pycom16g15520

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr16
OG0000716
Physical Location & Seq
Reverse (-)
11474744 .. 11475978
1235 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom16g15520.1

Sequence Viewer

Length: 1137 bp
ATGGCTTCCTCCTCATTTCATTGCCTTCTCTTTTGCTCATCACTCTTCCACTTCTTCGTTGTCCCTTCACTTGCCAAAACTGCCTCTTTCAGACCAAAAGCCCTTGTTCTTCCGGTGGCAAAAGACTCCTCTACCTTCCAATACCTCACCACCTTCAGCCAAAGAACCCCTTTTGTAGCCATAAAACTCACAGTTGATCTTGGTGGTCGGTACCTTTGGGAGTGCTACTCTTCCCCTAAGCCAGGCTGCAACAACACATGTGCTCTCTCCCCCGGTAACACCATCACCCGCACCTCCACAAGCGGCGACCTTGGTCAAGACACTGTGTCCCTACAATCCACAGATGGGTCTAATCCAGGTAGGCTGGTCTCTGTCCCCAACCTACTCTTCACTTGCGGTCCCACATTTCTGTTGGAAGGCCTAGCGAGTGGTGTCAAGGGAATGGCTGGCCTCGGCAGGGATAAAATCGGGCTTCCCTCTCAATTTGCTTCCGCCTTTAGCCTCCCCCGAAAGTTTGCAATTTGTTTGAGCTCTTCATCGAAGTCTAGTGGCGTTGTGATCTTCGGGGACAGGCCTTATACTCTCTTTCCCAATATTGAGGTGTCCAAGTCACTTACTTTCACTCCATTGATCATCAACCCTGTCAGCACAGCCGGTGCTTATTTTCAAGGCGAGCCTTCGGTGGGGTACTTCATCAATGTGAAGTCGATTAAGGTCAATGGAAAGGTTGTTGCTTTGAATACTTCATTGCTGGCCATTGACAATGAAGGGTATGGCGGCACGAACATTAGTACGGTGAATCCGTACACGGTTTTGGAGACCTCAATCTACAACGCAGTTGTGAATGCATTTGTGAAAGAAGTTGCCTATAAAATCCCAAGAGTGAAAGCAGTAGCGCCTTTCAGAACATGCTTCAGTTCGAAGAACATCGGTGTTACAAGGGTTGGGCATTCTGTGCCTTCAATTGATCTCGTGTTGCAGAGCGAGAGTGTATATTGGACAATGTTCGGAGCAAATTCAATGGTGTATGTGAGCAATGATGTCTTGTGTTTAGGGTTTGCGGATGGAGGTGAGAGGCCAAGGACTTCTATTGTGATTGGAGGTAGTCTTCCTGGTATTATGATAGTCTATCAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

379

Amino Acids

40.32

Weight (kDa)

9.15

Isoelectric Point (pI)

34.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 76 - 190 3.8e-29 Xylanase inhibitor N-terminal
TAXi_C PF14541 230 - 369 3.3e-49 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 210
AccB1I GGYRCC 1 cut(s) 210
AciI CCGC 6 cut(s) 289, 303, 396, 492, 777, 1061
AcoI YGGCCR 1 cut(s) 753
AcsI RAATTY 1 cut(s) 1015
AcuI CTGAAG 2 cut(s) 139, 898
AfaI GTAC 4 cut(s) 212, 689, 793, 806
AfiI CCNNNNNNNGG 4 cut(s) 242, 345, 457, 683
AflIII ACRYGT 1 cut(s) 257
AgsI TTSAA 4 cut(s) 668, 739, 963, 1020
AhdI GACNNNNNGTC 1 cut(s) 325
AjnI CCWGG 3 cut(s) 241, 355, 1111
AjuI GAANNNNNNNTTGG 2 cut(s) 371, 403
AluBI AGCT 1 cut(s) 531
AluI AGCT 1 cut(s) 531
Alw21I GWGCWC 2 cut(s) 265, 533
Alw26I GTCTC 2 cut(s) 373, 812
AoxI GGCC 5 cut(s) 418, 448, 572, 753, 1076
ApeKI GCWGC 1 cut(s) 246
ApoI RAATTY 1 cut(s) 1015
Asp718I GGTACC 1 cut(s) 210
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 1 cut(s) 398
AsuC2I CCSGG 1 cut(s) 273
AsuHPI GGTGA 4 cut(s) 139, 277, 808, 1082
AsuII TTCGAA 1 cut(s) 920
AvaII GGWCC 1 cut(s) 398
BalI TGGCCA 1 cut(s) 755
BanI GGYRCC 1 cut(s) 210
BanII GRGCYC 1 cut(s) 533
BauI CACGAG 1 cut(s) 971
BbsI GAAGAC 1 cut(s) 1100
Bbv12I GWGCWC 2 cut(s) 265, 533
BbvI GCAGC 1 cut(s) 233
BccI CCATC 3 cut(s) 290, 338, 1058
BciT130I CCWGG 3 cut(s) 243, 357, 1113
BclI TGATCA 1 cut(s) 630
BcnI CCSGG 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 373, 812
BfaI CTAG 2 cut(s) 422, 546
BfoI RGCGCY 1 cut(s) 899
BisI GCNGC 3 cut(s) 247, 304, 778
BlsI GCNGC 3 cut(s) 248, 305, 779
Bme1390I CCNGG 4 cut(s) 243, 273, 357, 1113
Bme18I GGWCC 1 cut(s) 398
BmeRI GACNNNNNGTC 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 398
BmiI GGNNCC 2 cut(s) 212, 400
BmrFI CCNGG 4 cut(s) 243, 273, 357, 1113
BoxI GACNNNNGTC 1 cut(s) 312
BpiI GAAGAC 1 cut(s) 1100
BplI GAGNNNNNCTC 2 cut(s) 212, 244
Bpu10I CCTNAGC 1 cut(s) 237
Bpu14I TTCGAA 1 cut(s) 920
BpuMI CCSGG 1 cut(s) 273
BsaI GGTCTC 2 cut(s) 373, 812
BsaJI CCNNGG 4 cut(s) 271, 310, 451, 1079
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 607, 637
Bsc4I CCNNNNNNNGG 4 cut(s) 242, 345, 457, 683
Bse118I RCCGGY 1 cut(s) 653
Bse3DI GCAATG 3 cut(s) 19, 746, 1042
BseBI CCWGG 3 cut(s) 243, 357, 1113
BseDI CCNNGG 4 cut(s) 271, 310, 451, 1079
BseGI GGATG 1 cut(s) 1069
BseLI CCNNNNNNNGG 4 cut(s) 242, 345, 457, 683
BseMI GCAATG 3 cut(s) 19, 746, 1042
BseRI GAGGAG 1 cut(s) 118
BseXI GCAGC 1 cut(s) 233
BshFI GGCC 5 cut(s) 420, 450, 574, 755, 1078
BshNI GGYRCC 1 cut(s) 210
BsiHKAI GWGCWC 2 cut(s) 265, 533
BsiSI CCGG 3 cut(s) 113, 273, 654
BslFI GGGAC 5 cut(s) 47, 313, 359, 384, 581
BslI CCNNNNNNNGG 4 cut(s) 242, 345, 457, 683
BsmAI GTCTC 2 cut(s) 373, 812
BsmFI GGGAC 5 cut(s) 47, 313, 359, 384, 581
BsmI GAATGC 2 cut(s) 850, 949
BsnI GGCC 5 cut(s) 420, 450, 574, 755, 1078
Bso31I GGTCTC 2 cut(s) 373, 812
Bsp119I TTCGAA 1 cut(s) 920
Bsp1286I GDGCHC 2 cut(s) 265, 533
Bsp143I GATC 4 cut(s) 196, 558, 630, 967
BspACI CCGC 6 cut(s) 289, 303, 396, 492, 777, 1061
BspANI GGCC 5 cut(s) 420, 450, 574, 755, 1078
BspLI GGNNCC 2 cut(s) 212, 400
BspQI GCTCTTC 1 cut(s) 538
BspT104I TTCGAA 1 cut(s) 920
BspT107I GGYRCC 1 cut(s) 210
BspTNI GGTCTC 2 cut(s) 373, 812
BsrDI GCAATG 3 cut(s) 19, 746, 1042
BsrFI RCCGGY 1 cut(s) 653
BssAI RCCGGY 1 cut(s) 653
BssECI CCNNGG 4 cut(s) 271, 310, 451, 1079
BssMI GATC 4 cut(s) 196, 558, 630, 967
BssSI CACGAG 1 cut(s) 971
BssT1I CCWWGG 2 cut(s) 310, 1079
Bst2BI CACGAG 1 cut(s) 971
Bst2UI CCWGG 3 cut(s) 243, 357, 1113
Bst4CI ACNGT 4 cut(s) 193, 325, 796, 811
Bst6I CTCTTC 4 cut(s) 50, 235, 392, 538
BstAPI GCANNNNNTGC 1 cut(s) 955
BstBI TTCGAA 1 cut(s) 920
BstC8I GCNNGC 3 cut(s) 448, 674, 753
BstDEI CTNAG 1 cut(s) 237
BstENI CCTNNNNNAGG 1 cut(s) 240
BstF5I GGATG 1 cut(s) 1069
BstH2I RGCGCY 1 cut(s) 899
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 4 cut(s) 199, 561, 633, 970
BstMAI GTCTC 2 cut(s) 373, 812
BstMBI GATC 4 cut(s) 196, 558, 630, 967
BstMWI GCNNNNNNNGC 2 cut(s) 80, 955
BstNI CCWGG 3 cut(s) 243, 357, 1113
BstNSI RCATGY 2 cut(s) 261, 912
BstPAI GACNNNNGTC 1 cut(s) 312
BstSCI CCNGG 4 cut(s) 241, 271, 355, 1111
BstV1I GCAGC 1 cut(s) 233
BstV2I GAAGAC 1 cut(s) 1100
BsuRI GGCC 5 cut(s) 420, 450, 574, 755, 1078
BtsCI GGATG 1 cut(s) 1069
BtsIMutI CAGTG 1 cut(s) 321
Cac8I GCNNGC 3 cut(s) 448, 674, 753
CfoI GCGC 1 cut(s) 898
Cfr10I RCCGGY 1 cut(s) 653
Cfr13I GGNCC 1 cut(s) 398
Csp6I GTAC 4 cut(s) 211, 688, 792, 805
CviAII CATG 2 cut(s) 258, 909
CviQI GTAC 4 cut(s) 211, 688, 792, 805
DdeI CTNAG 1 cut(s) 237
DpnI GATC 4 cut(s) 198, 560, 632, 969
DpnII GATC 4 cut(s) 196, 558, 630, 967
DriI GACNNNNNGTC 1 cut(s) 325
EaeI YGGCCR 1 cut(s) 753
Eam1104I CTCTTC 4 cut(s) 50, 235, 392, 538
Eam1105I GACNNNNNGTC 1 cut(s) 325
EarI CTCTTC 4 cut(s) 50, 235, 392, 538
EciI GGCGGA 1 cut(s) 481
Ecl136II GAGCTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 310, 1079
Eco147I AGGCCT 2 cut(s) 420, 574
Eco24I GRGCYC 1 cut(s) 533
Eco31I GGTCTC 2 cut(s) 373, 812
Eco47I GGWCC 1 cut(s) 398
Eco53kI GAGCTC 1 cut(s) 531
Eco57I CTGAAG 2 cut(s) 139, 898
EcoICRI GAGCTC 1 cut(s) 531
EcoNI CCTNNNNNAGG 1 cut(s) 240
EcoRII CCWGG 3 cut(s) 241, 355, 1111
EcoT14I CCWWGG 2 cut(s) 310, 1079
EcoT22I ATGCAT 1 cut(s) 850
EcoT38I GRGCYC 1 cut(s) 533
ErhI CCWWGG 2 cut(s) 310, 1079
FaeI CATG 2 cut(s) 261, 912
FaiI YATR 9 cut(s) 182, 259, 579, 774, 870, 910, 994, 1029, 1121
FalI AAGNNNNNCTT 2 cut(s) 154, 186
FaqI GGGAC 5 cut(s) 47, 313, 359, 384, 581
FatI CATG 2 cut(s) 257, 908
FauI CCCGC 1 cut(s) 296
FbaI TGATCA 1 cut(s) 630
Fnu4HI GCNGC 3 cut(s) 247, 304, 778
FokI GGATG 1 cut(s) 1076
FriOI GRGCYC 1 cut(s) 533
Fsp4HI GCNGC 3 cut(s) 247, 304, 778
FspBI CTAG 2 cut(s) 422, 546
GlaI GCGC 1 cut(s) 897
GluI GCNGC 3 cut(s) 247, 304, 778
HaeII RGCGCY 1 cut(s) 899
HaeIII GGCC 5 cut(s) 420, 450, 574, 755, 1078
HapII CCGG 3 cut(s) 113, 273, 654
HhaI GCGC 1 cut(s) 898
Hin1II CATG 2 cut(s) 261, 912
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HinfI GANTC 2 cut(s) 125, 799
HpaII CCGG 3 cut(s) 113, 273, 654
HphI GGTGA 4 cut(s) 139, 277, 808, 1082
Hpy166II GTNNAC 1 cut(s) 807
Hpy188I TCNGA 3 cut(s) 92, 905, 1010
Hpy188III TCNNGA 1 cut(s) 317
Hpy8I GTNNAC 1 cut(s) 807
HpyAV CCTTC 8 cut(s) 35, 75, 145, 163, 410, 687, 761, 969
HpyCH4III ACNGT 4 cut(s) 193, 325, 796, 811
HpyCH4V TGCA 4 cut(s) 249, 518, 848, 979
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 955
HpyF3I CTNAG 1 cut(s) 237
Hsp92II CATG 2 cut(s) 261, 912
HspAI GCGC 1 cut(s) 896
KpnI GGTACC 1 cut(s) 214
Ksp22I TGATCA 1 cut(s) 630
Kzo9I GATC 4 cut(s) 196, 558, 630, 967
LguI GCTCTTC 1 cut(s) 538
LmnI GCTCC 1 cut(s) 1010
Lsp1109I GCAGC 1 cut(s) 233
MaeI CTAG 2 cut(s) 422, 546
MaeIII GTNAC 3 cut(s) 275, 609, 934
MalI GATC 4 cut(s) 198, 560, 632, 969
MboI GATC 4 cut(s) 196, 558, 630, 967
MboII GAAGA 9 cut(s) 37, 46, 101, 222, 379, 525, 553, 934, 1100
MfeI CAATTG 1 cut(s) 963
MhlI GDGCHC 2 cut(s) 265, 533
MlsI TGGCCA 1 cut(s) 755
MluCI AATT 4 cut(s) 482, 519, 963, 1015
MluNI TGGCCA 1 cut(s) 755
MlyI GAGTC 1 cut(s) 119
MmeI TCCRAC 1 cut(s) 393
Mox20I TGGCCA 1 cut(s) 755
Mph1103I ATGCAT 1 cut(s) 850
MscI TGGCCA 1 cut(s) 755
MseI TTAA 1 cut(s) 711
MslI CAYNNNNRTG 1 cut(s) 698
Msp20I TGGCCA 1 cut(s) 755
MspI CCGG 3 cut(s) 113, 273, 654
MspR9I CCNGG 4 cut(s) 243, 273, 357, 1113
MunI CAATTG 1 cut(s) 963
Mva1269I GAATGC 2 cut(s) 850, 949
MvaI CCWGG 3 cut(s) 243, 357, 1113
MwoI GCNNNNNNNGC 2 cut(s) 80, 955
NciI CCSGG 1 cut(s) 273
NdeII GATC 4 cut(s) 196, 558, 630, 967
NlaIII CATG 2 cut(s) 261, 912
NlaIV GGNNCC 2 cut(s) 212, 400
NmeAIII GCCGAG 1 cut(s) 432
NmuCI GTSAC 1 cut(s) 609
NsiI ATGCAT 1 cut(s) 850
NspI RCATGY 2 cut(s) 261, 912
NspV TTCGAA 1 cut(s) 920
PceI AGGCCT 2 cut(s) 420, 574
PciI ACATGT 1 cut(s) 257
PciSI GCTCTTC 1 cut(s) 538
PcsI WCGNNNNNNNCGW 1 cut(s) 800
PctI GAATGC 2 cut(s) 850, 949
PfeI GAWTC 1 cut(s) 799
PkrI GCNGC 3 cut(s) 248, 305, 779
PleI GAGTC 1 cut(s) 119
PpsI GAGTC 1 cut(s) 119
PscI ACATGT 1 cut(s) 257
PshAI GACNNNNGTC 1 cut(s) 312
Psp124BI GAGCTC 1 cut(s) 533
Psp6I CCWGG 3 cut(s) 241, 355, 1111
PspGI CCWGG 3 cut(s) 241, 355, 1111
PspN4I GGNNCC 2 cut(s) 212, 400
PspPI GGNCC 1 cut(s) 398
RsaI GTAC 4 cut(s) 212, 689, 793, 806
RsaNI GTAC 4 cut(s) 211, 688, 792, 805
RseI CAYNNNNRTG 1 cut(s) 698
SacI GAGCTC 1 cut(s) 533
SapI GCTCTTC 1 cut(s) 538
SaqAI TTAA 1 cut(s) 711
SatI GCNGC 3 cut(s) 247, 304, 778
Sau3AI GATC 4 cut(s) 196, 558, 630, 967
Sau96I GGNCC 1 cut(s) 398
SchI GAGTC 1 cut(s) 119
ScrFI CCNGG 4 cut(s) 243, 273, 357, 1113
SduI GDGCHC 2 cut(s) 265, 533
SfuI TTCGAA 1 cut(s) 920
SinI GGWCC 1 cut(s) 398
SmiMI CAYNNNNRTG 1 cut(s) 698
Sse9I AATT 4 cut(s) 482, 519, 963, 1015
SseBI AGGCCT 2 cut(s) 420, 574
SsiI CCGC 6 cut(s) 289, 303, 396, 492, 777, 1061
SspI AATATT 1 cut(s) 595
SspMI CTAG 2 cut(s) 422, 546
SstI GAGCTC 1 cut(s) 533
StuI AGGCCT 2 cut(s) 420, 574
StyD4I CCNGG 4 cut(s) 241, 271, 355, 1111
StyI CCWWGG 2 cut(s) 310, 1079
TaaI ACNGT 4 cut(s) 193, 325, 796, 811
TaqI TCGA 3 cut(s) 539, 707, 920
TasI AATT 4 cut(s) 482, 519, 963, 1015
TauI GCSGC 2 cut(s) 306, 780
TfiI GAWTC 1 cut(s) 799
Tru1I TTAA 1 cut(s) 711
Tru9I TTAA 1 cut(s) 711
TscAI CASTG 1 cut(s) 328
TseFI GTSAC 1 cut(s) 609
TseI GCWGC 1 cut(s) 246
Tsp45I GTSAC 1 cut(s) 609
TspDTI ATGAA 5 cut(s) 8, 525, 682, 735, 780
TspGWI ACGGA 1 cut(s) 792
TspRI CASTG 1 cut(s) 328
VpaK11BI GGWCC 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 240
XapI RAATTY 1 cut(s) 1015
XceI RCATGY 2 cut(s) 261, 912
XcmI CCANNNNNNNNNTGG 1 cut(s) 409
XspI CTAG 2 cut(s) 422, 546
Zsp2I ATGCAT 1 cut(s) 850
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.