RchiOBHm_Chr4g0417921

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000716
Physical Location & Seq
Reverse (-)
43226836 .. 43227486
651 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38796

Sequence Viewer

Length: 651 bp
ATGCTTCCCGGTATTGATGTATCTAAGTCTCTAATCTACACACCGTTGATCGTCGACCCTGTAACTACTGGGGCTAATTATGAAGAAGGCGAGCCTTCCTCAGAATATTTCATCAACGTAACGTCAATCAAGATCAACGGAAAGGTTGTTTCCGGATTCAACACTTCCTTGCTGACAATCGACAAAGATGGGTATGGAGGCACAAAGATTAGCAGCGTCAATCCTTACACAGTCATGGAGACCTCGATCTACAACGCTTTCGTTGATCTCTTTACTAAAGAACTCTCTGGAGTGCCAAGAGTGACACCCGTAGAACCATTCGGAGTGTGCTTCAACTCAACCAATCTCGGTAGTACTCGGGTTGACCCGCCGGTGCCTACCATTGATCTGGTGTTGCAGAGCGAGAGCGTGTACTGGAGGATCTTTGGGGCAAACTCGATGGTGCAGGTGAGCCAGGACGTGCTGTGCTTAGGGTTTGTGGATAACGGTCAGAGCCCGAGTAACCCTAGAACTAATATTGTGATTGGTGCGCATCAAATTGAGGATAATCTTCTTCAGTTTGATTTGGCTTCTTCTAGGCTGGGATTCAGCTCCTCTCTCTTGTTCCGACAGACCACTTGCTCTAACTTCAACTTCACTTCTGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

216

Amino Acids

23.43

Weight (kDa)

4.52

Isoelectric Point (pI)

29.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 35 - 197 1.8e-59 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 436
Acc16I TGCGCA 1 cut(s) 531
Acc36I ACCTGC 1 cut(s) 436
AccB1I GGYRCC 1 cut(s) 373
AccI GTMKAC 1 cut(s) 54
AccIII TCCGGA 1 cut(s) 152
AciI CCGC 1 cut(s) 368
AclWI GGATC 1 cut(s) 428
AcuI CTGAAG 1 cut(s) 539
AfaI GTAC 2 cut(s) 355, 413
AgsI TTSAA 3 cut(s) 160, 334, 631
AjiI CACGTC 1 cut(s) 460
AjnI CCWGG 1 cut(s) 453
AluBI AGCT 1 cut(s) 591
AluI AGCT 1 cut(s) 591
Alw26I GTCTC 2 cut(s) 33, 233
AlwI GGATC 1 cut(s) 428
Ama87I CYCGRG 2 cut(s) 357, 496
Aor13HI TCCGGA 1 cut(s) 152
ApeKI GCWGC 1 cut(s) 213
AspLEI GCGC 1 cut(s) 532
AsuC2I CCSGG 1 cut(s) 9
AsuHPI GGTGA 1 cut(s) 460
AvaI CYCGRG 2 cut(s) 357, 496
BanI GGYRCC 1 cut(s) 373
BanII GRGCYC 1 cut(s) 497
BbvI GCAGC 1 cut(s) 225
BccI CCATC 2 cut(s) 182, 433
BciT130I CCWGG 1 cut(s) 455
BcnI CCSGG 1 cut(s) 9
BcoDI GTCTC 2 cut(s) 33, 233
BfaI CTAG 2 cut(s) 507, 576
BfuAI ACCTGC 1 cut(s) 436
BisI GCNGC 1 cut(s) 214
BlsI GCNGC 1 cut(s) 215
BmcAI AGTACT 1 cut(s) 355
Bme1390I CCNGG 2 cut(s) 9, 455
BmeT110I CYCGRG 2 cut(s) 357, 496
BmgBI CACGTC 1 cut(s) 460
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 2 cut(s) 9, 455
BmrI ACTGGG 1 cut(s) 78
BmsI GCATC 1 cut(s) 541
BmuI ACTGGG 1 cut(s) 78
BplI GAGNNNNNCTC 2 cut(s) 83, 115
BpmI CTGGAG 2 cut(s) 309, 436
Bpu10I CCTNAGC 1 cut(s) 469
BpuMI CCSGG 1 cut(s) 9
BsaI GGTCTC 1 cut(s) 233
BsaWI WCCGGW 1 cut(s) 152
Bse118I RCCGGY 1 cut(s) 370
Bse1I ACTGG 2 cut(s) 73, 419
BseAI TCCGGA 1 cut(s) 152
BseBI CCWGG 1 cut(s) 455
BseMII CTCAG 1 cut(s) 114
BseNI ACTGG 2 cut(s) 73, 419
BseRI GAGGAG 1 cut(s) 583
BseXI GCAGC 1 cut(s) 225
BseYI CCCAGC 1 cut(s) 580
BsgI GTGCAG 1 cut(s) 464
BshNI GGYRCC 1 cut(s) 373
BsiHKCI CYCGRG 2 cut(s) 357, 496
BsiSI CCGG 3 cut(s) 9, 153, 371
BsmAI GTCTC 2 cut(s) 33, 233
Bso31I GGTCTC 1 cut(s) 233
BsoBI CYCGRG 2 cut(s) 357, 496
Bsp1286I GDGCHC 1 cut(s) 497
Bsp13I TCCGGA 1 cut(s) 152
Bsp143I GATC 6 cut(s) 48, 132, 246, 265, 385, 420
BspACI CCGC 1 cut(s) 368
BspCNI CTCAG 1 cut(s) 113
BspEI TCCGGA 1 cut(s) 152
BspLI GGNNCC 1 cut(s) 375
BspMI ACCTGC 1 cut(s) 436
BspPI GGATC 1 cut(s) 428
BspT107I GGYRCC 1 cut(s) 373
BspTNI GGTCTC 1 cut(s) 233
BsrFI RCCGGY 1 cut(s) 370
BsrI ACTGG 2 cut(s) 73, 419
BssAI RCCGGY 1 cut(s) 370
BssMI GATC 6 cut(s) 48, 132, 246, 265, 385, 420
Bst2UI CCWGG 1 cut(s) 455
Bst4CI ACNGT 3 cut(s) 45, 232, 488
BstC8I GCNNGC 1 cut(s) 92
BstDEI CTNAG 4 cut(s) 24, 100, 469, 648
BstHHI GCGC 1 cut(s) 532
BstKTI GATC 6 cut(s) 51, 135, 249, 268, 388, 423
BstMAI GTCTC 2 cut(s) 33, 233
BstMBI GATC 6 cut(s) 48, 132, 246, 265, 385, 420
BstNI CCWGG 1 cut(s) 455
BstSCI CCNGG 2 cut(s) 7, 453
BstV1I GCAGC 1 cut(s) 225
BstX2I RGATCY 1 cut(s) 420
BstXI CCANNNNNNTGG 1 cut(s) 388
BstYI RGATCY 1 cut(s) 420
BtrI CACGTC 1 cut(s) 460
BveI ACCTGC 1 cut(s) 436
Cac8I GCNNGC 1 cut(s) 92
CfoI GCGC 1 cut(s) 532
Cfr10I RCCGGY 1 cut(s) 370
CseI GACGC 1 cut(s) 205
Csp6I GTAC 2 cut(s) 354, 412
CviAII CATG 1 cut(s) 235
CviJI RGCY 7 cut(s) 74, 94, 453, 495, 569, 580, 591
CviKI_1 RGCY 7 cut(s) 74, 94, 453, 495, 569, 580, 591
CviQI GTAC 2 cut(s) 354, 412
DdeI CTNAG 4 cut(s) 24, 100, 469, 648
DpnI GATC 6 cut(s) 50, 134, 248, 267, 387, 422
DpnII GATC 6 cut(s) 48, 132, 246, 265, 385, 420
Eco24I GRGCYC 1 cut(s) 497
Eco31I GGTCTC 1 cut(s) 233
Eco57I CTGAAG 1 cut(s) 539
Eco88I CYCGRG 2 cut(s) 357, 496
EcoRII CCWGG 1 cut(s) 453
EcoT38I GRGCYC 1 cut(s) 497
FaeI CATG 1 cut(s) 238
FaiI YATR 3 cut(s) 81, 195, 236
FatI CATG 1 cut(s) 234
FauI CCCGC 1 cut(s) 375
FblI GTMKAC 1 cut(s) 54
Fnu4HI GCNGC 1 cut(s) 214
FriOI GRGCYC 1 cut(s) 497
Fsp4HI GCNGC 1 cut(s) 214
FspAI RTGCGCAY 1 cut(s) 531
FspBI CTAG 2 cut(s) 507, 576
FspI TGCGCA 1 cut(s) 531
GlaI GCGC 1 cut(s) 531
GluI GCNGC 1 cut(s) 214
GsaI CCCAGC 1 cut(s) 584
GsuI CTGGAG 2 cut(s) 309, 436
HapII CCGG 3 cut(s) 9, 153, 371
HgaI GACGC 1 cut(s) 205
HhaI GCGC 1 cut(s) 532
Hin1II CATG 1 cut(s) 238
Hin6I GCGC 1 cut(s) 530
HinP1I GCGC 1 cut(s) 530
HincII GTYRAC 2 cut(s) 55, 364
HindII GTYRAC 2 cut(s) 55, 364
HinfI GANTC 2 cut(s) 156, 585
HpaII CCGG 3 cut(s) 9, 153, 371
HphI GGTGA 1 cut(s) 460
Hpy166II GTNNAC 3 cut(s) 55, 364, 412
Hpy188I TCNGA 4 cut(s) 103, 323, 492, 608
Hpy188III TCNNGA 3 cut(s) 130, 153, 288
Hpy8I GTNNAC 3 cut(s) 55, 364, 412
Hpy99I CGWCG 1 cut(s) 56
HpyAV CCTTC 2 cut(s) 80, 105
HpyCH4III ACNGT 3 cut(s) 45, 232, 488
HpyCH4IV ACGT 3 cut(s) 117, 122, 459
HpyCH4V TGCA 2 cut(s) 397, 445
HpyF3I CTNAG 4 cut(s) 24, 100, 469, 648
HpySE526I ACGT 3 cut(s) 117, 122, 459
Hsp92II CATG 1 cut(s) 238
HspAI GCGC 1 cut(s) 530
Kpn2I TCCGGA 1 cut(s) 152
Kzo9I GATC 6 cut(s) 48, 132, 246, 265, 385, 420
LmnI GCTCC 1 cut(s) 596
Lsp1109I GCAGC 1 cut(s) 225
LweI GCATC 1 cut(s) 541
MaeI CTAG 2 cut(s) 507, 576
MaeII ACGT 3 cut(s) 117, 122, 459
MaeIII GTNAC 4 cut(s) 61, 118, 301, 500
MalI GATC 6 cut(s) 50, 134, 248, 267, 387, 422
MboI GATC 6 cut(s) 48, 132, 246, 265, 385, 420
MboII GAAGA 4 cut(s) 95, 542, 545, 564
MflI RGATCY 1 cut(s) 420
MhlI GDGCHC 1 cut(s) 497
MluCI AATT 2 cut(s) 76, 537
MmeI TCCRAC 1 cut(s) 631
MnlI CCTC 6 cut(s) 109, 191, 253, 411, 535, 604
MroI TCCGGA 1 cut(s) 152
MslI CAYNNNNRTG 1 cut(s) 233
MspI CCGG 3 cut(s) 9, 153, 371
MspR9I CCNGG 2 cut(s) 9, 455
MvaI CCWGG 1 cut(s) 455
NciI CCSGG 1 cut(s) 9
NdeII GATC 6 cut(s) 48, 132, 246, 265, 385, 420
NlaIII CATG 1 cut(s) 238
NlaIV GGNNCC 1 cut(s) 375
NmuCI GTSAC 1 cut(s) 301
NsbI TGCGCA 1 cut(s) 531
PaqCI CACCTGC 1 cut(s) 436
PfeI GAWTC 2 cut(s) 156, 585
PkrI GCNGC 1 cut(s) 215
Psp6I CCWGG 1 cut(s) 453
PspFI CCCAGC 1 cut(s) 580
PspGI CCWGG 1 cut(s) 453
PspN4I GGNNCC 1 cut(s) 375
PsuI RGATCY 1 cut(s) 420
RsaI GTAC 2 cut(s) 355, 413
RsaNI GTAC 2 cut(s) 354, 412
RseI CAYNNNNRTG 1 cut(s) 233
SalI GTCGAC 1 cut(s) 53
SatI GCNGC 1 cut(s) 214
Sau3AI GATC 6 cut(s) 48, 132, 246, 265, 385, 420
ScaI AGTACT 1 cut(s) 355
ScrFI CCNGG 2 cut(s) 9, 455
SduI GDGCHC 1 cut(s) 497
SetI ASST 7 cut(s) 120, 125, 147, 245, 450, 462, 593
SfaNI GCATC 1 cut(s) 541
SgrAI CRCCGGYG 1 cut(s) 370
SmiMI CAYNNNNRTG 1 cut(s) 233
Sse9I AATT 2 cut(s) 76, 537
SsiI CCGC 1 cut(s) 368
SspI AATATT 2 cut(s) 107, 517
SspMI CTAG 2 cut(s) 507, 576
StyD4I CCNGG 2 cut(s) 7, 453
TaaI ACNGT 3 cut(s) 45, 232, 488
TaiI ACGT 3 cut(s) 120, 125, 462
TaqI TCGA 4 cut(s) 54, 180, 245, 437
TasI AATT 2 cut(s) 76, 537
TatI WGTACW 2 cut(s) 353, 411
TfiI GAWTC 2 cut(s) 156, 585
TseFI GTSAC 1 cut(s) 301
TseI GCWGC 1 cut(s) 213
Tsp45I GTSAC 1 cut(s) 301
TspDTI ATGAA 2 cut(s) 96, 100
TspGWI ACGGA 1 cut(s) 153
XmiI GTMKAC 1 cut(s) 54
XspI CTAG 2 cut(s) 507, 576
ZrmI AGTACT 1 cut(s) 355
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.