RchiOBHm_Chr4g0417971

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000716
Physical Location & Seq
Reverse (-)
43277522 .. 43279804
2283 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38800

Sequence Viewer

Length: 1320 bp
ATGGCTTCCTCTTCATTTCAGTGCCTTATTCTTCTTTGCTCACTAGCTTTCTTCTTCTTCGCCACTCCCTCACTAGCCAAAACATCTTTCAAACCCAAAGCCCTAGTTCTTCCCGTAACTAAAGACCCTTCTACCCGCCAATACCTCACCACCATCAACCAAAGAACGCCTCTAGTCCCTGCTAAACTGACCATTGACCTCGGCGGTCAATCACTTTGGGTAGATTGTGAGGGAGGCTATGTCTCCTCCACCTACAAGCCTGCCCATTGTGGATCCTCGCAGTGCAAACTCGCCGGGTCCAAGGCGTGTACCACAGAGTGCTACTCATCCCCAAAACCAGGTTGCTACAACAACACGTGTAACATCTCCCCAGACAACCCTCTCGCCACCATACTCACCGGGAACGGTCAACTGGGTCAAGACGTAGTTTCCCTTCAATCCACAGATGGGTCTAATCCAGGTCTGGTTGTTTCTACTCCAAACATCCTCTTCAGTTGTGGTGACACTTCTCTCTTGGCAAACCTTTCCGCCGGTGTTAAGGGCATGGCTGGCCTTGGCAGGCCTAAAGTCGGACTTCCTTCCCAGTTTGCATATGCTTTTAGCTTCAACAGGAAATTCGCCATTTGCCTGACCTCTTCAACAAAATCACAAGGTGTCATATTTTTCGGTGACAGTCCTTATGTTTTCCTTCCCGGCGTTGATGTCTTGAAGTCGCTTATGTTCACCAAATTGATCCTCAACCCGGTAAGCACGGCTGGTGGTTATTTCGCAGGCGATGCTTCTTCAGAATACTTCATTGGAGTAAAGTCCATCAAGGTCAACGAAAAAGTTGTTCCATTTAATACTACATTGCTAGCCATTGACCAAGAAGGGTATGGTGGCACAAGAATTAGCACTCTGAAGCCTTACACGGTTTTGGAGACTTCGATCTATAAGGCTGTCGTGAATGCGTTTGTGAAATCACTCGCTCACATACCAAGATTGAAATCCGTCGCGCCTTTCGGAGCGTGCTACAACTCAAAGAGGATTGGCAGCACACGTGTCGGCCCGAGTGTGCCTGCAATTGACCTTGTGTTGAGCAAGGGAGTGTACTGGAGGGTGTTCGGAGCAAACTCGATGGTGAAGGTGGGCAAGGACGTGTTGTGTTTGGCATTTGTGGATGGCGGTGTAAGGCCAAGGACTTCTATTGTGATTGGAGGGCATCAAATCGAGGACAATCTTCTTCAATTTGATTTGACTAACAAGAGGCTCGGATTCAGCTCCTCCTTGTTGTTCCGACAAACAAACTGTACCAACTTTAACTTCACTTCCACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

439

Amino Acids

46.84

Weight (kDa)

9.29

Isoelectric Point (pI)

38.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 48 - 224 2.6e-44 Xylanase inhibitor N-terminal
TAXi_C PF14541 263 - 420 4.6e-61 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 995
AciI CCGC 4 cut(s) 136, 204, 528, 1164
AclWI GGATC 3 cut(s) 267, 280, 727
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 3 cut(s) 475, 768, 920
AcvI CACGTG 2 cut(s) 357, 1040
AdeI CACNNNGTG 2 cut(s) 318, 653
AfaI GTAC 3 cut(s) 310, 1091, 1291
AfiI CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
AflIII ACRYGT 5 cut(s) 354, 356, 1037, 1039, 1137
AgsI TTSAA 7 cut(s) 91, 437, 607, 639, 709, 985, 1226
AjiI CACGTC 1 cut(s) 1138
AjnI CCWGG 2 cut(s) 337, 457
AjuI GAANNNNNNNTTGG 6 cut(s) 71, 103, 780, 812, 1286, 1318
AluBI AGCT 3 cut(s) 47, 603, 1260
AluI AGCT 3 cut(s) 47, 603, 1260
Alw26I GTCTC 2 cut(s) 247, 914
AlwI GGATC 3 cut(s) 267, 280, 727
Ama87I CYCGRG 1 cut(s) 1048
AoxI GGCC 4 cut(s) 550, 560, 1045, 1172
ApeKI GCWGC 1 cut(s) 1032
ApoI RAATTY 1 cut(s) 614
AspLEI GCGC 1 cut(s) 997
AspS9I GGNCC 2 cut(s) 297, 1046
AsuC2I CCSGG 4 cut(s) 295, 400, 693, 743
AsuHPI GGTGA 6 cut(s) 139, 388, 512, 680, 715, 1132
AsuNHI GCTAGC 1 cut(s) 853
AvaI CYCGRG 1 cut(s) 1048
AvaII GGWCC 1 cut(s) 297
BamHI GGATCC 1 cut(s) 272
BarI GAAGNNNNNNTAC 2 cut(s) 417, 449
BbrPI CACGTG 2 cut(s) 357, 1040
BbvI GCAGC 1 cut(s) 1044
BccI CCATC 5 cut(s) 161, 440, 818, 1111, 1154
BceAI ACGGC 1 cut(s) 768
BcgI CGANNNNNNTGC 2 cut(s) 1024, 1058
BciT130I CCWGG 2 cut(s) 339, 459
BcnI CCSGG 4 cut(s) 295, 400, 693, 743
BcoDI GTCTC 2 cut(s) 247, 914
BfaI CTAG 5 cut(s) 44, 74, 104, 173, 854
BisI GCNGC 1 cut(s) 1033
BlsI GCNGC 1 cut(s) 1034
Bme1390I CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
Bme18I GGWCC 1 cut(s) 297
BmeT110I CYCGRG 1 cut(s) 1048
BmgBI CACGTC 1 cut(s) 1138
BmgT120I GGNCC 2 cut(s) 297, 1046
BmiI GGNNCC 2 cut(s) 274, 298
BmrFI CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
BmrI ACTGGG 2 cut(s) 422, 577
BmsI GCATC 2 cut(s) 766, 1210
BmtI GCTAGC 1 cut(s) 857
BmuI ACTGGG 2 cut(s) 422, 577
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpmI CTGGAG 1 cut(s) 1114
BpuMI CCSGG 4 cut(s) 295, 400, 693, 743
BsaAI YACGTR 2 cut(s) 357, 1040
BsaBI GATNNNNATC 1 cut(s) 985
BsaJI CCNNGG 4 cut(s) 199, 300, 553, 1175
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 3 cut(s) 417, 583, 1097
Bse3DI GCAATG 1 cut(s) 848
Bse8I GATNNNNATC 1 cut(s) 985
BseBI CCWGG 2 cut(s) 339, 459
BseDI CCNNGG 4 cut(s) 199, 300, 553, 1175
BseGI GGATG 3 cut(s) 326, 483, 1165
BseJI GATNNNNATC 1 cut(s) 985
BseLI CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
BseMI GCAATG 1 cut(s) 848
BseNI ACTGG 3 cut(s) 417, 583, 1097
BseRI GAGGAG 2 cut(s) 235, 1252
BseXI GCAGC 1 cut(s) 1044
Bsh1236I CGCG 1 cut(s) 995
BshFI GGCC 4 cut(s) 552, 562, 1047, 1174
BsiHKCI CYCGRG 1 cut(s) 1048
BsiSI CCGG 5 cut(s) 294, 399, 531, 693, 743
BslFI GGGAC 1 cut(s) 161
BslI CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
BsmAI GTCTC 2 cut(s) 247, 914
BsmFI GGGAC 1 cut(s) 161
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 4 cut(s) 552, 562, 1047, 1174
BsoBI CYCGRG 1 cut(s) 1048
Bsp143I GATC 3 cut(s) 272, 732, 927
BspACI CCGC 4 cut(s) 136, 204, 528, 1164
BspANI GGCC 4 cut(s) 552, 562, 1047, 1174
BspFNI CGCG 1 cut(s) 995
BspLI GGNNCC 2 cut(s) 274, 298
BspOI GCTAGC 1 cut(s) 857
BspPI GGATC 3 cut(s) 267, 280, 727
BsrDI GCAATG 1 cut(s) 848
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 3 cut(s) 417, 583, 1097
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 4 cut(s) 199, 300, 553, 1175
BssMI GATC 3 cut(s) 272, 732, 927
BssT1I CCWWGG 3 cut(s) 300, 553, 1175
Bst2UI CCWGG 2 cut(s) 339, 459
Bst4CI ACNGT 4 cut(s) 407, 674, 913, 1289
Bst6I CTCTTC 3 cut(s) 16, 494, 640
BstAPI GCANNNNNTGC 1 cut(s) 776
BstBAI YACGTR 2 cut(s) 357, 1040
BstC8I GCNNGC 7 cut(s) 261, 550, 560, 772, 855, 1009, 1059
BstDEI CTNAG 1 cut(s) 1317
BstF5I GGATG 3 cut(s) 326, 483, 1165
BstFNI CGCG 1 cut(s) 995
BstHHI GCGC 1 cut(s) 997
BstKTI GATC 3 cut(s) 275, 735, 930
BstMAI GTCTC 2 cut(s) 247, 914
BstMBI GATC 3 cut(s) 272, 732, 927
BstMWI GCNNNNNNNGC 2 cut(s) 549, 776
BstNI CCWGG 2 cut(s) 339, 459
BstSCI CCNGG 6 cut(s) 293, 337, 398, 457, 691, 741
BstUI CGCG 1 cut(s) 995
BstV1I GCAGC 1 cut(s) 1044
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
BsuRI GGCC 4 cut(s) 552, 562, 1047, 1174
BtgZI GCGATG 1 cut(s) 789
BtrI CACGTC 1 cut(s) 1138
BtsCI GGATG 3 cut(s) 326, 483, 1165
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 2 cut(s) 26, 287
Cac8I GCNNGC 7 cut(s) 261, 550, 560, 772, 855, 1009, 1059
CfoI GCGC 1 cut(s) 997
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 2 cut(s) 297, 1046
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 3 cut(s) 309, 1090, 1290
CviAII CATG 1 cut(s) 544
CviQI GTAC 3 cut(s) 309, 1090, 1290
DdeI CTNAG 1 cut(s) 1317
DpnI GATC 3 cut(s) 274, 734, 929
DpnII GATC 3 cut(s) 272, 732, 927
DraIII CACNNNGTG 2 cut(s) 318, 653
Eam1104I CTCTTC 3 cut(s) 16, 494, 640
EarI CTCTTC 3 cut(s) 16, 494, 640
EciI GGCGGA 1 cut(s) 517
Eco130I CCWWGG 3 cut(s) 300, 553, 1175
Eco147I AGGCCT 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 297
Eco57I CTGAAG 3 cut(s) 475, 768, 920
Eco72I CACGTG 2 cut(s) 357, 1040
Eco88I CYCGRG 1 cut(s) 1048
EcoRII CCWGG 2 cut(s) 337, 457
EcoT14I CCWWGG 3 cut(s) 300, 553, 1175
ErhI CCWWGG 3 cut(s) 300, 553, 1175
FaeI CATG 1 cut(s) 547
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 1 cut(s) 161
FatI CATG 1 cut(s) 543
FauI CCCGC 1 cut(s) 143
FauNDI CATATG 1 cut(s) 592
Fnu4HI GCNGC 1 cut(s) 1033
FokI GGATG 3 cut(s) 313, 470, 1172
Fsp4HI GCNGC 1 cut(s) 1033
FspBI CTAG 5 cut(s) 44, 74, 104, 173, 854
GlaI GCGC 1 cut(s) 996
GluI GCNGC 1 cut(s) 1033
GsuI CTGGAG 1 cut(s) 1114
HaeIII GGCC 4 cut(s) 552, 562, 1047, 1174
HapII CCGG 5 cut(s) 294, 399, 531, 693, 743
HhaI GCGC 1 cut(s) 997
Hin1II CATG 1 cut(s) 547
Hin6I GCGC 1 cut(s) 995
HinP1I GCGC 1 cut(s) 995
HincII GTYRAC 2 cut(s) 410, 820
HindII GTYRAC 2 cut(s) 410, 820
HinfI GANTC 1 cut(s) 1254
HpaII CCGG 5 cut(s) 294, 399, 531, 693, 743
HphI GGTGA 6 cut(s) 139, 388, 512, 680, 715, 1132
Hpy166II GTNNAC 5 cut(s) 309, 410, 723, 820, 1090
Hpy188I TCNGA 7 cut(s) 572, 787, 900, 1004, 1106, 1253, 1277
Hpy188III TCNNGA 3 cut(s) 419, 706, 943
Hpy8I GTNNAC 5 cut(s) 309, 410, 723, 820, 1090
Hpy99I CGWCG 1 cut(s) 995
HpyAV CCTTC 6 cut(s) 138, 443, 588, 698, 863, 1117
HpyCH4III ACNGT 4 cut(s) 407, 674, 913, 1289
HpyCH4IV ACGT 4 cut(s) 356, 423, 1039, 1137
HpyCH4V TGCA 3 cut(s) 285, 590, 1061
HpyF10VI GCNNNNNNNGC 2 cut(s) 549, 776
HpyF3I CTNAG 1 cut(s) 1317
HpySE526I ACGT 4 cut(s) 356, 423, 1039, 1137
Hsp92II CATG 1 cut(s) 547
HspAI GCGC 1 cut(s) 995
Kzo9I GATC 3 cut(s) 272, 732, 927
LmnI GCTCC 3 cut(s) 1004, 1106, 1265
Lsp1109I GCAGC 1 cut(s) 1044
LweI GCATC 2 cut(s) 766, 1210
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 5 cut(s) 44, 74, 104, 173, 854
MaeII ACGT 4 cut(s) 356, 423, 1039, 1137
MaeIII GTNAC 4 cut(s) 115, 359, 500, 668
MalI GATC 3 cut(s) 274, 734, 929
MboI GATC 3 cut(s) 272, 732, 927
MfeI CAATTG 1 cut(s) 1062
MflI RGATCY 1 cut(s) 272
MluCI AATT 5 cut(s) 614, 728, 888, 1062, 1226
MmeI TCCRAC 2 cut(s) 550, 1300
MseI TTAA 3 cut(s) 537, 840, 1299
MslI CAYNNNNRTG 1 cut(s) 19
MspI CCGG 5 cut(s) 294, 399, 531, 693, 743
MspR9I CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
MunI CAATTG 1 cut(s) 1062
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 2 cut(s) 339, 459
MvnI CGCG 1 cut(s) 995
MwoI GCNNNNNNNGC 2 cut(s) 549, 776
NciI CCSGG 4 cut(s) 295, 400, 693, 743
NdeI CATATG 1 cut(s) 592
NdeII GATC 3 cut(s) 272, 732, 927
NheI GCTAGC 1 cut(s) 853
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 2 cut(s) 274, 298
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 500, 668
PceI AGGCCT 1 cut(s) 562
PctI GAATGC 1 cut(s) 952
PfeI GAWTC 1 cut(s) 1254
PkrI GCNGC 1 cut(s) 1034
PmaCI CACGTG 2 cut(s) 357, 1040
PmlI CACGTG 2 cut(s) 357, 1040
Ppu21I YACGTR 2 cut(s) 357, 1040
Psp6I CCWGG 2 cut(s) 337, 457
PspCI CACGTG 2 cut(s) 357, 1040
PspGI CCWGG 2 cut(s) 337, 457
PspN4I GGNNCC 2 cut(s) 274, 298
PspPI GGNCC 2 cut(s) 297, 1046
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 3 cut(s) 310, 1091, 1291
RsaNI GTAC 3 cut(s) 309, 1090, 1290
RseI CAYNNNNRTG 1 cut(s) 19
SaqAI TTAA 3 cut(s) 537, 840, 1299
SatI GCNGC 1 cut(s) 1033
Sau3AI GATC 3 cut(s) 272, 732, 927
Sau96I GGNCC 2 cut(s) 297, 1046
ScrFI CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 2 cut(s) 766, 1210
SgrAI CRCCGGYG 1 cut(s) 530
SinI GGWCC 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 19
Sse9I AATT 5 cut(s) 614, 728, 888, 1062, 1226
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 4 cut(s) 136, 204, 528, 1164
SspMI CTAG 5 cut(s) 44, 74, 104, 173, 854
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 6 cut(s) 293, 337, 398, 457, 691, 741
StyI CCWWGG 3 cut(s) 300, 553, 1175
TaaI ACNGT 4 cut(s) 407, 674, 913, 1289
TaiI ACGT 4 cut(s) 359, 426, 1042, 1140
TaqI TCGA 3 cut(s) 926, 1115, 1209
TasI AATT 5 cut(s) 614, 728, 888, 1062, 1226
TatI WGTACW 1 cut(s) 1089
TfiI GAWTC 1 cut(s) 1254
Tru1I TTAA 3 cut(s) 537, 840, 1299
Tru9I TTAA 3 cut(s) 537, 840, 1299
TscAI CASTG 2 cut(s) 26, 287
TseFI GTSAC 2 cut(s) 500, 668
TseI GCWGC 1 cut(s) 1032
Tsp45I GTSAC 2 cut(s) 500, 668
TspDTI ATGAA 1 cut(s) 784
TspGWI ACGGA 1 cut(s) 979
TspRI CASTG 2 cut(s) 26, 287
VpaK11BI GGWCC 1 cut(s) 297
XapI RAATTY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 872
XspI CTAG 5 cut(s) 44, 74, 104, 173, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.