MD16G1185300.v1.1

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0000716
Physical Location & Seq
Forward (+)
15950143 .. 15950778
636 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1185300.v1.1.491

Sequence Viewer

Length: 636 bp
ATGAGCCAATCACAACACAATTCACTTATTTTCACTCCATTGATCATCAACCTTGTCAACACAGCCGGTGCTTATTTTCAAGGCGAGCCTTCGGTGGAGTACTTCATCAATGTGAAGTCAATTAAGGTCAATGGAAAGGTTGTTGCTTTGAATACTTCATTGATGGCCATTGACAATGAAGGGTATGGGGGCATGAAGATTAGCACGGTGAATCTGTACATGGTTTTGGAGACCTCAATCTACAACGTCGTTGTGAATGCATTTGTGAAAGAAGTTGCCAATAAAATCCCAAAAGTGAAAGCAGTAGCGCCTTTCAGAGCATGCTTCAGTTCGAAGAGCATTGGTGTTACGAGGGTTGGGCCTTCTGTGCCTTCAATTGATCTTGTGTTGCAGAGCGAGAGTGTATATTGGACAATGTTCAGAGCAAATTCAATGGTGTATGTGAGCAATGATGTCCTGTGTTTAGGGTTTATGGATGGAGGTGAAAAGCCAAGGACTTCTATTGTGATTGGAGGGCACCAACTGGAGGACAATCTTCTGCAGTTTGATCTGGCTACTTCTAGGCTTGGTTTTAGCTCCTCACTTTTGTTCAGTCGAACAACTTGTGGGAACTTCAACTTCACTTCTAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

212

Amino Acids

22.99

Weight (kDa)

8.41

Isoelectric Point (pI)

32.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 33 - 192 9.8e-61 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 516
AcoI YGGCCR 1 cut(s) 165
AcsI RAATTY 1 cut(s) 427
AcuI CTGAAG 1 cut(s) 310
AfaI GTAC 2 cut(s) 101, 218
AfiI CCNNNNNNNGG 1 cut(s) 526
AgsI TTSAA 5 cut(s) 80, 151, 375, 432, 616
AluBI AGCT 1 cut(s) 576
AluI AGCT 1 cut(s) 576
Alw26I GTCTC 1 cut(s) 224
AoxI GGCC 2 cut(s) 165, 359
ApoI RAATTY 1 cut(s) 427
AspLEI GCGC 1 cut(s) 310
AspS9I GGNCC 1 cut(s) 359
AsuHPI GGTGA 2 cut(s) 220, 494
AsuII TTCGAA 1 cut(s) 332
BaeGI GKGCMC 1 cut(s) 519
BalI TGGCCA 1 cut(s) 167
BanI GGYRCC 1 cut(s) 516
BccI CCATC 2 cut(s) 157, 470
BclI TGATCA 1 cut(s) 42
BcoDI GTCTC 1 cut(s) 224
BfaI CTAG 1 cut(s) 561
BfmI CTRYAG 1 cut(s) 539
BfoI RGCGCY 1 cut(s) 311
BmcAI AGTACT 1 cut(s) 101
BmgT120I GGNCC 1 cut(s) 359
BmiI GGNNCC 1 cut(s) 518
BpmI CTGGAG 1 cut(s) 545
Bpu14I TTCGAA 1 cut(s) 332
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 491
Bsc4I CCNNNNNNNGG 1 cut(s) 526
Bse118I RCCGGY 1 cut(s) 65
Bse1I ACTGG 1 cut(s) 528
Bse3DI GCAATG 1 cut(s) 454
BseDI CCNNGG 1 cut(s) 491
BseGI GGATG 1 cut(s) 481
BseLI CCNNNNNNNGG 1 cut(s) 526
BseMI GCAATG 1 cut(s) 454
BseNI ACTGG 1 cut(s) 528
BseRI GAGGAG 1 cut(s) 568
BseSI GKGCMC 1 cut(s) 519
BshFI GGCC 2 cut(s) 167, 361
BshNI GGYRCC 1 cut(s) 516
BsiSI CCGG 1 cut(s) 66
BslI CCNNNNNNNGG 1 cut(s) 526
BsmAI GTCTC 1 cut(s) 224
BsmI GAATGC 1 cut(s) 262
BsnI GGCC 2 cut(s) 167, 361
Bso31I GGTCTC 1 cut(s) 224
Bsp119I TTCGAA 1 cut(s) 332
Bsp1286I GDGCHC 1 cut(s) 519
Bsp1407I TGTACA 1 cut(s) 216
Bsp143I GATC 3 cut(s) 42, 379, 547
BspANI GGCC 2 cut(s) 167, 361
BspLI GGNNCC 1 cut(s) 518
BspMAI CTGCAG 1 cut(s) 543
BspQI GCTCTTC 1 cut(s) 329
BspT104I TTCGAA 1 cut(s) 332
BspT107I GGYRCC 1 cut(s) 516
BspTNI GGTCTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 454
BsrFI RCCGGY 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 216
BsrI ACTGG 1 cut(s) 528
BssAI RCCGGY 1 cut(s) 65
BssECI CCNNGG 1 cut(s) 491
BssMI GATC 3 cut(s) 42, 379, 547
BssT1I CCWWGG 1 cut(s) 491
Bst4CI ACNGT 1 cut(s) 208
Bst6I CTCTTC 1 cut(s) 329
BstAUI TGTACA 1 cut(s) 216
BstBI TTCGAA 1 cut(s) 332
BstC8I GCNNGC 2 cut(s) 86, 322
BstF5I GGATG 1 cut(s) 481
BstH2I RGCGCY 1 cut(s) 311
BstHHI GCGC 1 cut(s) 310
BstKTI GATC 3 cut(s) 45, 382, 550
BstMAI GTCTC 1 cut(s) 224
BstMBI GATC 3 cut(s) 42, 379, 547
BstMWI GCNNNNNNNGC 1 cut(s) 367
BstNSI RCATGY 1 cut(s) 324
BstSFI CTRYAG 1 cut(s) 539
BstSLI GKGCMC 1 cut(s) 519
BsuRI GGCC 2 cut(s) 167, 361
BtsCI GGATG 1 cut(s) 481
Cac8I GCNNGC 2 cut(s) 86, 322
CfoI GCGC 1 cut(s) 310
Cfr10I RCCGGY 1 cut(s) 65
Cfr13I GGNCC 1 cut(s) 359
Csp6I GTAC 2 cut(s) 100, 217
CviAII CATG 3 cut(s) 193, 220, 321
CviJI RGCY 9 cut(s) 6, 65, 88, 167, 361, 490, 554, 565, 576
CviKI_1 RGCY 9 cut(s) 6, 65, 88, 167, 361, 490, 554, 565, 576
CviQI GTAC 2 cut(s) 100, 217
DpnI GATC 3 cut(s) 44, 381, 549
DpnII GATC 3 cut(s) 42, 379, 547
EaeI YGGCCR 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 329
EarI CTCTTC 1 cut(s) 329
Eco130I CCWWGG 1 cut(s) 491
Eco31I GGTCTC 1 cut(s) 224
Eco57I CTGAAG 1 cut(s) 310
EcoT14I CCWWGG 1 cut(s) 491
EcoT22I ATGCAT 1 cut(s) 262
ErhI CCWWGG 1 cut(s) 491
FaeI CATG 3 cut(s) 196, 223, 324
FaiI YATR 7 cut(s) 186, 194, 221, 322, 406, 441, 473
FatI CATG 3 cut(s) 192, 219, 320
FbaI TGATCA 1 cut(s) 42
FokI GGATG 1 cut(s) 488
FspBI CTAG 1 cut(s) 561
GlaI GCGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 545
HaeII RGCGCY 1 cut(s) 311
HaeIII GGCC 2 cut(s) 167, 361
HapII CCGG 1 cut(s) 66
HhaI GCGC 1 cut(s) 310
Hin1II CATG 3 cut(s) 196, 223, 324
Hin6I GCGC 1 cut(s) 308
HinP1I GCGC 1 cut(s) 308
HincII GTYRAC 1 cut(s) 58
HindII GTYRAC 1 cut(s) 58
HinfI GANTC 1 cut(s) 211
HpaII CCGG 1 cut(s) 66
HphI GGTGA 2 cut(s) 220, 494
Hpy166II GTNNAC 1 cut(s) 58
Hpy188I TCNGA 2 cut(s) 317, 422
Hpy8I GTNNAC 1 cut(s) 58
Hpy99I CGWCG 1 cut(s) 251
HpyAV CCTTC 4 cut(s) 99, 173, 372, 381
HpyCH4III ACNGT 1 cut(s) 208
HpyCH4IV ACGT 1 cut(s) 246
HpyCH4V TGCA 3 cut(s) 260, 391, 541
HpyF10VI GCNNNNNNNGC 1 cut(s) 367
HpySE526I ACGT 1 cut(s) 246
Hsp92II CATG 3 cut(s) 196, 223, 324
HspAI GCGC 1 cut(s) 308
Ksp22I TGATCA 1 cut(s) 42
Kzo9I GATC 3 cut(s) 42, 379, 547
LguI GCTCTTC 1 cut(s) 329
LmnI GCTCC 1 cut(s) 581
LpnPI CCDG 4 cut(s) 79, 470, 509, 536
MaeI CTAG 1 cut(s) 561
MaeII ACGT 1 cut(s) 246
MaeIII GTNAC 1 cut(s) 346
MalI GATC 3 cut(s) 44, 381, 549
MboI GATC 3 cut(s) 42, 379, 547
MboII GAAGA 3 cut(s) 208, 346, 527
MfeI CAATTG 1 cut(s) 375
MhlI GDGCHC 1 cut(s) 519
MlsI TGGCCA 1 cut(s) 167
MluCI AATT 4 cut(s) 19, 120, 375, 427
MluNI TGGCCA 1 cut(s) 167
MnlI CCTC 6 cut(s) 244, 345, 473, 506, 520, 589
Mox20I TGGCCA 1 cut(s) 167
Mph1103I ATGCAT 1 cut(s) 262
MscI TGGCCA 1 cut(s) 167
MseI TTAA 2 cut(s) 123, 634
MslI CAYNNNNRTG 1 cut(s) 110
Msp20I TGGCCA 1 cut(s) 167
MspI CCGG 1 cut(s) 66
MunI CAATTG 1 cut(s) 375
Mva1269I GAATGC 1 cut(s) 262
MwoI GCNNNNNNNGC 1 cut(s) 367
NdeII GATC 3 cut(s) 42, 379, 547
NlaIII CATG 3 cut(s) 196, 223, 324
NlaIV GGNNCC 1 cut(s) 518
NsiI ATGCAT 1 cut(s) 262
NspI RCATGY 1 cut(s) 324
NspV TTCGAA 1 cut(s) 332
PaeI GCATGC 1 cut(s) 324
PciSI GCTCTTC 1 cut(s) 329
PctI GAATGC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 211
PspN4I GGNNCC 1 cut(s) 518
PspPI GGNCC 1 cut(s) 359
PstI CTGCAG 1 cut(s) 543
RsaI GTAC 2 cut(s) 101, 218
RsaNI GTAC 2 cut(s) 100, 217
RseI CAYNNNNRTG 1 cut(s) 110
SapI GCTCTTC 1 cut(s) 329
SaqAI TTAA 2 cut(s) 123, 634
Sau3AI GATC 3 cut(s) 42, 379, 547
Sau96I GGNCC 1 cut(s) 359
ScaI AGTACT 1 cut(s) 101
SduI GDGCHC 1 cut(s) 519
SetI ASST 7 cut(s) 54, 129, 141, 236, 249, 484, 578
SfcI CTRYAG 1 cut(s) 539
SfuI TTCGAA 1 cut(s) 332
SmiMI CAYNNNNRTG 1 cut(s) 110
SphI GCATGC 1 cut(s) 324
Sse9I AATT 4 cut(s) 19, 120, 375, 427
SspMI CTAG 1 cut(s) 561
StyI CCWWGG 1 cut(s) 491
TaaI ACNGT 1 cut(s) 208
TaiI ACGT 1 cut(s) 249
TaqI TCGA 2 cut(s) 332, 595
TasI AATT 4 cut(s) 19, 120, 375, 427
TatI WGTACW 2 cut(s) 99, 216
TfiI GAWTC 1 cut(s) 211
Tru1I TTAA 2 cut(s) 123, 634
Tru9I TTAA 2 cut(s) 123, 634
TspDTI ATGAA 4 cut(s) 94, 147, 192, 209
XapI RAATTY 1 cut(s) 427
XceI RCATGY 1 cut(s) 324
XspI CTAG 1 cut(s) 561
ZrmI AGTACT 1 cut(s) 101
Zsp2I ATGCAT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.