FvH4_4g14640

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000716
Physical Location & Seq
Forward (+)
18327654 .. 18330392
2739 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14640.t1

Sequence Viewer

Length: 1215 bp
ATGGGAGGGAAGAAGCATCAAGTTGCTGCAGAGATGCTCACTACTATCAACCAAAGAACCCCTCTAGTCCCCGTTAAACTGACCGTTGATCTTGGCGGTCTATCACTTTGGGTAGATTGTGAGCGAGGCTATGTCTCCTCCACCTACAAGCCCGCCCACTGTGGATCCTCGCAGTGCAAACTTGTTGGGTCCAAGGCGTGTACCACAGAGTGCTACCGATCATCCCCAAAACCAGGCTGCAACAACAACACTTGTAACATCTTCCCGGACAACCCTCTCGCCACCACACTCACCGGCGACGGTCAACTCGGTCAAGACGTGGTCTCCCTCCGATCCACCGATGGATCTAATCCAGGTCCGGTTGTTTCTACTCCAAACATCCTCTTCAGTTGTGGTGACACTGATCTCTTGGCAAACCTTTCCGCCGGAGTTAAGGGCATGGCTGGCCTTGGCAGACCTAAAGTCGGACTTCCTTCCCAGTTGGCATCCGCTTTTAGCTTGGACAGAAAATTCGCCATTTGCCTGACCTCTACAGCAAAATCGAAAGGCGTCATATTTTTCGGCCGCAGTCCTTATGTTTTCCTTCCCGGCATTGCTGTCTCCAAGTCACTTACGTACACCAAACTGATCCTGAACCCTGTAAGCACAGCCGGTACTTATTTCGAAGGCGATGCTTCTTCAGAATACTTCATTGGAGTAACCTCCATCAAGGTCAACGGAAAAGTTGTTCCGTTGAATACTACATTGCTAGCCATTGATGAAGAAGGGTATGGCGGCACAAGAATCAGCACTCTGAAGCCTTACACGGTTTTGGAGACTTCGATCTATAAGGCTGTCGTGAATGCGTTTGTGAAATCACTTGCTCAGATACCAATAGTGAAATCCGTAGCGCCGTTTGGTGCTTGCTTTGATTCAAAGAGGATTGGTAGCACTCGTGTCGGCCCGGGTGTGCCTGCGATTGACCTTGTGTTGAGCAAGGGAGTGTACTGGAGAGTGTTTGGAGCAAACTCGATGGTGCAGGTGAGCAAGGACGTGTTGTGTTTAGGCTTTGTGAATGGTGGTGTGAGGCCAAGGACTTCTATTGTAATTGGAGGGCATCAAACTGAGGATAATCTTCTTCAGTTTGATTTGGCTAACAAGAGGCTCGGATTCAGCTCCTCGTTGTTGTTCAGGCAGACAAACTGTGCCAACTTCAACTTCACTTCCACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

405

Amino Acids

42.76

Weight (kDa)

9.25

Isoelectric Point (pI)

32.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 13 - 188 1.8e-43 Xylanase inhibitor N-terminal
TAXi_C PF14541 228 - 385 1e-60 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1009
Acc36I ACCTGC 1 cut(s) 1009
AciI CCGC 6 cut(s) 96, 153, 423, 489, 565, 774
AclWI GGATC 5 cut(s) 159, 172, 327, 352, 622
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 1 cut(s) 509
AcuI CTGAAG 4 cut(s) 370, 663, 815, 1103
AcyI GRCGYC 1 cut(s) 549
AdeI CACNNNGTG 1 cut(s) 210
AfaI GTAC 4 cut(s) 202, 617, 655, 986
AfiI CCNNNNNNNGG 2 cut(s) 233, 464
AflIII ACRYGT 1 cut(s) 1032
AgsI TTSAA 3 cut(s) 736, 915, 1195
AhdI GACNNNNNGTC 1 cut(s) 461
AjiI CACGTC 2 cut(s) 319, 1033
AjnI CCWGG 2 cut(s) 232, 352
AjuI GAANNNNNNNTTGG 4 cut(s) 675, 707, 1181, 1213
AloI GAACNNNNNNTCC 2 cut(s) 711, 743
AluBI AGCT 2 cut(s) 498, 1155
AluI AGCT 2 cut(s) 498, 1155
Alw26I GTCTC 4 cut(s) 139, 328, 604, 809
AlwI GGATC 5 cut(s) 159, 172, 327, 352, 622
Ama87I CYCGRG 1 cut(s) 943
AoxI GGCC 4 cut(s) 445, 562, 940, 1067
ApeKI GCWGC 2 cut(s) 26, 237
ApoI RAATTY 1 cut(s) 509
ArsI GACNNNNNNTTYG 2 cut(s) 494, 526
AspLEI GCGC 1 cut(s) 892
AspS9I GGNCC 3 cut(s) 189, 356, 941
AsuC2I CCSGG 4 cut(s) 266, 588, 944, 945
AsuHPI GGTGA 3 cut(s) 283, 407, 1033
AsuII TTCGAA 1 cut(s) 663
AsuNHI GCTAGC 1 cut(s) 748
AvaI CYCGRG 1 cut(s) 943
AvaII GGWCC 2 cut(s) 189, 356
BamHI GGATCC 1 cut(s) 164
BauI CACGAG 1 cut(s) 933
BbvI GCAGC 2 cut(s) 13, 224
BccI CCATC 3 cut(s) 335, 713, 1006
BceAI ACGGC 1 cut(s) 877
BcgI CGANNNNNNTGC 4 cut(s) 653, 687, 919, 953
BciT130I CCWGG 2 cut(s) 234, 354
BcnI CCSGG 4 cut(s) 266, 588, 944, 945
BcoDI GTCTC 4 cut(s) 139, 328, 604, 809
BfaI CTAG 2 cut(s) 65, 749
BfmI CTRYAG 2 cut(s) 27, 531
BfoI RGCGCY 1 cut(s) 893
BfuAI ACCTGC 1 cut(s) 1009
BisI GCNGC 4 cut(s) 27, 238, 565, 775
BlsI GCNGC 4 cut(s) 28, 239, 566, 776
Bme1390I CCNGG 6 cut(s) 234, 266, 354, 588, 944, 945
Bme18I GGWCC 2 cut(s) 189, 356
BmeRI GACNNNNNGTC 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 943
BmgBI CACGTC 2 cut(s) 319, 1033
BmgT120I GGNCC 3 cut(s) 189, 356, 941
BmiI GGNNCC 2 cut(s) 166, 190
BmrFI CCNGG 6 cut(s) 234, 266, 354, 588, 944, 945
BmrI ACTGGG 1 cut(s) 472
BmsI GCATC 5 cut(s) 24, 25, 494, 661, 1105
BmtI GCTAGC 1 cut(s) 752
BmuI ACTGGG 1 cut(s) 472
BpmI CTGGAG 1 cut(s) 1009
Bpu14I TTCGAA 1 cut(s) 663
BpuMI CCSGG 4 cut(s) 266, 588, 944, 945
BsaAI YACGTR 1 cut(s) 615
BsaHI GRCGYC 1 cut(s) 549
BsaI GGTCTC 1 cut(s) 328
BsaJI CCNNGG 4 cut(s) 192, 448, 943, 1070
BsaWI WCCGGW 1 cut(s) 358
BsaXI ACNNNNNCTCC 2 cut(s) 308, 338
Bsc4I CCNNNNNNNGG 2 cut(s) 233, 464
Bse118I RCCGGY 2 cut(s) 293, 650
Bse1I ACTGG 2 cut(s) 478, 992
Bse3DI GCAATG 2 cut(s) 591, 743
BseBI CCWGG 2 cut(s) 234, 354
BseDI CCNNGG 4 cut(s) 192, 448, 943, 1070
BseGI GGATG 3 cut(s) 221, 378, 485
BseLI CCNNNNNNNGG 2 cut(s) 233, 464
BseMI GCAATG 2 cut(s) 591, 743
BseMII CTCAG 2 cut(s) 878, 1095
BseNI ACTGG 2 cut(s) 478, 992
BseRI GAGGAG 2 cut(s) 127, 1147
BseX3I CGGCCG 1 cut(s) 562
BseXI GCAGC 2 cut(s) 13, 224
BsgI GTGCAG 1 cut(s) 1037
Bsh1285I CGRYCG 1 cut(s) 565
BshFI GGCC 4 cut(s) 447, 564, 942, 1069
BsiEI CGRYCG 1 cut(s) 565
BsiHKCI CYCGRG 1 cut(s) 943
BsiSI CCGG 7 cut(s) 266, 294, 359, 426, 588, 651, 944
BslFI GGGAC 1 cut(s) 53
BslI CCNNNNNNNGG 2 cut(s) 233, 464
BsmAI GTCTC 4 cut(s) 139, 328, 604, 809
BsmFI GGGAC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 847
BsnI GGCC 4 cut(s) 447, 564, 942, 1069
Bso31I GGTCTC 1 cut(s) 328
BsoBI CYCGRG 1 cut(s) 943
Bsp119I TTCGAA 1 cut(s) 663
Bsp143I GATC 8 cut(s) 88, 164, 218, 332, 344, 403, 627, 822
BspACI CCGC 6 cut(s) 96, 153, 423, 489, 565, 774
BspANI GGCC 4 cut(s) 447, 564, 942, 1069
BspCNI CTCAG 2 cut(s) 877, 1096
BspLI GGNNCC 2 cut(s) 166, 190
BspMAI CTGCAG 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 1009
BspOI GCTAGC 1 cut(s) 752
BspPI GGATC 5 cut(s) 159, 172, 327, 352, 622
BspT104I TTCGAA 1 cut(s) 663
BspTNI GGTCTC 1 cut(s) 328
BsrDI GCAATG 2 cut(s) 591, 743
BsrFI RCCGGY 2 cut(s) 293, 650
BsrI ACTGG 2 cut(s) 478, 992
BssAI RCCGGY 2 cut(s) 293, 650
BssECI CCNNGG 4 cut(s) 192, 448, 943, 1070
BssMI GATC 8 cut(s) 88, 164, 218, 332, 344, 403, 627, 822
BssNI GRCGYC 1 cut(s) 549
BssSI CACGAG 1 cut(s) 933
BssT1I CCWWGG 3 cut(s) 192, 448, 1070
Bst2BI CACGAG 1 cut(s) 933
Bst2UI CCWGG 2 cut(s) 234, 354
Bst4CI ACNGT 5 cut(s) 85, 161, 302, 808, 1184
Bst6I CTCTTC 1 cut(s) 389
BstACI GRCGYC 1 cut(s) 549
BstBAI YACGTR 1 cut(s) 615
BstBI TTCGAA 1 cut(s) 663
BstC8I GCNNGC 5 cut(s) 153, 445, 750, 904, 954
BstDEI CTNAG 3 cut(s) 864, 1104, 1212
BstF5I GGATG 3 cut(s) 221, 378, 485
BstH2I RGCGCY 1 cut(s) 893
BstHHI GCGC 1 cut(s) 892
BstKTI GATC 8 cut(s) 91, 167, 221, 335, 347, 406, 630, 825
BstMAI GTCTC 4 cut(s) 139, 328, 604, 809
BstMBI GATC 8 cut(s) 88, 164, 218, 332, 344, 403, 627, 822
BstMCI CGRYCG 1 cut(s) 565
BstMWI GCNNNNNNNGC 1 cut(s) 444
BstNI CCWGG 2 cut(s) 234, 354
BstSCI CCNGG 6 cut(s) 232, 264, 352, 586, 942, 943
BstSFI CTRYAG 2 cut(s) 27, 531
BstSNI TACGTA 1 cut(s) 615
BstV1I GCAGC 2 cut(s) 13, 224
BstX2I RGATCY 2 cut(s) 164, 344
BstYI RGATCY 2 cut(s) 164, 344
BstZI CGGCCG 1 cut(s) 562
BsuRI GGCC 4 cut(s) 447, 564, 942, 1069
BtgZI GCGATG 1 cut(s) 684
BtrI CACGTC 2 cut(s) 319, 1033
BtsCI GGATG 3 cut(s) 221, 378, 485
BtsI GCAGTG 1 cut(s) 179
BtsIMutI CAGTG 3 cut(s) 157, 179, 399
BveI ACCTGC 1 cut(s) 1009
Cac8I GCNNGC 5 cut(s) 153, 445, 750, 904, 954
CfoI GCGC 1 cut(s) 892
Cfr10I RCCGGY 2 cut(s) 293, 650
Cfr13I GGNCC 3 cut(s) 189, 356, 941
Cfr9I CCCGGG 1 cut(s) 943
CseI GACGC 1 cut(s) 538
Csp6I GTAC 4 cut(s) 201, 616, 654, 985
CviAII CATG 1 cut(s) 439
CviQI GTAC 4 cut(s) 201, 616, 654, 985
DdeI CTNAG 3 cut(s) 864, 1104, 1212
DpnI GATC 8 cut(s) 90, 166, 220, 334, 346, 405, 629, 824
DpnII GATC 8 cut(s) 88, 164, 218, 332, 344, 403, 627, 822
DraIII CACNNNGTG 1 cut(s) 210
DriI GACNNNNNGTC 1 cut(s) 461
EaeI YGGCCR 1 cut(s) 562
EagI CGGCCG 1 cut(s) 562
Eam1104I CTCTTC 1 cut(s) 389
Eam1105I GACNNNNNGTC 1 cut(s) 461
EarI CTCTTC 1 cut(s) 389
EciI GGCGGA 1 cut(s) 412
EclXI CGGCCG 1 cut(s) 562
Eco105I TACGTA 1 cut(s) 615
Eco130I CCWWGG 3 cut(s) 192, 448, 1070
Eco31I GGTCTC 1 cut(s) 328
Eco47I GGWCC 2 cut(s) 189, 356
Eco52I CGGCCG 1 cut(s) 562
Eco57I CTGAAG 4 cut(s) 370, 663, 815, 1103
Eco88I CYCGRG 1 cut(s) 943
EcoRII CCWGG 2 cut(s) 232, 352
EcoT14I CCWWGG 3 cut(s) 192, 448, 1070
ErhI CCWWGG 3 cut(s) 192, 448, 1070
FaeI CATG 1 cut(s) 442
FaiI YATR 6 cut(s) 132, 440, 554, 576, 771, 828
FalI AAGNNNNNCTT 2 cut(s) 453, 485
FaqI GGGAC 1 cut(s) 53
FatI CATG 1 cut(s) 438
FauI CCCGC 1 cut(s) 160
Fnu4HI GCNGC 4 cut(s) 27, 238, 565, 775
FokI GGATG 3 cut(s) 208, 365, 472
Fsp4HI GCNGC 4 cut(s) 27, 238, 565, 775
FspBI CTAG 2 cut(s) 65, 749
GlaI GCGC 1 cut(s) 891
GluI GCNGC 4 cut(s) 27, 238, 565, 775
GsuI CTGGAG 1 cut(s) 1009
HaeII RGCGCY 1 cut(s) 893
HaeIII GGCC 4 cut(s) 447, 564, 942, 1069
HapII CCGG 7 cut(s) 266, 294, 359, 426, 588, 651, 944
HgaI GACGC 1 cut(s) 538
HhaI GCGC 1 cut(s) 892
Hin1I GRCGYC 1 cut(s) 549
Hin1II CATG 1 cut(s) 442
Hin6I GCGC 1 cut(s) 890
HinP1I GCGC 1 cut(s) 890
HincII GTYRAC 2 cut(s) 305, 715
HindII GTYRAC 2 cut(s) 305, 715
HinfI GANTC 3 cut(s) 783, 911, 1149
HpaII CCGG 7 cut(s) 266, 294, 359, 426, 588, 651, 944
HphI GGTGA 3 cut(s) 283, 407, 1033
Hpy166II GTNNAC 5 cut(s) 201, 305, 618, 715, 985
Hpy188I TCNGA 6 cut(s) 332, 467, 682, 795, 867, 1148
Hpy188III TCNNGA 3 cut(s) 314, 631, 838
Hpy8I GTNNAC 5 cut(s) 201, 305, 618, 715, 985
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 4 cut(s) 483, 593, 659, 758
HpyCH4III ACNGT 5 cut(s) 85, 161, 302, 808, 1184
HpyCH4IV ACGT 3 cut(s) 318, 614, 1032
HpyCH4V TGCA 4 cut(s) 29, 177, 240, 1018
HpyF10VI GCNNNNNNNGC 1 cut(s) 444
HpyF3I CTNAG 3 cut(s) 864, 1104, 1212
HpySE526I ACGT 3 cut(s) 318, 614, 1032
Hsp92I GRCGYC 1 cut(s) 549
Hsp92II CATG 1 cut(s) 442
HspAI GCGC 1 cut(s) 890
Kzo9I GATC 8 cut(s) 88, 164, 218, 332, 344, 403, 627, 822
LmnI GCTCC 2 cut(s) 1001, 1160
Lsp1109I GCAGC 2 cut(s) 13, 224
LweI GCATC 5 cut(s) 24, 25, 494, 661, 1105
MaeI CTAG 2 cut(s) 65, 749
MaeII ACGT 3 cut(s) 318, 614, 1032
MaeIII GTNAC 4 cut(s) 254, 395, 606, 697
MalI GATC 8 cut(s) 90, 166, 220, 334, 346, 405, 629, 824
MboI GATC 8 cut(s) 88, 164, 218, 332, 344, 403, 627, 822
MboII GAAGA 7 cut(s) 22, 253, 376, 669, 773, 1106, 1109
MflI RGATCY 2 cut(s) 164, 344
MluCI AATT 2 cut(s) 509, 1086
MmeI TCCRAC 1 cut(s) 445
MseI TTAA 2 cut(s) 75, 432
MspI CCGG 7 cut(s) 266, 294, 359, 426, 588, 651, 944
MspR9I CCNGG 6 cut(s) 234, 266, 354, 588, 944, 945
Mva1269I GAATGC 1 cut(s) 847
MvaI CCWGG 2 cut(s) 234, 354
MwoI GCNNNNNNNGC 1 cut(s) 444
NciI CCSGG 4 cut(s) 266, 588, 944, 945
NdeII GATC 8 cut(s) 88, 164, 218, 332, 344, 403, 627, 822
NheI GCTAGC 1 cut(s) 748
NlaIII CATG 1 cut(s) 442
NlaIV GGNNCC 2 cut(s) 166, 190
NmuCI GTSAC 2 cut(s) 395, 606
NspV TTCGAA 1 cut(s) 663
PaqCI CACCTGC 1 cut(s) 1009
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 1 cut(s) 847
PfeI GAWTC 3 cut(s) 783, 911, 1149
PflFI GACNNNGTC 1 cut(s) 320
PfoI TCCNGGA 1 cut(s) 264
PkrI GCNGC 4 cut(s) 28, 239, 566, 776
Ppu21I YACGTR 1 cut(s) 615
Psp6I CCWGG 2 cut(s) 232, 352
PspGI CCWGG 2 cut(s) 232, 352
PspN4I GGNNCC 2 cut(s) 166, 190
PspPI GGNCC 3 cut(s) 189, 356, 941
PstI CTGCAG 1 cut(s) 31
PsuI RGATCY 2 cut(s) 164, 344
PsyI GACNNNGTC 1 cut(s) 320
RsaI GTAC 4 cut(s) 202, 617, 655, 986
RsaNI GTAC 4 cut(s) 201, 616, 654, 985
SaqAI TTAA 2 cut(s) 75, 432
SatI GCNGC 4 cut(s) 27, 238, 565, 775
Sau3AI GATC 8 cut(s) 88, 164, 218, 332, 344, 403, 627, 822
Sau96I GGNCC 3 cut(s) 189, 356, 941
ScrFI CCNGG 6 cut(s) 234, 266, 354, 588, 944, 945
SfaNI GCATC 5 cut(s) 24, 25, 494, 661, 1105
SfcI CTRYAG 2 cut(s) 27, 531
SfuI TTCGAA 1 cut(s) 663
SgrAI CRCCGGYG 1 cut(s) 293
SinI GGWCC 2 cut(s) 189, 356
SmaI CCCGGG 1 cut(s) 945
SnaBI TACGTA 1 cut(s) 615
Sse9I AATT 2 cut(s) 509, 1086
SsiI CCGC 6 cut(s) 96, 153, 423, 489, 565, 774
SspMI CTAG 2 cut(s) 65, 749
StyD4I CCNGG 6 cut(s) 232, 264, 352, 586, 942, 943
StyI CCWWGG 3 cut(s) 192, 448, 1070
TaaI ACNGT 5 cut(s) 85, 161, 302, 808, 1184
TaiI ACGT 3 cut(s) 321, 617, 1035
TaqI TCGA 4 cut(s) 542, 663, 821, 1010
TaqII GACCGA 1 cut(s) 299
TasI AATT 2 cut(s) 509, 1086
TatI WGTACW 1 cut(s) 984
TauI GCSGC 2 cut(s) 567, 777
TfiI GAWTC 3 cut(s) 783, 911, 1149
Tru1I TTAA 2 cut(s) 75, 432
Tru9I TTAA 2 cut(s) 75, 432
TscAI CASTG 3 cut(s) 164, 179, 406
TseFI GTSAC 2 cut(s) 395, 606
TseI GCWGC 2 cut(s) 26, 237
Tsp45I GTSAC 2 cut(s) 395, 606
TspDTI ATGAA 2 cut(s) 679, 774
TspGWI ACGGA 3 cut(s) 720, 732, 874
TspMI CCCGGG 1 cut(s) 943
TspRI CASTG 3 cut(s) 164, 179, 406
Tth111I GACNNNGTC 1 cut(s) 320
VpaK11BI GGWCC 2 cut(s) 189, 356
XapI RAATTY 1 cut(s) 509
XmaI CCCGGG 1 cut(s) 943
XspI CTAG 2 cut(s) 65, 749
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.