Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0000716

Physical Location & Seq

Genomic Coordinates Forward (+)

40590700 .. 40591059

Gene Structure 360 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG210800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGAATCACATCCTGGAAGTGGCATTTGTAGCGCCGTTCGGAGCATCCTTCAACGCAAAGGACATTGCTTATTCACGGGCCGGACCGGTTGTGCCTCCGATTGATCTTGTGTTGCAGAGCGAGAGCGTGTACTGGAGGATTATTGGAGCAAATTCGATGGTGAGTGTGAGCAATGAGGTGTTGTGTTTAGGGTTTGTGGATGGCGGTCTGAATCCGAGGACTTCTATTGTGATCGGAGGGCATCAGATTGAGGACAATTTATTGCAGTTTAATTTGGCTGCTAATAGGCTTGGATTCAGCTCTTCACTCTTGTCCCGACAAATCAGCTGCGCCAACTTTAACTTTACATCCACTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

119

Amino Acids

12.76

Weight (kDa)

5.47

Isoelectric Point (pI)

46.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	6 - 100	4.2e-31	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03220 AT1G03230
fragaria_vesca	FvH4_2g23780 FvH4_4g14611 FvH4_4g14611 FvH4_4g14640 FvH4_4g14660 FvH4_4g14670
malus_domestica	MD11G1287900.v1.1 MD13G1184500.v1.1 MD13G1184800.v1.1 MD13G1184900.v1.1 MD16G1185000.v1.1 MD16G1185100.v1.1 MD16G1185300.v1.1
prunus_persica	Prupe.1G152100_v2.0.a1 Prupe.1G152200_v2.0.a1 Prupe.8G243100_v2.0.a1
pyrus_communis	pycom11g25550 pycom13g15900 pycom13g15920 pycom16g15520
rosa_chinensis	RchiOBHm_Chr4g0417891 RchiOBHm_Chr4g0417921 RchiOBHm_Chr4g0417961 RchiOBHm_Chr4g0417971 RchiOBHm_Chr4g0417981 RchiOBHm_Chr6g0291301
rosa_laevigata	RLG00000007886 RLG00000007887 RLG00000007888 RLG00000007889 RLG00000007890 RLG00000012125
rosa_multiflora	Rmu_co8285195.1_g000001 Rmu_sc0000032.1_g000028
rosa_roxburghii	Rroxscaffold_160G00433800 Rroxscaffold_4G00327990 Rroxscaffold_5G00361320 Rroxscaffold_5G00361330 Rroxscaffold_5G00361340 Rroxscaffold_5G00361370 Rroxscaffold_5G00361380
rosa_rugosa	Rorug04G0150200 Rorug04G0150300 Rorug04G0150900 Rorug04G0151100 Rorug06G0218600
rosa_samantha	Rh4AG212500 Rh4AG212600 Rh4BG218100 Rh4BG218200 Rh4BG218300 Rh4BG218400 Rh4BG218500 Rh4CG223500 Rh4CG224100 Rh4CG224200 Rh4CG224500 Rh4DG210500 Rh4DG210800 Rh4DG211000 Rh4DG211100 Rh6AG330600 Rh6BG337500 Rh6BG337600 Rh6CG343900 Rh6DG330900
rosa_wichuraiana	Rw4G018040 Rw4G018050 Rw4G018060 Rw4G018070 Rw6G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	204
AcsI	RAATTY	1 cut(s)	151
AfaI	GTAC	1 cut(s)	131
AfiI	CCNNNNNNNGG	1 cut(s)	19
AgeI	ACCGGT	1 cut(s)	85
AgsI	TTSAA	1 cut(s)	52
AjnI	CCWGG	1 cut(s)	12
AluBI	AGCT	2 cut(s)	300, 327
AluI	AGCT	2 cut(s)	300, 327
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	2 cut(s)	278, 327
ApoI	RAATTY	1 cut(s)	151
AsiGI	ACCGGT	1 cut(s)	85
AspLEI	GCGC	2 cut(s)	34, 332
AspS9I	GGNCC	2 cut(s)	78, 83
AsuHPI	GGTGA	1 cut(s)	172
AvaII	GGWCC	1 cut(s)	83
BbvI	GCAGC	2 cut(s)	265, 314
BccI	CCATC	2 cut(s)	151, 194
BceAI	ACGGC	1 cut(s)	19
BciT130I	CCWGG	1 cut(s)	14
BfoI	RGCGCY	1 cut(s)	35
BisI	GCNGC	2 cut(s)	279, 328
BlsI	GCNGC	2 cut(s)	280, 329
Bme1390I	CCNGG	1 cut(s)	14
Bme18I	GGWCC	1 cut(s)	83
BmgT120I	GGNCC	2 cut(s)	78, 83
BmrFI	CCNGG	1 cut(s)	14
BmsI	GCATC	2 cut(s)	53, 250
BpmI	CTGGAG	1 cut(s)	154
BsaJI	CCNNGG	1 cut(s)	215
BsaWI	WCCGGW	1 cut(s)	85
Bsc4I	CCNNNNNNNGG	1 cut(s)	19
Bse118I	RCCGGY	1 cut(s)	85
Bse1I	ACTGG	1 cut(s)	137
Bse3DI	GCAATG	2 cut(s)	63, 178
BseBI	CCWGG	1 cut(s)	14
BseDI	CCNNGG	1 cut(s)	215
BseGI	GGATG	4 cut(s)	9, 44, 205, 347
BseLI	CCNNNNNNNGG	1 cut(s)	19
BseMI	GCAATG	2 cut(s)	63, 178
BseNI	ACTGG	1 cut(s)	137
BseXI	GCAGC	2 cut(s)	265, 314
BshFI	GGCC	1 cut(s)	80
BshTI	ACCGGT	1 cut(s)	85
BsiSI	CCGG	2 cut(s)	81, 86
BslFI	GGGAC	1 cut(s)	298
BslI	CCNNNNNNNGG	1 cut(s)	19
BsmFI	GGGAC	1 cut(s)	298
BsnI	GGCC	1 cut(s)	80
Bsp143I	GATC	2 cut(s)	103, 231
BspACI	CCGC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	80
BspQI	GCTCTTC	1 cut(s)	307
BsrDI	GCAATG	2 cut(s)	63, 178
BsrFI	RCCGGY	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	85
BssECI	CCNNGG	1 cut(s)	215
BssMI	GATC	2 cut(s)	103, 231
Bst2UI	CCWGG	1 cut(s)	14
Bst6I	CTCTTC	1 cut(s)	307
BstF5I	GGATG	4 cut(s)	9, 44, 205, 347
BstH2I	RGCGCY	1 cut(s)	35
BstHHI	GCGC	2 cut(s)	34, 332
BstKTI	GATC	2 cut(s)	106, 234
BstMBI	GATC	2 cut(s)	103, 231
BstMWI	GCNNNNNNNGC	1 cut(s)	29
BstNI	CCWGG	1 cut(s)	14
BstSCI	CCNGG	1 cut(s)	12
BstV1I	GCAGC	2 cut(s)	265, 314
BsuRI	GGCC	1 cut(s)	80
BtsCI	GGATG	4 cut(s)	9, 44, 205, 347
BtsI	GCAGTG	1 cut(s)	351
BtsIMutI	CAGTG	1 cut(s)	351
CfoI	GCGC	2 cut(s)	34, 332
Cfr10I	RCCGGY	1 cut(s)	85
Cfr13I	GGNCC	2 cut(s)	78, 83
CpoI	CGGWCCG	1 cut(s)	83
Csp6I	GTAC	1 cut(s)	130
CspAI	ACCGGT	1 cut(s)	85
CspI	CGGWCCG	1 cut(s)	83
CviJI	RGCY	5 cut(s)	80, 278, 289, 300, 327
CviKI_1	RGCY	5 cut(s)	80, 278, 289, 300, 327
CviQI	GTAC	1 cut(s)	130
DpnI	GATC	2 cut(s)	105, 233
DpnII	GATC	2 cut(s)	103, 231
Eam1104I	CTCTTC	1 cut(s)	307
EarI	CTCTTC	1 cut(s)	307
Eco47I	GGWCC	1 cut(s)	83
EcoRII	CCWGG	1 cut(s)	12
FaqI	GGGAC	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	279, 328
FokI	GGATG	3 cut(s)	31, 212, 334
Fsp4HI	GCNGC	2 cut(s)	279, 328
GlaI	GCGC	2 cut(s)	33, 331
GluI	GCNGC	2 cut(s)	279, 328
GsuI	CTGGAG	1 cut(s)	154
HaeII	RGCGCY	1 cut(s)	35
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	2 cut(s)	81, 86
HhaI	GCGC	2 cut(s)	34, 332
Hin6I	GCGC	2 cut(s)	32, 330
HinP1I	GCGC	2 cut(s)	32, 330
HinfI	GANTC	3 cut(s)	4, 211, 294
HpaII	CCGG	2 cut(s)	81, 86
HphI	GGTGA	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	130
Hpy188I	TCNGA	6 cut(s)	41, 99, 210, 216, 236, 246
Hpy188III	TCNNGA	1 cut(s)	315
Hpy8I	GTNNAC	1 cut(s)	130
HpyAV	CCTTC	1 cut(s)	58
HpyCH4V	TGCA	2 cut(s)	115, 265
HpyF10VI	GCNNNNNNNGC	1 cut(s)	29
HspAI	GCGC	2 cut(s)	32, 330
Kzo9I	GATC	2 cut(s)	103, 231
LguI	GCTCTTC	1 cut(s)	307
LmnI	GCTCC	2 cut(s)	41, 146
LpnPI	CCDG	4 cut(s)	26, 94, 99, 118
Lsp1109I	GCAGC	2 cut(s)	265, 314
LweI	GCATC	2 cut(s)	53, 250
MalI	GATC	2 cut(s)	105, 233
MboI	GATC	2 cut(s)	103, 231
MboII	GAAGA	1 cut(s)	294
MluCI	AATT	3 cut(s)	151, 256, 271
MnlI	CCTC	6 cut(s)	105, 129, 169, 210, 230, 244
MseI	TTAA	2 cut(s)	270, 339
MspA1I	CMGCKG	1 cut(s)	327
MspI	CCGG	2 cut(s)	81, 86
MspR9I	CCNGG	1 cut(s)	14
MvaI	CCWGG	1 cut(s)	14
MwoI	GCNNNNNNNGC	1 cut(s)	29
NdeII	GATC	2 cut(s)	103, 231
PciSI	GCTCTTC	1 cut(s)	307
PfeI	GAWTC	3 cut(s)	4, 211, 294
PfoI	TCCNGGA	1 cut(s)	12
PinAI	ACCGGT	1 cut(s)	85
PkrI	GCNGC	2 cut(s)	280, 329
Psp6I	CCWGG	1 cut(s)	12
PspGI	CCWGG	1 cut(s)	12
PspPI	GGNCC	2 cut(s)	78, 83
PvuII	CAGCTG	1 cut(s)	327
RsaI	GTAC	1 cut(s)	131
RsaNI	GTAC	1 cut(s)	130
Rsr2I	CGGWCCG	1 cut(s)	83
RsrII	CGGWCCG	1 cut(s)	83
SapI	GCTCTTC	1 cut(s)	307
SaqAI	TTAA	2 cut(s)	270, 339
SatI	GCNGC	2 cut(s)	279, 328
Sau3AI	GATC	2 cut(s)	103, 231
Sau96I	GGNCC	2 cut(s)	78, 83
ScrFI	CCNGG	1 cut(s)	14
SetI	ASST	3 cut(s)	180, 302, 329
SfaNI	GCATC	2 cut(s)	53, 250
SinI	GGWCC	1 cut(s)	83
Sse9I	AATT	3 cut(s)	151, 256, 271
SsiI	CCGC	1 cut(s)	204
StyD4I	CCNGG	1 cut(s)	12
TaqI	TCGA	1 cut(s)	155
TasI	AATT	3 cut(s)	151, 256, 271
TatI	WGTACW	1 cut(s)	129
TfiI	GAWTC	3 cut(s)	4, 211, 294
Tru1I	TTAA	2 cut(s)	270, 339
Tru9I	TTAA	2 cut(s)	270, 339
TscAI	CASTG	1 cut(s)	358
TseI	GCWGC	2 cut(s)	278, 327
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	358
VpaK11BI	GGWCC	1 cut(s)	83
XapI	RAATTY	1 cut(s)	151

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.