 cut(s) 327
NlaIII CATG 1 cut(s) 556
NlaIV GGNNCC 2 cut(s) 209, 693
NmuCI GTSAC 1 cut(s) 619
NsbI TGCGCA 1 cut(s) 849
PaqCI CACCTGC 1 cut(s) 754
PfeI GAWTC 2 cut(s) 474, 903
PkrI GCNGC 3 cut(s) 134, 533, 964
PsiI TTATAA 1 cut(s) 315
Psp1406I AACGTT 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 163, 771
PspFI CCCAGC 1 cut(s) 898
PspGI CCWGG 2 cut(s) 163, 771
PspN4I GGNNCC 2 cut(s) 209, 693
PspPI GGNCC 2 cut(s) 308, 683
PsuI RGATCY 1 cut(s) 738
RsaI GTAC 2 cut(s) 673, 731
RsaNI GTAC 2 cut(s) 672, 730
RseI CAYNNNNRTG 1 cut(s) 551
SaqAI TTAA 1 cut(s) 8
SatI GCNGC 3 cut(s) 133, 532, 963
Sau96I GGNCC 2 cut(s) 308, 683
ScaI AGTACT 1 cut(s) 673
ScrFI CCNGG 3 cut(s) 165, 327, 773
SduI GDGCHC 3 cut(s) 21, 210, 815
SfaNI GCATC 1 cut(s) 859
SgrAI CRCCGGYG 1 cut(s) 688
SinI GGWCC 1 cut(s) 308
SmiMI CAYNNNNRTG 1 cut(s) 551
SmlI CTYRAG 1 cut(s) 271
SmoI CTYRAG 1 cut(s) 271
Sse9I AATT 5 cut(s) 201, 218, 248, 394, 855
SsiI CCGC 1 cut(s) 686
SspI AATATT 2 cut(s) 425, 835
SspMI CTAG 2 cut(s) 825, 894
StyD4I CCNGG 3 cut(s) 163, 325, 771
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 5 cut(s) 123, 287, 308, 550, 806
TaiI ACGT 4 cut(s) 438, 443, 465, 780
TaqI TCGA 4 cut(s) 39, 498, 563, 755
TaqII GACCGA 1 cut(s) 38
TasI AATT 5 cut(s) 201, 218, 248, 394, 855
TatI WGTACW 2 cut(s) 671, 729
TfiI GAWTC 2 cut(s) 474, 903
Tru1I TTAA 1 cut(s) 8
Tru9I TTAA 1 cut(s) 8
TseFI GTSAC 1 cut(s) 619
TseI GCWGC 3 cut(s) 132, 531, 962
Tsp45I GTSAC 1 cut(s) 619
TspDTI ATGAA 2 cut(s) 414, 418
TspGWI ACGGA 1 cut(s) 471
VpaK11BI GGWCC 1 cut(s) 308
XapI RAATTY 1 cut(s) 248
XspI CTAG 2 cut(s) 825, 894
ZrmI AGTACT 1 cut(s) 673
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.