Rroxscaffold_5G00361320

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000716
Physical Location & Seq
Reverse (-)
41984094 .. 41985770
1677 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361320.1

Sequence Viewer

Length: 1050 bp
ATGGCTTCCTCATCATTTCTTTGCCTTACTCTCCTTTCCTCACTCGTCTTCTTCATCGCCGCTCCATCACTAGCCAAAACATCTTTCCGGCCCAAAGCCCTCGTTCTTCCGGTAGCCAAACACTCTCCCACTCACCAATACCTCACCAGCATCAAGCAAAGAACCCCTCTTGTTCCTGTTAGACTAACCCTAGACCTCGGTGGTCAGTTCCTTTGGGTAGACTGTCAACAAGGCTATGTCTCATCTACGTACAAACCTGCCCGTTGCAACTCAGCTCAATGCTCACTCGCAAACTCTAAGGCGTGTACAACAGAGTGCAATTCTTCCCCCAGGCCAGCCTGCAACAACAACACATGTAGTGTCCTCCCAGACAACTCCGTGATCCCCACGTCCGACAACGGCGGGGAGGTAGGTCAAGACGTCGTCTCCCTCCATTCCACAGATGGGTCTAACCCTACCACACTAGTTTCTGTTCCCAACTTCCTCTTCGCTTGTGCTGAAACTTTTCTATTGGACCGCCTTGCAAGTGGTGTCAAAGGTATGGCTGGTCTTGGTAGAGCTAAAATTGGACTTCCTTCTCTATTTGCTTCCGCTTTTAGCTTCAAAAGAAAATTCGCCATTTGCTTGCCCTCCTCAACAAAATCATACGGTGCCGTTTTCTTCGGAGATGGGCCTTACAACCTTCTTCCTGGGATTGACGTCTCTCAATCTTTTATTTACACACCATTGCTCCTCAACCCTGTAAGCACTGCCAGTGCCTATTTTCAAGGCGATGCTTCTACGGAATACTTCATCAATGTAACGTCCATCAAGATCAACGACAAGGTCGTTTCGTCATTTAACAGTTCCTTGCTAACCATTGACGAATATGGTTATGGCCAAAGTCACATGAAACGCGGAACGTTGCGGTACGGATACGCAATACGGGTACGTGGTGCTACGTCGAGGATCGGAGGCCGAGACGAGACGGCACGAGTGTTAGCCAAGCGCGGCACCAAACCGGTCCTCCCCGCTCGGAGTCTCAAAGCCGCCGAGGACGCCAAGGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

349

Amino Acids

37.3

Weight (kDa)

9.39

Isoelectric Point (pI)

39.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 47 - 223 1.3e-45 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 423, 702
Acc36I ACCTGC 1 cut(s) 265
AccB1I GGYRCC 2 cut(s) 650, 992
AccBSI CCGCTC 2 cut(s) 62, 1013
AccI GTMKAC 1 cut(s) 219
AccII CGCG 2 cut(s) 897, 990
AciI CCGC 9 cut(s) 60, 402, 517, 591, 897, 907, 990, 1011, 1029
AclI AACGTT 1 cut(s) 902
AclWI GGATC 2 cut(s) 376, 956
AcoI YGGCCR 1 cut(s) 877
AcsI RAATTY 1 cut(s) 611
AcyI GRCGYC 3 cut(s) 420, 699, 1038
AfaI GTAC 4 cut(s) 251, 307, 911, 930
AfiI CCNNNNNNNGG 1 cut(s) 444
AflIII ACRYGT 1 cut(s) 353
AgeI ACCGGT 1 cut(s) 1000
AgsI TTSAA 2 cut(s) 604, 767
AhlI ACTAGT 1 cut(s) 463
AjiI CACGTC 1 cut(s) 390
AjnI CCWGG 2 cut(s) 329, 688
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 470, 502
AluBI AGCT 3 cut(s) 275, 560, 600
AluI AGCT 3 cut(s) 275, 560, 600
Alw26I GTCTC 6 cut(s) 244, 430, 706, 954, 959, 1025
AlwI GGATC 2 cut(s) 376, 956
AoxI GGCC 5 cut(s) 89, 332, 671, 877, 955
ApoI RAATTY 1 cut(s) 611
AsiGI ACCGGT 1 cut(s) 1000
Asp700I GAANNNNTTC 1 cut(s) 504
AspLEI GCGC 1 cut(s) 990
AspS9I GGNCC 4 cut(s) 90, 514, 671, 1003
AsuHPI GGTGA 2 cut(s) 125, 136
AvaII GGWCC 2 cut(s) 514, 1003
BalI TGGCCA 1 cut(s) 879
BanI GGYRCC 2 cut(s) 650, 992
BauI CACGAG 1 cut(s) 972
BbsI GAAGAC 1 cut(s) 40
BccI CCATC 4 cut(s) 73, 437, 662, 815
BceAI ACGGC 3 cut(s) 415, 638, 984
BciT130I CCWGG 2 cut(s) 331, 690
BciVI GTATCC 1 cut(s) 908
BcoDI GTCTC 6 cut(s) 244, 430, 706, 954, 959, 1025
BcuI ACTAGT 1 cut(s) 463
BfaI CTAG 3 cut(s) 71, 191, 464
BfuAI ACCTGC 1 cut(s) 265
BfuI GTATCC 1 cut(s) 908
BisI GCNGC 3 cut(s) 60, 991, 1029
BlsI GCNGC 3 cut(s) 61, 992, 1030
Bme1390I CCNGG 2 cut(s) 331, 690
Bme18I GGWCC 2 cut(s) 514, 1003
BmgBI CACGTC 1 cut(s) 390
BmgT120I GGNCC 4 cut(s) 90, 514, 671, 1003
BmiI GGNNCC 2 cut(s) 652, 994
BmrFI CCNGG 2 cut(s) 331, 690
BmsI GCATC 2 cut(s) 159, 763
BpiI GAAGAC 1 cut(s) 40
BsaAI YACGTR 2 cut(s) 249, 932
BsaHI GRCGYC 3 cut(s) 420, 699, 1038
BsaJI CCNNGG 5 cut(s) 196, 329, 689, 1032, 1041
BsaWI WCCGGW 2 cut(s) 109, 1000
BsaXI ACNNNNNCTCC 6 cut(s) 410, 440, 714, 744, 990, 1020
Bsc4I CCNNNNNNNGG 1 cut(s) 444
Bse118I RCCGGY 1 cut(s) 1000
Bse1I ACTGG 1 cut(s) 753
Bse3DI GCAATG 1 cut(s) 725
BseBI CCWGG 2 cut(s) 331, 690
BseDI CCNNGG 5 cut(s) 196, 329, 689, 1032, 1041
BseLI CCNNNNNNNGG 1 cut(s) 444
BseMI GCAATG 1 cut(s) 725
BseMII CTCAG 1 cut(s) 285
BseNI ACTGG 1 cut(s) 753
BseRI GAGGAG 2 cut(s) 622, 722
Bsh1236I CGCG 2 cut(s) 897, 990
BshFI GGCC 5 cut(s) 91, 334, 673, 879, 957
BshNI GGYRCC 2 cut(s) 650, 992
BshTI ACCGGT 1 cut(s) 1000
BsiSI CCGG 3 cut(s) 88, 110, 1001
BslI CCNNNNNNNGG 1 cut(s) 444
BsmAI GTCTC 6 cut(s) 244, 430, 706, 954, 959, 1025
BsmBI CGTCTC 4 cut(s) 430, 706, 954, 959
BsnI GGCC 5 cut(s) 91, 334, 673, 879, 957
Bsp1407I TGTACA 1 cut(s) 305
Bsp143I GATC 3 cut(s) 381, 813, 948
BspACI CCGC 9 cut(s) 60, 402, 517, 591, 897, 907, 990, 1011, 1029
BspANI GGCC 5 cut(s) 91, 334, 673, 879, 957
BspCNI CTCAG 1 cut(s) 284
BspFNI CGCG 2 cut(s) 897, 990
BspLI GGNNCC 2 cut(s) 652, 994
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 2 cut(s) 376, 956
BspT107I GGYRCC 2 cut(s) 650, 992
BsrBI CCGCTC 2 cut(s) 62, 1013
BsrDI GCAATG 1 cut(s) 725
BsrFI RCCGGY 1 cut(s) 1000
BsrGI TGTACA 1 cut(s) 305
BsrI ACTGG 1 cut(s) 753
BssAI RCCGGY 1 cut(s) 1000
BssECI CCNNGG 5 cut(s) 196, 329, 689, 1032, 1041
BssMI GATC 3 cut(s) 381, 813, 948
BssNI GRCGYC 3 cut(s) 420, 699, 1038
BssSI CACGAG 1 cut(s) 972
BssT1I CCWWGG 1 cut(s) 1041
Bst2BI CACGAG 1 cut(s) 972
Bst2UI CCWGG 2 cut(s) 331, 690
Bst4CI ACNGT 3 cut(s) 224, 650, 845
Bst6I CTCTTC 1 cut(s) 491
BstACI GRCGYC 3 cut(s) 420, 699, 1038
BstAUI TGTACA 1 cut(s) 305
BstBAI YACGTR 2 cut(s) 249, 932
BstC8I GCNNGC 3 cut(s) 336, 340, 626
BstDEI CTNAG 2 cut(s) 271, 297
BstFNI CGCG 2 cut(s) 897, 990
BstHHI GCGC 1 cut(s) 990
BstKTI GATC 3 cut(s) 384, 816, 951
BstMAI GTCTC 6 cut(s) 244, 430, 706, 954, 959, 1025
BstMBI GATC 3 cut(s) 381, 813, 948
BstMWI GCNNNNNNNGC 1 cut(s) 1037
BstNI CCWGG 2 cut(s) 331, 690
BstNSI RCATGY 1 cut(s) 357
BstSCI CCNGG 2 cut(s) 329, 688
BstSNI TACGTA 1 cut(s) 249
BstUI CGCG 2 cut(s) 897, 990
BstV2I GAAGAC 1 cut(s) 40
BsuI GTATCC 1 cut(s) 908
BsuRI GGCC 5 cut(s) 91, 334, 673, 879, 957
BtgZI GCGATG 2 cut(s) 40, 786
BtrI CACGTC 1 cut(s) 390
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 2 cut(s) 747, 760
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 336, 340, 626
CfoI GCGC 1 cut(s) 990
Cfr10I RCCGGY 1 cut(s) 1000
Cfr13I GGNCC 4 cut(s) 90, 514, 671, 1003
Csp6I GTAC 4 cut(s) 250, 306, 910, 929
CspAI ACCGGT 1 cut(s) 1000
CviAII CATG 2 cut(s) 354, 889
CviQI GTAC 4 cut(s) 250, 306, 910, 929
DdeI CTNAG 2 cut(s) 271, 297
DpnI GATC 3 cut(s) 383, 815, 950
DpnII GATC 3 cut(s) 381, 813, 948
EaeI YGGCCR 1 cut(s) 877
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco105I TACGTA 1 cut(s) 249
Eco130I CCWWGG 1 cut(s) 1041
Eco47I GGWCC 2 cut(s) 514, 1003
EcoRII CCWGG 2 cut(s) 329, 688
EcoT14I CCWWGG 1 cut(s) 1041
ErhI CCWWGG 1 cut(s) 1041
Esp3I CGTCTC 4 cut(s) 430, 706, 954, 959
FaeI CATG 2 cut(s) 357, 892
FaiI YATR 7 cut(s) 237, 355, 542, 646, 870, 876, 890
FatI CATG 2 cut(s) 353, 888
FauI CCCGC 2 cut(s) 395, 1018
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 3 cut(s) 60, 991, 1029
Fsp4HI GCNGC 3 cut(s) 60, 991, 1029
FspBI CTAG 3 cut(s) 71, 191, 464
GlaI GCGC 1 cut(s) 989
GluI GCNGC 3 cut(s) 60, 991, 1029
HaeIII GGCC 5 cut(s) 91, 334, 673, 879, 957
HapII CCGG 3 cut(s) 88, 110, 1001
HhaI GCGC 1 cut(s) 990
Hin1I GRCGYC 3 cut(s) 420, 699, 1038
Hin1II CATG 2 cut(s) 357, 892
Hin6I GCGC 1 cut(s) 988
HinP1I GCGC 1 cut(s) 988
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HinfI GANTC 1 cut(s) 1018
HpaII CCGG 3 cut(s) 88, 110, 1001
HphI GGTGA 2 cut(s) 125, 136
Hpy166II GTNNAC 3 cut(s) 220, 227, 306
Hpy188I TCNGA 4 cut(s) 394, 665, 953, 1017
Hpy188III TCNNGA 2 cut(s) 416, 811
Hpy8I GTNNAC 3 cut(s) 220, 227, 306
Hpy99I CGWCG 2 cut(s) 425, 946
HpyAV CCTTC 2 cut(s) 585, 692
HpyCH4III ACNGT 3 cut(s) 224, 650, 845
HpyCH4IV ACGT 8 cut(s) 248, 389, 420, 699, 803, 902, 931, 941
HpyCH4V TGCA 4 cut(s) 267, 318, 342, 524
HpyF10VI GCNNNNNNNGC 1 cut(s) 1037
HpyF3I CTNAG 2 cut(s) 271, 297
HpySE526I ACGT 8 cut(s) 248, 389, 420, 699, 803, 902, 931, 941
Hsp92I GRCGYC 3 cut(s) 420, 699, 1038
Hsp92II CATG 2 cut(s) 357, 892
HspAI GCGC 1 cut(s) 988
Kzo9I GATC 3 cut(s) 381, 813, 948
LmnI GCTCC 2 cut(s) 67, 735
LweI GCATC 2 cut(s) 159, 763
MaeI CTAG 3 cut(s) 71, 191, 464
MaeII ACGT 8 cut(s) 248, 389, 420, 699, 803, 902, 931, 941
MaeIII GTNAC 2 cut(s) 799, 884
MalI GATC 3 cut(s) 383, 815, 950
MbiI CCGCTC 2 cut(s) 62, 1013
MboI GATC 3 cut(s) 381, 813, 948
MboII GAAGA 7 cut(s) 40, 43, 98, 315, 478, 652, 677
MlsI TGGCCA 1 cut(s) 879
MluCI AATT 3 cut(s) 319, 564, 611
MluNI TGGCCA 1 cut(s) 879
MlyI GAGTC 1 cut(s) 1027
MmeI TCCRAC 1 cut(s) 417
Mox20I TGGCCA 1 cut(s) 879
MroXI GAANNNNTTC 1 cut(s) 504
MscI TGGCCA 1 cut(s) 879
MseI TTAA 1 cut(s) 840
Msp20I TGGCCA 1 cut(s) 879
MspI CCGG 3 cut(s) 88, 110, 1001
MspR9I CCNGG 2 cut(s) 331, 690
MvaI CCWGG 2 cut(s) 331, 690
MvnI CGCG 2 cut(s) 897, 990
MwoI GCNNNNNNNGC 1 cut(s) 1037
NdeII GATC 3 cut(s) 381, 813, 948
NlaIII CATG 2 cut(s) 357, 892
NlaIV GGNNCC 2 cut(s) 652, 994
NmeAIII GCCGAG 1 cut(s) 983
NmuCI GTSAC 1 cut(s) 884
NspI RCATGY 1 cut(s) 357
PciI ACATGT 1 cut(s) 353
PcsI WCGNNNNNNNCGW 1 cut(s) 825
PdmI GAANNNNTTC 1 cut(s) 504
PflFI GACNNNGTC 2 cut(s) 422, 824
PinAI ACCGGT 1 cut(s) 1000
PkrI GCNGC 3 cut(s) 61, 992, 1030
PleI GAGTC 1 cut(s) 1026
PpsI GAGTC 1 cut(s) 1026
Ppu21I YACGTR 2 cut(s) 249, 932
PscI ACATGT 1 cut(s) 353
Psp1406I AACGTT 1 cut(s) 902
Psp6I CCWGG 2 cut(s) 329, 688
PspGI CCWGG 2 cut(s) 329, 688
PspN4I GGNNCC 2 cut(s) 652, 994
PspPI GGNCC 4 cut(s) 90, 514, 671, 1003
PsyI GACNNNGTC 2 cut(s) 422, 824
RsaI GTAC 4 cut(s) 251, 307, 911, 930
RsaNI GTAC 4 cut(s) 250, 306, 910, 929
SaqAI TTAA 1 cut(s) 840
SatI GCNGC 3 cut(s) 60, 991, 1029
Sau3AI GATC 3 cut(s) 381, 813, 948
Sau96I GGNCC 4 cut(s) 90, 514, 671, 1003
SchI GAGTC 1 cut(s) 1027
ScrFI CCNGG 2 cut(s) 331, 690
SfaNI GCATC 2 cut(s) 159, 763
SinI GGWCC 2 cut(s) 514, 1003
SnaBI TACGTA 1 cut(s) 249
SpeI ACTAGT 1 cut(s) 463
Sse9I AATT 3 cut(s) 319, 564, 611
SsiI CCGC 9 cut(s) 60, 402, 517, 591, 897, 907, 990, 1011, 1029
SspMI CTAG 3 cut(s) 71, 191, 464
StyD4I CCNGG 2 cut(s) 329, 688
StyI CCWWGG 1 cut(s) 1041
TaaI ACNGT 3 cut(s) 224, 650, 845
TaiI ACGT 8 cut(s) 251, 392, 423, 702, 806, 905, 934, 944
TaqI TCGA 1 cut(s) 944
TasI AATT 3 cut(s) 319, 564, 611
TatI WGTACW 1 cut(s) 305
TauI GCSGC 3 cut(s) 62, 993, 1031
Tru1I TTAA 1 cut(s) 840
Tru9I TTAA 1 cut(s) 840
TscAI CASTG 2 cut(s) 754, 760
TseFI GTSAC 1 cut(s) 884
Tsp45I GTSAC 1 cut(s) 884
TspDTI ATGAA 3 cut(s) 43, 781, 905
TspGWI ACGGA 3 cut(s) 367, 797, 927
TspRI CASTG 2 cut(s) 754, 760
Tth111I GACNNNGTC 2 cut(s) 422, 824
VpaK11BI GGWCC 2 cut(s) 514, 1003
XapI RAATTY 1 cut(s) 611
XceI RCATGY 1 cut(s) 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 3 cut(s) 71, 191, 464
ZraI GACGTC 2 cut(s) 421, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.