Belongs to the peptidase A1 family
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 350, 1114 |
| AasI | GACNNNNNNGTC | 2 cut(s) | 365, 844 |
| AatII | GACGTC | 1 cut(s) | 408 |
| AbsI | CCTCGAGG | 1 cut(s) | 908 |
| Acc36I | ACCTGC | 2 cut(s) | 350, 1114 |
| AccI | GTMKAC | 2 cut(s) | 210, 690 |
| AccII | CGCG | 9 cut(s) | 251, 253, 281, 463, 482, 578, 625, 1036, 1038 |
| AclI | AACGTT | 1 cut(s) | 1137 |
| AclWI | GGATC | 1 cut(s) | 761 |
| AcoI | YGGCCR | 4 cut(s) | 80, 193, 538, 1236 |
| AcuI | CTGAAG | 1 cut(s) | 994 |
| AcyI | GRCGYC | 4 cut(s) | 405, 642, 746, 864 |
| AfaI | GTAC | 3 cut(s) | 242, 628, 725 |
| AfiI | CCNNNNNNNGG | 6 cut(s) | 323, 462, 511, 1000, 1210, 1245 |
| AflIII | ACRYGT | 4 cut(s) | 228, 623, 669, 1286 |
| AgeI | ACCGGT | 1 cut(s) | 428 |
| AgsI | TTSAA | 4 cut(s) | 24, 46, 925, 1300 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 449 |
| AjiI | CACGTC | 2 cut(s) | 1242, 1308 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1286, 1318 |
| AluBI | AGCT | 5 cut(s) | 394, 585, 956, 1207, 1260 |
| AluI | AGCT | 5 cut(s) | 394, 585, 956, 1207, 1260 |
| Alw21I | GWGCWC | 3 cut(s) | 275, 396, 1034 |
| Alw26I | GTCTC | 1 cut(s) | 109 |
| AlwI | GGATC | 1 cut(s) | 761 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 706 |
| Ama87I | CYCGRG | 3 cut(s) | 439, 679, 908 |
| ApeKI | GCWGC | 2 cut(s) | 294, 1222 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 581, 613 |
| AseI | ATTAAT | 2 cut(s) | 729, 1314 |
| AsiGI | ACCGGT | 1 cut(s) | 428 |
| AspA2I | CCTAGG | 1 cut(s) | 187 |
| AspLEI | GCGC | 5 cut(s) | 253, 482, 484, 986, 1038 |
| AspS9I | GGNCC | 7 cut(s) | 265, 443, 662, 873, 904, 992, 1043 |
| AsuC2I | CCSGG | 4 cut(s) | 324, 440, 441, 718 |
| AsuHPI | GGTGA | 5 cut(s) | 343, 401, 445, 869, 1138 |
| AvaI | CYCGRG | 3 cut(s) | 439, 679, 908 |
| AvaII | GGWCC | 4 cut(s) | 443, 662, 873, 904 |
| AvrII | CCTAGG | 1 cut(s) | 187 |
| BaeGI | GKGCMC | 1 cut(s) | 1056 |
| BalI | TGGCCA | 1 cut(s) | 1238 |
| BanII | GRGCYC | 2 cut(s) | 396, 1203 |
| Bbv12I | GWGCWC | 3 cut(s) | 275, 396, 1034 |
| BbvI | GCAGC | 2 cut(s) | 281, 1209 |
| BccI | CCATC | 3 cut(s) | 520, 611, 836 |
| BceAI | ACGGC | 6 cut(s) | 655, 759, 806, 914, 1030, 1177 |
| BcnI | CCSGG | 4 cut(s) | 324, 440, 441, 718 |
| BcoDI | GTCTC | 1 cut(s) | 109 |
| BfaI | CTAG | 3 cut(s) | 176, 188, 1250 |
| BfmI | CTRYAG | 1 cut(s) | 1223 |
| BfoI | RGCGCY | 1 cut(s) | 987 |
| BfuAI | ACCTGC | 2 cut(s) | 350, 1114 |
| BisI | GCNGC | 7 cut(s) | 193, 295, 298, 346, 541, 1165, 1223 |
| BlnI | CCTAGG | 1 cut(s) | 187 |
| BlpI | GCTNAGC | 1 cut(s) | 1028 |
| BlsI | GCNGC | 7 cut(s) | 194, 296, 299, 347, 542, 1166, 1224 |
| Bme1390I | CCNGG | 4 cut(s) | 324, 440, 441, 718 |
| Bme18I | GGWCC | 4 cut(s) | 443, 662, 873, 904 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 449 |
| BmeT110I | CYCGRG | 3 cut(s) | 439, 679, 908 |
| BmgBI | CACGTC | 2 cut(s) | 1242, 1308 |
| BmgT120I | GGNCC | 7 cut(s) | 265, 443, 662, 873, 904, 992, 1043 |
| BmiI | GGNNCC | 6 cut(s) | 433, 444, 467, 664, 874, 1202 |
| BmrFI | CCNGG | 4 cut(s) | 324, 440, 441, 718 |
| BmrI | ACTGGG | 2 cut(s) | 95, 262 |
| BmsI | GCATC | 3 cut(s) | 317, 407, 581 |
| BmuI | ACTGGG | 2 cut(s) | 95, 262 |
| BpmI | CTGGAG | 3 cut(s) | 1114, 1187, 1229 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 1028 |
| BpuMI | CCSGG | 4 cut(s) | 324, 440, 441, 718 |
| BsaAI | YACGTR | 4 cut(s) | 229, 240, 670, 1287 |
| BsaBI | GATNNNNATC | 1 cut(s) | 944 |
| BsaHI | GRCGYC | 4 cut(s) | 405, 642, 746, 864 |
| BsaJI | CCNNGG | 4 cut(s) | 187, 439, 760, 1147 |
| BsaWI | WCCGGW | 1 cut(s) | 428 |
| Bsc4I | CCNNNNNNNGG | 6 cut(s) | 323, 462, 511, 1000, 1210, 1245 |
| Bse118I | RCCGGY | 2 cut(s) | 290, 428 |
| Bse1I | ACTGG | 6 cut(s) | 101, 196, 268, 418, 734, 994 |
| Bse8I | GATNNNNATC | 1 cut(s) | 944 |
| BseDI | CCNNGG | 4 cut(s) | 187, 439, 760, 1147 |
| BseGI | GGATG | 6 cut(s) | 233, 332, 398, 531, 572, 786 |
| BseJI | GATNNNNATC | 1 cut(s) | 944 |
| BseLI | CCNNNNNNNGG | 6 cut(s) | 323, 462, 511, 1000, 1210, 1245 |
| BseMII | CTCAG | 2 cut(s) | 927, 1019 |
| BseNI | ACTGG | 6 cut(s) | 101, 196, 268, 418, 734, 994 |
| BsePI | GCGCGC | 1 cut(s) | 480 |
| BseRI | GAGGAG | 2 cut(s) | 23, 301 |
| BseSI | GKGCMC | 1 cut(s) | 1056 |
| BseX3I | CGGCCG | 1 cut(s) | 538 |
| BseXI | GCAGC | 2 cut(s) | 281, 1209 |
| BseYI | CCCAGC | 1 cut(s) | 1055 |
| BsgI | GTGCAG | 1 cut(s) | 1142 |
| Bsh1236I | CGCG | 9 cut(s) | 251, 253, 281, 463, 482, 578, 625, 1036, 1038 |
| Bsh1285I | CGRYCG | 2 cut(s) | 541, 852 |
| BshTI | ACCGGT | 1 cut(s) | 428 |
| BsiEI | CGRYCG | 2 cut(s) | 541, 852 |
| BsiHKAI | GWGCWC | 3 cut(s) | 275, 396, 1034 |
| BsiHKCI | CYCGRG | 3 cut(s) | 439, 679, 908 |
| BsiSI | CCGG | 6 cut(s) | 79, 291, 324, 429, 440, 718 |
| BslFI | GGGAC | 7 cut(s) | 83, 149, 456, 648, 671, 688, 886 |
| BslI | CCNNNNNNNGG | 6 cut(s) | 323, 462, 511, 1000, 1210, 1245 |
| BsmAI | GTCTC | 1 cut(s) | 109 |
| BsmFI | GGGAC | 7 cut(s) | 83, 149, 456, 648, 671, 688, 886 |
| BsoBI | CYCGRG | 3 cut(s) | 439, 679, 908 |
| Bsp1286I | GDGCHC | 5 cut(s) | 275, 396, 1034, 1056, 1203 |
| Bsp1407I | TGTACA | 1 cut(s) | 723 |
| Bsp143I | GATC | 5 cut(s) | 708, 766, 849, 879, 1191 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 1028 |
| Bsp68I | TCGCGA | 1 cut(s) | 281 |
| BspCNI | CTCAG | 2 cut(s) | 928, 1020 |
| BspFNI | CGCG | 9 cut(s) | 251, 253, 281, 463, 482, 578, 625, 1036, 1038 |
| BspLI | GGNNCC | 6 cut(s) | 433, 444, 467, 664, 874, 1202 |
| BspMAI | CTGCAG | 1 cut(s) | 1227 |
| BspMI | ACCTGC | 2 cut(s) | 350, 1114 |
| BspPI | GGATC | 1 cut(s) | 761 |
| BsrFI | RCCGGY | 2 cut(s) | 290, 428 |
| BsrGI | TGTACA | 1 cut(s) | 723 |
| BsrI | ACTGG | 6 cut(s) | 101, 196, 268, 418, 734, 994 |
| BssAI | RCCGGY | 2 cut(s) | 290, 428 |
| BssECI | CCNNGG | 4 cut(s) | 187, 439, 760, 1147 |
| BssHII | GCGCGC | 1 cut(s) | 480 |
| BssMI | GATC | 5 cut(s) | 708, 766, 849, 879, 1191 |
| BssNI | GRCGYC | 4 cut(s) | 405, 642, 746, 864 |
| BssT1I | CCWWGG | 3 cut(s) | 187, 760, 1147 |
| Bst4CI | ACNGT | 6 cut(s) | 367, 457, 662, 857, 889, 904 |
| Bst6I | CTCTTC | 2 cut(s) | 41, 58 |
| BstACI | GRCGYC | 4 cut(s) | 405, 642, 746, 864 |
| BstAUI | TGTACA | 1 cut(s) | 723 |
| BstBAI | YACGTR | 4 cut(s) | 229, 240, 670, 1287 |
| BstC8I | GCNNGC | 6 cut(s) | 275, 279, 396, 478, 482, 1034 |
| BstDEI | CTNAG | 2 cut(s) | 936, 1028 |
| BstF5I | GGATG | 6 cut(s) | 233, 332, 398, 531, 572, 786 |
| BstFNI | CGCG | 9 cut(s) | 251, 253, 281, 463, 482, 578, 625, 1036, 1038 |
| BstH2I | RGCGCY | 1 cut(s) | 987 |
| BstHHI | GCGC | 5 cut(s) | 253, 482, 484, 986, 1038 |
| BstKTI | GATC | 5 cut(s) | 711, 769, 852, 882, 1194 |
| BstMAI | GTCTC | 1 cut(s) | 109 |
| BstMBI | GATC | 5 cut(s) | 708, 766, 849, 879, 1191 |
| BstMCI | CGRYCG | 2 cut(s) | 541, 852 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 303, 990, 1033, 1042, 1051 |
| BstSCI | CCNGG | 4 cut(s) | 322, 438, 439, 716 |
| BstSFI | CTRYAG | 1 cut(s) | 1223 |
| BstSLI | GKGCMC | 1 cut(s) | 1056 |
| BstUI | CGCG | 9 cut(s) | 251, 253, 281, 463, 482, 578, 625, 1036, 1038 |
| BstV1I | GCAGC | 2 cut(s) | 281, 1209 |
| BstZI | CGGCCG | 1 cut(s) | 538 |
| BtgZI | GCGATG | 1 cut(s) | 1248 |
| BtrI | CACGTC | 2 cut(s) | 1242, 1308 |
| BtsCI | GGATG | 6 cut(s) | 233, 332, 398, 531, 572, 786 |
| BtsIMutI | CAGTG | 2 cut(s) | 275, 885 |
| BtuMI | TCGCGA | 1 cut(s) | 281 |
| BveI | ACCTGC | 2 cut(s) | 350, 1114 |
| Cac8I | GCNNGC | 6 cut(s) | 275, 279, 396, 478, 482, 1034 |
| CaiI | CAGNNNCTG | 1 cut(s) | 706 |
| CfoI | GCGC | 5 cut(s) | 253, 482, 484, 986, 1038 |
| Cfr10I | RCCGGY | 2 cut(s) | 290, 428 |
| Cfr13I | GGNCC | 7 cut(s) | 265, 443, 662, 873, 904, 992, 1043 |
| Cfr9I | CCCGGG | 1 cut(s) | 439 |
| CseI | GACGC | 5 cut(s) | 122, 631, 735, 847, 853 |
| Csp6I | GTAC | 3 cut(s) | 241, 627, 724 |
| CspAI | ACCGGT | 1 cut(s) | 428 |
| CviAII | CATG | 1 cut(s) | 964 |
| CviQI | GTAC | 3 cut(s) | 241, 627, 724 |
| DdeI | CTNAG | 2 cut(s) | 936, 1028 |
| DpnI | GATC | 5 cut(s) | 710, 768, 851, 881, 1193 |
| DpnII | GATC | 5 cut(s) | 708, 766, 849, 879, 1191 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 365, 844 |
| DriI | GACNNNNNGTC | 1 cut(s) | 449 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 365, 844 |
| EaeI | YGGCCR | 4 cut(s) | 80, 193, 538, 1236 |
| EagI | CGGCCG | 1 cut(s) | 538 |
| Eam1104I | CTCTTC | 2 cut(s) | 41, 58 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 449 |
| EarI | CTCTTC | 2 cut(s) | 41, 58 |
| Ecl136II | GAGCTC | 1 cut(s) | 394 |
| EclXI | CGGCCG | 1 cut(s) | 538 |
| Eco130I | CCWWGG | 3 cut(s) | 187, 760, 1147 |
| Eco147I | AGGCCT | 2 cut(s) | 504, 914 |
| Eco24I | GRGCYC | 2 cut(s) | 396, 1203 |
| Eco47I | GGWCC | 4 cut(s) | 443, 662, 873, 904 |
| Eco52I | CGGCCG | 1 cut(s) | 538 |
| Eco53kI | GAGCTC | 1 cut(s) | 394 |
| Eco57I | CTGAAG | 1 cut(s) | 994 |
| Eco88I | CYCGRG | 3 cut(s) | 439, 679, 908 |
| EcoICRI | GAGCTC | 1 cut(s) | 394 |
| EcoT14I | CCWWGG | 3 cut(s) | 187, 760, 1147 |
| EcoT38I | GRGCYC | 2 cut(s) | 396, 1203 |
| ErhI | CCWWGG | 3 cut(s) | 187, 760, 1147 |
| FaeI | CATG | 1 cut(s) | 967 |
| FaiI | YATR | 6 cut(s) | 12, 170, 205, 920, 965, 1118 |
| FaqI | GGGAC | 7 cut(s) | 83, 149, 456, 648, 671, 688, 886 |
| FatI | CATG | 1 cut(s) | 963 |
| FauI | CCCGC | 2 cut(s) | 146, 256 |
| FblI | GTMKAC | 2 cut(s) | 210, 690 |
| Fnu4HI | GCNGC | 7 cut(s) | 193, 295, 298, 346, 541, 1165, 1223 |
| FokI | GGATG | 6 cut(s) | 220, 339, 385, 538, 559, 773 |
| FriOI | GRGCYC | 2 cut(s) | 396, 1203 |
| Fsp4HI | GCNGC | 7 cut(s) | 193, 295, 298, 346, 541, 1165, 1223 |
| FspBI | CTAG | 3 cut(s) | 176, 188, 1250 |
| GlaI | GCGC | 5 cut(s) | 252, 481, 483, 985, 1037 |
| GluI | GCNGC | 7 cut(s) | 193, 295, 298, 346, 541, 1165, 1223 |
| GsaI | CCCAGC | 1 cut(s) | 1059 |
| GsuI | CTGGAG | 3 cut(s) | 1114, 1187, 1229 |
| HaeII | RGCGCY | 1 cut(s) | 987 |
| HapII | CCGG | 6 cut(s) | 79, 291, 324, 429, 440, 718 |
| HgaI | GACGC | 5 cut(s) | 122, 631, 735, 847, 853 |
| HhaI | GCGC | 5 cut(s) | 253, 482, 484, 986, 1038 |
| Hin1I | GRCGYC | 4 cut(s) | 405, 642, 746, 864 |
| Hin1II | CATG | 1 cut(s) | 967 |
| Hin6I | GCGC | 5 cut(s) | 251, 480, 482, 984, 1036 |
| HinP1I | GCGC | 5 cut(s) | 251, 480, 482, 984, 1036 |
| HincII | GTYRAC | 5 cut(s) | 211, 423, 691, 796, 811 |
| HindII | GTYRAC | 5 cut(s) | 211, 423, 691, 796, 811 |
| HinfI | GANTC | 2 cut(s) | 534, 1171 |
| HpaII | CCGG | 6 cut(s) | 79, 291, 324, 429, 440, 718 |
| HphI | GGTGA | 5 cut(s) | 343, 401, 445, 869, 1138 |
| Hpy166II | GTNNAC | 9 cut(s) | 211, 423, 637, 691, 796, 811, 1129, 1159, 1275 |
| Hpy188I | TCNGA | 5 cut(s) | 403, 778, 1077, 1176, 1196 |
| Hpy188III | TCNNGA | 3 cut(s) | 280, 1093, 1189 |
| Hpy8I | GTNNAC | 9 cut(s) | 211, 423, 637, 691, 796, 811, 1129, 1159, 1275 |
| HpyAV | CCTTC | 1 cut(s) | 570 |
| HpyCH4III | ACNGT | 6 cut(s) | 367, 457, 662, 857, 889, 904 |
| HpyCH4V | TGCA | 3 cut(s) | 330, 1123, 1225 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 303, 990, 1033, 1042, 1051 |
| HpyF3I | CTNAG | 2 cut(s) | 936, 1028 |
| Hsp92I | GRCGYC | 4 cut(s) | 405, 642, 746, 864 |
| Hsp92II | CATG | 1 cut(s) | 967 |
| HspAI | GCGC | 5 cut(s) | 251, 480, 482, 984, 1036 |
| Kzo9I | GATC | 5 cut(s) | 708, 766, 849, 879, 1191 |
| LmnI | GCTCC | 2 cut(s) | 846, 1206 |
| Lsp1109I | GCAGC | 2 cut(s) | 281, 1209 |
| LweI | GCATC | 3 cut(s) | 317, 407, 581 |
| MaeI | CTAG | 3 cut(s) | 176, 188, 1250 |
| MaeIII | GTNAC | 3 cut(s) | 367, 451, 931 |
| MalI | GATC | 5 cut(s) | 710, 768, 851, 881, 1193 |
| MboI | GATC | 5 cut(s) | 708, 766, 849, 879, 1191 |
| MboII | GAAGA | 4 cut(s) | 28, 31, 34, 45 |
| MhlI | GDGCHC | 5 cut(s) | 275, 396, 1034, 1056, 1203 |
| MlsI | TGGCCA | 1 cut(s) | 1238 |
| MluCI | AATT | 2 cut(s) | 566, 1315 |
| MluI | ACGCGT | 1 cut(s) | 623 |
| MluNI | TGGCCA | 1 cut(s) | 1238 |
| MlyI | GAGTC | 1 cut(s) | 528 |
| MmeI | TCCRAC | 2 cut(s) | 426, 459 |
| Mox20I | TGGCCA | 1 cut(s) | 1238 |
| MscI | TGGCCA | 1 cut(s) | 1238 |
| MseI | TTAA | 4 cut(s) | 729, 804, 1314, 1318 |
| Msp20I | TGGCCA | 1 cut(s) | 1238 |
| MspA1I | CMGCKG | 1 cut(s) | 1207 |
| MspI | CCGG | 6 cut(s) | 79, 291, 324, 429, 440, 718 |
| MspR9I | CCNGG | 4 cut(s) | 324, 440, 441, 718 |
| MvnI | CGCG | 9 cut(s) | 251, 253, 281, 463, 482, 578, 625, 1036, 1038 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 303, 990, 1033, 1042, 1051 |
| NciI | CCSGG | 4 cut(s) | 324, 440, 441, 718 |
| NdeII | GATC | 5 cut(s) | 708, 766, 849, 879, 1191 |
| NlaIII | CATG | 1 cut(s) | 967 |
| NlaIV | GGNNCC | 6 cut(s) | 433, 444, 467, 664, 874, 1202 |
| NmeAIII | GCCGAG | 2 cut(s) | 242, 516 |
| NmuCI | GTSAC | 3 cut(s) | 367, 451, 931 |
| NruI | TCGCGA | 1 cut(s) | 281 |
| PacI | TTAATTAA | 1 cut(s) | 1318 |
| PaeR7I | CTCGAG | 1 cut(s) | 908 |
| PaqCI | CACCTGC | 2 cut(s) | 350, 1114 |
| PauI | GCGCGC | 1 cut(s) | 480 |
| PceI | AGGCCT | 2 cut(s) | 504, 914 |
| PcsI | WCGNNNNNNNCGW | 9 cut(s) | 377, 402, 639, 666, 804, 819, 845, 861, 1283 |
| PfeI | GAWTC | 1 cut(s) | 1171 |
| PinAI | ACCGGT | 1 cut(s) | 428 |
| PkrI | GCNGC | 7 cut(s) | 194, 296, 299, 347, 542, 1166, 1224 |
| Ple19I | CGATCG | 1 cut(s) | 852 |
| PleI | GAGTC | 1 cut(s) | 528 |
| PpsI | GAGTC | 1 cut(s) | 528 |
| Ppu21I | YACGTR | 4 cut(s) | 229, 240, 670, 1287 |
| PshBI | ATTAAT | 2 cut(s) | 729, 1314 |
| Psp124BI | GAGCTC | 1 cut(s) | 396 |
| Psp1406I | AACGTT | 1 cut(s) | 1137 |
| PspFI | CCCAGC | 1 cut(s) | 1055 |
| PspN4I | GGNNCC | 6 cut(s) | 433, 444, 467, 664, 874, 1202 |
| PspPI | GGNCC | 7 cut(s) | 265, 443, 662, 873, 904, 992, 1043 |
| PspXI | VCTCGAGB | 1 cut(s) | 908 |
| PstI | CTGCAG | 1 cut(s) | 1227 |
| PstNI | CAGNNNCTG | 1 cut(s) | 706 |
| PteI | GCGCGC | 1 cut(s) | 480 |
| PvuI | CGATCG | 1 cut(s) | 852 |
| PvuII | CAGCTG | 1 cut(s) | 1207 |
| RruI | TCGCGA | 1 cut(s) | 281 |
| RsaI | GTAC | 3 cut(s) | 242, 628, 725 |
| RsaNI | GTAC | 3 cut(s) | 241, 627, 724 |
| SacI | GAGCTC | 1 cut(s) | 396 |
| SalI | GTCGAC | 2 cut(s) | 209, 689 |
| SaqAI | TTAA | 4 cut(s) | 729, 804, 1314, 1318 |
| SatI | GCNGC | 7 cut(s) | 193, 295, 298, 346, 541, 1165, 1223 |
| Sau3AI | GATC | 5 cut(s) | 708, 766, 849, 879, 1191 |
| Sau96I | GGNCC | 7 cut(s) | 265, 443, 662, 873, 904, 992, 1043 |
| SchI | GAGTC | 1 cut(s) | 528 |
| ScrFI | CCNGG | 4 cut(s) | 324, 440, 441, 718 |
| SduI | GDGCHC | 5 cut(s) | 275, 396, 1034, 1056, 1203 |
| SfaNI | GCATC | 3 cut(s) | 317, 407, 581 |
| SfcI | CTRYAG | 1 cut(s) | 1223 |
| Sfr274I | CTCGAG | 1 cut(s) | 908 |
| SgrDI | CGTCGACG | 1 cut(s) | 689 |
| SinI | GGWCC | 4 cut(s) | 443, 662, 873, 904 |
| SlaI | CTCGAG | 1 cut(s) | 908 |
| SmaI | CCCGGG | 1 cut(s) | 441 |
| SmlI | CTYRAG | 1 cut(s) | 908 |
| SmoI | CTYRAG | 1 cut(s) | 908 |
| Sse9I | AATT | 2 cut(s) | 566, 1315 |
| SseBI | AGGCCT | 2 cut(s) | 504, 914 |
| SspMI | CTAG | 3 cut(s) | 176, 188, 1250 |
| SstI | GAGCTC | 1 cut(s) | 396 |
| StuI | AGGCCT | 2 cut(s) | 504, 914 |
| StyD4I | CCNGG | 4 cut(s) | 322, 438, 439, 716 |
| StyI | CCWWGG | 3 cut(s) | 187, 760, 1147 |
| TaaI | ACNGT | 6 cut(s) | 367, 457, 662, 857, 889, 904 |
| TaqI | TCGA | 9 cut(s) | 183, 210, 588, 690, 848, 852, 909, 999, 1230 |
| TasI | AATT | 2 cut(s) | 566, 1315 |
| TatI | WGTACW | 1 cut(s) | 723 |
| TauI | GCSGC | 5 cut(s) | 195, 300, 348, 543, 1167 |
| TfiI | GAWTC | 1 cut(s) | 1171 |
| Tru1I | TTAA | 4 cut(s) | 729, 804, 1314, 1318 |
| Tru9I | TTAA | 4 cut(s) | 729, 804, 1314, 1318 |
| TscAI | CASTG | 2 cut(s) | 275, 892 |
| TseFI | GTSAC | 3 cut(s) | 367, 451, 931 |
| TseI | GCWGC | 2 cut(s) | 294, 1222 |
| Tsp45I | GTSAC | 3 cut(s) | 367, 451, 931 |
| TspDTI | ATGAA | 3 cut(s) | 775, 934, 980 |
| TspGWI | ACGGA | 1 cut(s) | 1039 |
| TspMI | CCCGGG | 1 cut(s) | 439 |
| TspRI | CASTG | 2 cut(s) | 275, 892 |
| VpaK11BI | GGWCC | 4 cut(s) | 443, 662, 873, 904 |
| VspI | ATTAAT | 2 cut(s) | 729, 1314 |
| XhoI | CTCGAG | 1 cut(s) | 908 |
| XmaI | CCCGGG | 1 cut(s) | 439 |
| XmaJI | CCTAGG | 1 cut(s) | 187 |
| XmiI | GTMKAC | 2 cut(s) | 210, 690 |
| XspI | CTAG | 3 cut(s) | 176, 188, 1250 |
| ZraI | GACGTC | 1 cut(s) | 406 |