Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0000716

Physical Location & Seq

Genomic Coordinates Reverse (-)

37864305 .. 37865075

Gene Structure 771 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG218300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 654 bp

ATGGCCGGTCTTGGCAGGAGCAAAATTGGCCTCCCCTCCCAATTTGCTGCAGCTTGTAGCTTCCGTAGAAAATTTTCCATTTGCTTGAGCTCATCAAAAGAGCAGTCTGCCGAATACTTCATCGGGGTAAGGTCAATCAAGATCAGTGGAAAACATGTTTCATTAAACACTTCATTACTAACCATTAATGCAAACGGTTACGGAGGCACCAAGATAAGCACCGTGAATCCATATTCCGTATTGGAGACCTCACTCTACAATGCCGTAATTAATGCATTTGTGAAGGAACTCAAGAGGAACAACATCCGGAAAGTGGCATCTGTAGCGCATTTCGGAGCATGCTTCAACACGAAGGACATTGCCACAACAAGGGCCGGTTCGGTTGTGCCTCTGATACATCTTGTGCTCCAGAGCGAGAGCGTGTACTGGAGGATTGTTGGAGCAAACTCAATGGTGTGCATGAGCAATGAGGTCCTGTGTTTAGGCTTTGTGGACGGTGGTGTGGAGCAGAGAACTTCGATTGTGATTGGAGGGCATCAAATGGACGACAATCTTCTACTGTTTGATTTGGCTGCTAATAAGCTTGGGTTCAGCTCTTCACTCTTGTCCCAACAAACCAGTTTCGCCAACTTCAACTTCACATCTATTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

217

Amino Acids

23.37

Weight (kDa)

9.42

Isoelectric Point (pI)

40.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	1 - 42	3.3e-08	Xylanase inhibitor N-terminal
TAXi_C	PF14541	38 - 198	7.9e-57	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03220 AT1G03230
fragaria_vesca	FvH4_2g23780 FvH4_4g14611 FvH4_4g14611 FvH4_4g14640 FvH4_4g14660 FvH4_4g14670
malus_domestica	MD11G1287900.v1.1 MD13G1184500.v1.1 MD13G1184800.v1.1 MD13G1184900.v1.1 MD16G1185000.v1.1 MD16G1185100.v1.1 MD16G1185300.v1.1
prunus_persica	Prupe.1G152100_v2.0.a1 Prupe.1G152200_v2.0.a1 Prupe.8G243100_v2.0.a1
pyrus_communis	pycom11g25550 pycom13g15900 pycom13g15920 pycom16g15520
rosa_chinensis	RchiOBHm_Chr4g0417891 RchiOBHm_Chr4g0417921 RchiOBHm_Chr4g0417961 RchiOBHm_Chr4g0417971 RchiOBHm_Chr4g0417981 RchiOBHm_Chr6g0291301
rosa_laevigata	RLG00000007886 RLG00000007887 RLG00000007888 RLG00000007889 RLG00000007890 RLG00000012125
rosa_multiflora	Rmu_co8285195.1_g000001 Rmu_sc0000032.1_g000028
rosa_roxburghii	Rroxscaffold_160G00433800 Rroxscaffold_4G00327990 Rroxscaffold_5G00361320 Rroxscaffold_5G00361330 Rroxscaffold_5G00361340 Rroxscaffold_5G00361370 Rroxscaffold_5G00361380
rosa_rugosa	Rorug04G0150200 Rorug04G0150300 Rorug04G0150900 Rorug04G0151100 Rorug06G0218600
rosa_samantha	Rh4AG212500 Rh4AG212600 Rh4BG218100 Rh4BG218200 Rh4BG218300 Rh4BG218400 Rh4BG218500 Rh4CG223500 Rh4CG224100 Rh4CG224200 Rh4CG224500 Rh4DG210500 Rh4DG210800 Rh4DG211000 Rh4DG211100 Rh6AG330600 Rh6BG337500 Rh6BG337600 Rh6CG343900 Rh6DG330900
rosa_wichuraiana	Rw4G018040 Rw4G018050 Rw4G018060 Rw4G018070 Rw6G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	206
AccIII	TCCGGA	1 cut(s)	306
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	71
AfaI	GTAC	1 cut(s)	425
AfiI	CCNNNNNNNGG	2 cut(s)	313, 369
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	346, 634
AjuI	GAANNNNNNNTTGG	2 cut(s)	620, 652
AluBI	AGCT	5 cut(s)	53, 60, 90, 583, 594
AluI	AGCT	5 cut(s)	53, 60, 90, 583, 594
Alw21I	GWGCWC	2 cut(s)	92, 408
Alw26I	GTCTC	1 cut(s)	239
Aor13HI	TCCGGA	1 cut(s)	306
AoxI	GGCC	3 cut(s)	3, 28, 372
ApeKI	GCWGC	3 cut(s)	47, 50, 572
ApoI	RAATTY	1 cut(s)	71
ArsI	GACNNNNNNTTYG	2 cut(s)	89, 121
AseI	ATTAAT	2 cut(s)	186, 270
Asp700I	GAANNNNTTC	1 cut(s)	73
AspLEI	GCGC	1 cut(s)	328
AspS9I	GGNCC	2 cut(s)	372, 472
AvaII	GGWCC	1 cut(s)	472
BanI	GGYRCC	1 cut(s)	206
BanII	GRGCYC	1 cut(s)	92
Bbv12I	GWGCWC	2 cut(s)	92, 408
BbvI	GCAGC	3 cut(s)	34, 62, 559
BceAI	ACGGC	1 cut(s)	248
BcoDI	GTCTC	1 cut(s)	239
BfmI	CTRYAG	2 cut(s)	48, 321
BisI	GCNGC	3 cut(s)	48, 51, 573
BlsI	GCNGC	3 cut(s)	49, 52, 574
Bme18I	GGWCC	1 cut(s)	472
BmgT120I	GGNCC	2 cut(s)	372, 472
BmiI	GGNNCC	1 cut(s)	208
BmsI	GCATC	2 cut(s)	326, 544
BpmI	CTGGAG	2 cut(s)	392, 448
BpuEI	CTTGAG	2 cut(s)	106, 275
BsaI	GGTCTC	1 cut(s)	239
BsaWI	WCCGGW	1 cut(s)	306
Bsc4I	CCNNNNNNNGG	2 cut(s)	313, 369
Bse118I	RCCGGY	2 cut(s)	5, 374
Bse1I	ACTGG	2 cut(s)	431, 618
Bse3DI	GCAATG	2 cut(s)	357, 472
BseAI	TCCGGA	1 cut(s)	306
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	2 cut(s)	313, 369
BseMI	GCAATG	2 cut(s)	357, 472
BseNI	ACTGG	2 cut(s)	431, 618
BseXI	GCAGC	3 cut(s)	34, 62, 559
BshFI	GGCC	3 cut(s)	5, 30, 374
BshNI	GGYRCC	1 cut(s)	206
BsiHKAI	GWGCWC	2 cut(s)	92, 408
BsiSI	CCGG	3 cut(s)	6, 307, 375
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	2 cut(s)	313, 369
BsmAI	GTCTC	1 cut(s)	239
BsmFI	GGGAC	1 cut(s)	592
BsnI	GGCC	3 cut(s)	5, 30, 374
Bso31I	GGTCTC	1 cut(s)	239
Bsp1286I	GDGCHC	2 cut(s)	92, 408
Bsp13I	TCCGGA	1 cut(s)	306
Bsp143I	GATC	1 cut(s)	141
BspANI	GGCC	3 cut(s)	5, 30, 374
BspEI	TCCGGA	1 cut(s)	306
BspLI	GGNNCC	1 cut(s)	208
BspMAI	CTGCAG	1 cut(s)	52
BspQI	GCTCTTC	1 cut(s)	601
BspT107I	GGYRCC	1 cut(s)	206
BspTNI	GGTCTC	1 cut(s)	239
BsrDI	GCAATG	2 cut(s)	357, 472
BsrFI	RCCGGY	2 cut(s)	5, 374
BsrI	ACTGG	2 cut(s)	431, 618
BssAI	RCCGGY	2 cut(s)	5, 374
BssMI	GATC	1 cut(s)	141
Bst4CI	ACNGT	4 cut(s)	197, 223, 497, 561
Bst6I	CTCTTC	1 cut(s)	601
BstC8I	GCNNGC	1 cut(s)	340
BstF5I	GGATG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	328
BstKTI	GATC	1 cut(s)	144
BstMAI	GTCTC	1 cut(s)	239
BstMBI	GATC	1 cut(s)	141
BstMWI	GCNNNNNNNGC	2 cut(s)	27, 323
BstNSI	RCATGY	2 cut(s)	158, 342
BstSFI	CTRYAG	2 cut(s)	48, 321
BstV1I	GCAGC	3 cut(s)	34, 62, 559
BsuRI	GGCC	3 cut(s)	5, 30, 374
BtsCI	GGATG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	340
CfoI	GCGC	1 cut(s)	328
Cfr10I	RCCGGY	2 cut(s)	5, 374
Cfr13I	GGNCC	2 cut(s)	372, 472
Csp6I	GTAC	1 cut(s)	424
CspCI	CAANNNNNGTGG	2 cut(s)	127, 162
CviAII	CATG	3 cut(s)	155, 339, 460
CviQI	GTAC	1 cut(s)	424
DpnI	GATC	1 cut(s)	143
DpnII	GATC	1 cut(s)	141
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	601
EarI	CTCTTC	1 cut(s)	601
Ecl136II	GAGCTC	1 cut(s)	90
Eco24I	GRGCYC	1 cut(s)	92
Eco31I	GGTCTC	1 cut(s)	239
Eco47I	GGWCC	1 cut(s)	472
Eco53kI	GAGCTC	1 cut(s)	90
EcoICRI	GAGCTC	1 cut(s)	90
EcoO109I	RGGNCCY	1 cut(s)	472
EcoT22I	ATGCAT	1 cut(s)	277
EcoT38I	GRGCYC	1 cut(s)	92
FaeI	CATG	3 cut(s)	158, 342, 463
FaiI	YATR	4 cut(s)	156, 232, 340, 461
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	3 cut(s)	154, 338, 459
Fnu4HI	GCNGC	3 cut(s)	48, 51, 573
FokI	GGATG	1 cut(s)	290
FriOI	GRGCYC	1 cut(s)	92
Fsp4HI	GCNGC	3 cut(s)	48, 51, 573
GlaI	GCGC	1 cut(s)	327
GluI	GCNGC	3 cut(s)	48, 51, 573
GsuI	CTGGAG	2 cut(s)	392, 448
HaeIII	GGCC	3 cut(s)	5, 30, 374
HapII	CCGG	3 cut(s)	6, 307, 375
HhaI	GCGC	1 cut(s)	328
Hin1II	CATG	3 cut(s)	158, 342, 463
Hin6I	GCGC	1 cut(s)	326
HinP1I	GCGC	1 cut(s)	326
HindIII	AAGCTT	1 cut(s)	581
HinfI	GANTC	1 cut(s)	226
HpaII	CCGG	3 cut(s)	6, 307, 375
Hpy166II	GTNNAC	2 cut(s)	424, 493
Hpy188I	TCNGA	2 cut(s)	335, 393
Hpy188III	TCNNGA	4 cut(s)	139, 292, 307, 409
Hpy8I	GTNNAC	2 cut(s)	424, 493
HpyAV	CCTTC	2 cut(s)	277, 346
HpyCH4III	ACNGT	4 cut(s)	197, 223, 497, 561
HpyCH4V	TGCA	4 cut(s)	50, 191, 275, 459
HpyF10VI	GCNNNNNNNGC	2 cut(s)	27, 323
Hsp92II	CATG	3 cut(s)	158, 342, 463
HspAI	GCGC	1 cut(s)	326
Kpn2I	TCCGGA	1 cut(s)	306
Kzo9I	GATC	1 cut(s)	141
LguI	GCTCTTC	1 cut(s)	601
LmnI	GCTCC	5 cut(s)	18, 335, 411, 440, 505
LpnPI	CCDG	7 cut(s)	19, 320, 388, 412, 422, 488, 631
Lsp1109I	GCAGC	3 cut(s)	34, 62, 559
LweI	GCATC	2 cut(s)	326, 544
MaeIII	GTNAC	1 cut(s)	197
MalI	GATC	1 cut(s)	143
MboI	GATC	1 cut(s)	141
MboII	GAAGA	2 cut(s)	545, 588
MhlI	GDGCHC	2 cut(s)	92, 408
MluCI	AATT	4 cut(s)	24, 41, 71, 267
MmeI	TCCRAC	1 cut(s)	418
MnlI	CCTC	9 cut(s)	41, 46, 197, 259, 288, 399, 423, 463, 524
Mph1103I	ATGCAT	1 cut(s)	277
MroI	TCCGGA	1 cut(s)	306
MroXI	GAANNNNTTC	1 cut(s)	73
MseI	TTAA	3 cut(s)	164, 186, 270
MspI	CCGG	3 cut(s)	6, 307, 375
MwoI	GCNNNNNNNGC	2 cut(s)	27, 323
NdeII	GATC	1 cut(s)	141
NlaIII	CATG	3 cut(s)	158, 342, 463
NlaIV	GGNNCC	1 cut(s)	208
NsiI	ATGCAT	1 cut(s)	277
NspI	RCATGY	2 cut(s)	158, 342
PaeI	GCATGC	1 cut(s)	342
PciI	ACATGT	1 cut(s)	154
PciSI	GCTCTTC	1 cut(s)	601
PdmI	GAANNNNTTC	1 cut(s)	73
PfeI	GAWTC	1 cut(s)	226
PkrI	GCNGC	3 cut(s)	49, 52, 574
PpuMI	RGGWCCY	1 cut(s)	472
PscI	ACATGT	1 cut(s)	154
PshBI	ATTAAT	2 cut(s)	186, 270
Psp124BI	GAGCTC	1 cut(s)	92
Psp5II	RGGWCCY	1 cut(s)	472
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	2 cut(s)	372, 472
PspPPI	RGGWCCY	1 cut(s)	472
PstI	CTGCAG	1 cut(s)	52
RsaI	GTAC	1 cut(s)	425
RsaNI	GTAC	1 cut(s)	424
SacI	GAGCTC	1 cut(s)	92
SapI	GCTCTTC	1 cut(s)	601
SaqAI	TTAA	3 cut(s)	164, 186, 270
SatI	GCNGC	3 cut(s)	48, 51, 573
Sau3AI	GATC	1 cut(s)	141
Sau96I	GGNCC	2 cut(s)	372, 472
SduI	GDGCHC	2 cut(s)	92, 408
SetI	ASST	8 cut(s)	55, 62, 92, 134, 251, 474, 585, 596
SfaNI	GCATC	2 cut(s)	326, 544
SfcI	CTRYAG	2 cut(s)	48, 321
SinI	GGWCC	1 cut(s)	472
SmlI	CTYRAG	2 cut(s)	85, 290
SmoI	CTYRAG	2 cut(s)	85, 290
SphI	GCATGC	1 cut(s)	342
Sse9I	AATT	4 cut(s)	24, 41, 71, 267
SstI	GAGCTC	1 cut(s)	92
TaaI	ACNGT	4 cut(s)	197, 223, 497, 561
TaqI	TCGA	1 cut(s)	518
TasI	AATT	4 cut(s)	24, 41, 71, 267
TatI	WGTACW	1 cut(s)	423
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	3 cut(s)	164, 186, 270
Tru9I	TTAA	3 cut(s)	164, 186, 270
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	3 cut(s)	47, 50, 572
TspDTI	ATGAA	3 cut(s)	109, 150, 162
TspGWI	ACGGA	3 cut(s)	53, 216, 226
TspRI	CASTG	1 cut(s)	151
VpaK11BI	GGWCC	1 cut(s)	472
VspI	ATTAAT	2 cut(s)	186, 270
XapI	RAATTY	1 cut(s)	71
XceI	RCATGY	2 cut(s)	158, 342
XmnI	GAANNNNTTC	1 cut(s)	73
Zsp2I	ATGCAT	1 cut(s)	277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.