Rh4BG218500

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0000716
Physical Location & Seq
Forward (+)
37877933 .. 37879267
1335 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG218500.1

Sequence Viewer

Length: 1335 bp
ATGCGTTCAAAAAACCTCAATATTAAAAGACTTGAAACATCTATAAATTGTGATACAGCCTCCTCCCACTTCTTCAGCCCAGTCATCTTGAAAACAATGGCTTCCTCATCATTTCTTTGCCTTACTCTCCTTTCCTCACTCGTCTTCTTCATCGCCACTCCATCACTAGCAGAAACATCTTTCCGGCCCAAAGCCCTCGTTCTTCCGGTAGCTAAACACTCTCCCACTCACCAATACCTCACCAGCATCAAGCAAAGAACCCCTCTTGTTCCTGTTAGACTAACCCTAGACCTCGGCGGTCAGTTCCTTTGGGTAGACTGTCAACAAGGCTATGTCTCATCTACCTACAAACCTGCCCGTTGCAACTCGGCTCAATTCTCACTCGCAAACTCTAATGCGTGTACAACAGAGTGCGATTCTTCCCCCAAGCCAGGCTGCAACAACAACACATGTAGTGTCCTCCCAGACAACTCCGTGATCCCTACGTCCGGCAATGGCGGGGAGGTAGGTCAAGACGTCGTCTCCCTCCATTCCACAAATGGGTCTAACCCTACCACACTAGTTTATGTTCCTAACCTCCTCTTCGCTTGTGCTGAAATTTTTCTATTGGATCGCCTTGCAAGTGGTGTCAAAGGTATGGCTGGTCTTGGTAGAGCTAAAATTGGACTTCCTTCTCTATTTGCTTCCTCTTTTAGCTTCAAAAGAAAATTCACCATTTTCTTGCCCTCCTCAACAAAATCATACGATGCCGTTTTCTTCGGAGATGGGCCTTACAACCTTTTTCTTGGGATTGACATCTCTCAATCTCTTATTTACACCTCATTGCTCCTCAACCCTGTAAGCACTGCCAGTGCCTATTTTCAAGGCGATGCTTCTACGGAATACTTCATCAATGTAACGTCAATCAAGATCAACGACAAGGTCGTTTCGTCATTTAACAGTTCCTTGCTAACCATTGACGGAAATGGTTATGGCGGCACGAAGATCAACACGGTGCATCCCTACACGGTCTTGGAGATGTCAATCTACAACTCTTTGGTCAATGCATTTGTCAGTGAACTCTCTCATGTACCCAGAGTGACACTGGTAGCACCATTCGGAGCTTGCTTCAACTCAACCAACATTGTCAGCACGAGTGTTGGCCTGGCTATGCCAACCATCGACCTTGTGTTGCAGAGTGAGAGCGTGTACTGGAGAATCTTTGGTGCAAACTCGATGGTGCAGGTGACCAAGGACGTCCTGCGTTTAGGGTTTGTGGACAATGGTCAGAGCCCAAGTAATCCTAGAACTAATATTGTGATCGGAGGCCATCAGATTGCAAACAATCTTCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

444

Amino Acids

47.78

Weight (kDa)

8.61

Isoelectric Point (pI)

38.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 79 - 255 2.5e-39 Xylanase inhibitor N-terminal
TAXi_C PF14541 294 - 444 5.5e-43 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1213
AatII GACGTC 2 cut(s) 519, 1239
Acc36I ACCTGC 2 cut(s) 361, 1213
AccI GTMKAC 1 cut(s) 315
AciI CCGC 3 cut(s) 297, 498, 975
AclWI GGATC 2 cut(s) 472, 618
AcsI RAATTY 2 cut(s) 597, 707
AcuI CTGAAG 1 cut(s) 58
AcyI GRCGYC 2 cut(s) 516, 1236
AfaI GTAC 3 cut(s) 403, 1071, 1190
AfiI CCNNNNNNNGG 3 cut(s) 431, 488, 540
AflIII ACRYGT 1 cut(s) 449
AgsI TTSAA 6 cut(s) 9, 35, 91, 700, 863, 1111
AhlI ACTAGT 1 cut(s) 559
AjnI CCWGG 2 cut(s) 430, 1143
AluBI AGCT 4 cut(s) 212, 656, 696, 1103
AluI AGCT 4 cut(s) 212, 656, 696, 1103
Alw26I GTCTC 2 cut(s) 340, 526
AlwI GGATC 2 cut(s) 472, 618
AoxI GGCC 4 cut(s) 185, 767, 1141, 1306
ApeKI GCWGC 1 cut(s) 435
ApoI RAATTY 2 cut(s) 597, 707
Asp700I GAANNNNTTC 1 cut(s) 600
AspS9I GGNCC 2 cut(s) 186, 767
AsuHPI GGTGA 4 cut(s) 221, 232, 703, 1237
BanII GRGCYC 1 cut(s) 1274
BauI CACGAG 1 cut(s) 1132
BbsI GAAGAC 1 cut(s) 136
BbvI GCAGC 1 cut(s) 422
BccI CCATC 5 cut(s) 169, 758, 1166, 1210, 1317
BceAI ACGGC 1 cut(s) 734
BciT130I CCWGG 2 cut(s) 432, 1145
BcoDI GTCTC 2 cut(s) 340, 526
BcuI ACTAGT 1 cut(s) 559
BfaI CTAG 4 cut(s) 167, 287, 560, 1284
BfuAI ACCTGC 2 cut(s) 361, 1213
BisI GCNGC 2 cut(s) 436, 976
BlsI GCNGC 2 cut(s) 437, 977
Bme1390I CCNGG 2 cut(s) 432, 1145
BmgT120I GGNCC 2 cut(s) 186, 767
BmrFI CCNGG 2 cut(s) 432, 1145
BmrI ACTGGG 1 cut(s) 74
BmsI GCATC 4 cut(s) 255, 736, 859, 1006
BmuI ACTGGG 1 cut(s) 74
BoxI GACNNNNGTC 1 cut(s) 1263
BpiI GAAGAC 1 cut(s) 136
BpmI CTGGAG 1 cut(s) 1213
BsaBI GATNNNNATC 2 cut(s) 794, 1022
BsaHI GRCGYC 2 cut(s) 516, 1236
BsaJI CCNNGG 2 cut(s) 292, 1230
BsaWI WCCGGW 1 cut(s) 205
BsaXI ACNNNNNCTCC 2 cut(s) 506, 536
Bsc4I CCNNNNNNNGG 3 cut(s) 431, 488, 540
Bse1I ACTGG 4 cut(s) 80, 849, 1089, 1196
Bse3DI GCAATG 2 cut(s) 499, 821
Bse8I GATNNNNATC 2 cut(s) 794, 1022
BseBI CCWGG 2 cut(s) 432, 1145
BseDI CCNNGG 2 cut(s) 292, 1230
BseGI GGATG 1 cut(s) 997
BseJI GATNNNNATC 2 cut(s) 794, 1022
BseLI CCNNNNNNNGG 3 cut(s) 431, 488, 540
BseMI GCAATG 2 cut(s) 499, 821
BseNI ACTGG 4 cut(s) 80, 849, 1089, 1196
BseRI GAGGAG 4 cut(s) 52, 569, 718, 818
BseXI GCAGC 1 cut(s) 422
BsgI GTGCAG 1 cut(s) 1241
BshFI GGCC 4 cut(s) 187, 769, 1143, 1308
BsiSI CCGG 3 cut(s) 184, 206, 489
BslI CCNNNNNNNGG 3 cut(s) 431, 488, 540
BsmAI GTCTC 2 cut(s) 340, 526
BsmBI CGTCTC 1 cut(s) 526
BsnI GGCC 4 cut(s) 187, 769, 1143, 1308
Bsp1286I GDGCHC 1 cut(s) 1274
Bsp1407I TGTACA 1 cut(s) 401
Bsp143I GATC 5 cut(s) 477, 610, 909, 984, 1299
BspACI CCGC 3 cut(s) 297, 498, 975
BspANI GGCC 4 cut(s) 187, 769, 1143, 1308
BspMI ACCTGC 2 cut(s) 361, 1213
BspPI GGATC 2 cut(s) 472, 618
BsrDI GCAATG 2 cut(s) 499, 821
BsrGI TGTACA 1 cut(s) 401
BsrI ACTGG 4 cut(s) 80, 849, 1089, 1196
BssECI CCNNGG 2 cut(s) 292, 1230
BssMI GATC 5 cut(s) 477, 610, 909, 984, 1299
BssNI GRCGYC 2 cut(s) 516, 1236
BssSI CACGAG 1 cut(s) 1132
BssT1I CCWWGG 1 cut(s) 1230
Bst2BI CACGAG 1 cut(s) 1132
Bst2UI CCWGG 2 cut(s) 432, 1145
Bst4CI ACNGT 4 cut(s) 320, 941, 994, 1009
Bst6I CTCTTC 1 cut(s) 587
BstACI GRCGYC 2 cut(s) 516, 1236
BstAUI TGTACA 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 1105
BstEII GGTNACC 1 cut(s) 1225
BstF5I GGATG 1 cut(s) 997
BstKTI GATC 5 cut(s) 480, 613, 912, 987, 1302
BstMAI GTCTC 2 cut(s) 340, 526
BstMBI GATC 5 cut(s) 477, 610, 909, 984, 1299
BstNI CCWGG 2 cut(s) 432, 1145
BstNSI RCATGY 1 cut(s) 453
BstPAI GACNNNNGTC 1 cut(s) 1263
BstPI GGTNACC 1 cut(s) 1225
BstSCI CCNGG 2 cut(s) 430, 1143
BstV1I GCAGC 1 cut(s) 422
BstV2I GAAGAC 1 cut(s) 136
BsuRI GGCC 4 cut(s) 187, 769, 1143, 1308
BtgZI GCGATG 2 cut(s) 136, 882
BtsCI GGATG 1 cut(s) 997
BtsI GCAGTG 1 cut(s) 843
BtsIMutI CAGTG 4 cut(s) 843, 856, 1060, 1082
BveI ACCTGC 2 cut(s) 361, 1213
Cac8I GCNNGC 1 cut(s) 1105
Cfr13I GGNCC 2 cut(s) 186, 767
Csp6I GTAC 3 cut(s) 402, 1070, 1189
CviAII CATG 2 cut(s) 450, 1067
CviQI GTAC 3 cut(s) 402, 1070, 1189
DpnI GATC 5 cut(s) 479, 612, 911, 986, 1301
DpnII GATC 5 cut(s) 477, 610, 909, 984, 1299
Eam1104I CTCTTC 1 cut(s) 587
EarI CTCTTC 1 cut(s) 587
Eco130I CCWWGG 1 cut(s) 1230
Eco24I GRGCYC 1 cut(s) 1274
Eco57I CTGAAG 1 cut(s) 58
Eco91I GGTNACC 1 cut(s) 1225
EcoO65I GGTNACC 1 cut(s) 1225
EcoRII CCWGG 2 cut(s) 430, 1143
EcoT14I CCWWGG 1 cut(s) 1230
EcoT22I ATGCAT 1 cut(s) 1048
EcoT38I GRGCYC 1 cut(s) 1274
ErhI CCWWGG 1 cut(s) 1230
Esp3I CGTCTC 1 cut(s) 526
FaeI CATG 2 cut(s) 453, 1070
FaiI YATR 9 cut(s) 44, 333, 451, 567, 638, 742, 972, 1068, 1151
FatI CATG 2 cut(s) 449, 1066
FauI CCCGC 1 cut(s) 491
FblI GTMKAC 1 cut(s) 315
Fnu4HI GCNGC 2 cut(s) 436, 976
FokI GGATG 1 cut(s) 984
FriOI GRGCYC 1 cut(s) 1274
Fsp4HI GCNGC 2 cut(s) 436, 976
FspBI CTAG 4 cut(s) 167, 287, 560, 1284
GluI GCNGC 2 cut(s) 436, 976
GsuI CTGGAG 1 cut(s) 1213
HaeIII GGCC 4 cut(s) 187, 769, 1143, 1308
HapII CCGG 3 cut(s) 184, 206, 489
Hin1I GRCGYC 2 cut(s) 516, 1236
Hin1II CATG 2 cut(s) 453, 1070
HincII GTYRAC 1 cut(s) 323
HindII GTYRAC 1 cut(s) 323
HinfI GANTC 2 cut(s) 416, 1197
HpaII CCGG 3 cut(s) 184, 206, 489
HphI GGTGA 4 cut(s) 221, 232, 703, 1237
Hpy166II GTNNAC 6 cut(s) 316, 323, 402, 1058, 1189, 1258
Hpy188I TCNGA 5 cut(s) 761, 1100, 1269, 1304, 1314
Hpy188III TCNNGA 3 cut(s) 88, 512, 907
Hpy8I GTNNAC 6 cut(s) 316, 323, 402, 1058, 1189, 1258
Hpy99I CGWCG 1 cut(s) 521
HpyAV CCTTC 1 cut(s) 681
HpyCH4III ACNGT 4 cut(s) 320, 941, 994, 1009
HpyCH4IV ACGT 4 cut(s) 485, 516, 899, 1236
HpyCH4V TGCA 9 cut(s) 363, 438, 620, 997, 1046, 1174, 1208, 1222, 1319
HpySE526I ACGT 4 cut(s) 485, 516, 899, 1236
Hsp92I GRCGYC 2 cut(s) 516, 1236
Hsp92II CATG 2 cut(s) 453, 1070
Kzo9I GATC 5 cut(s) 477, 610, 909, 984, 1299
LmnI GCTCC 2 cut(s) 831, 1100
Lsp1109I GCAGC 1 cut(s) 422
LweI GCATC 4 cut(s) 255, 736, 859, 1006
MaeI CTAG 4 cut(s) 167, 287, 560, 1284
MaeII ACGT 4 cut(s) 485, 516, 899, 1236
MaeIII GTNAC 3 cut(s) 895, 1078, 1225
MalI GATC 5 cut(s) 479, 612, 911, 986, 1301
MboI GATC 5 cut(s) 477, 610, 909, 984, 1299
MboII GAAGA 9 cut(s) 64, 136, 139, 194, 411, 574, 748, 994, 1319
MhlI GDGCHC 1 cut(s) 1274
MluCI AATT 5 cut(s) 46, 374, 597, 660, 707
Mph1103I ATGCAT 1 cut(s) 1048
MroXI GAANNNNTTC 1 cut(s) 600
MseI TTAA 2 cut(s) 24, 936
MspI CCGG 3 cut(s) 184, 206, 489
MspR9I CCNGG 2 cut(s) 432, 1145
MvaI CCWGG 2 cut(s) 432, 1145
NdeII GATC 5 cut(s) 477, 610, 909, 984, 1299
NlaIII CATG 2 cut(s) 453, 1070
NmeAIII GCCGAG 2 cut(s) 273, 347
NmuCI GTSAC 2 cut(s) 1078, 1225
NsiI ATGCAT 1 cut(s) 1048
NspI RCATGY 1 cut(s) 453
PaqCI CACCTGC 1 cut(s) 1213
PciI ACATGT 1 cut(s) 449
PcsI WCGNNNNNNNCGW 1 cut(s) 921
PdmI GAANNNNTTC 1 cut(s) 600
PfeI GAWTC 2 cut(s) 416, 1197
PflFI GACNNNGTC 2 cut(s) 518, 920
PkrI GCNGC 2 cut(s) 437, 977
PscI ACATGT 1 cut(s) 449
PshAI GACNNNNGTC 1 cut(s) 1263
Psp6I CCWGG 2 cut(s) 430, 1143
PspEI GGTNACC 1 cut(s) 1225
PspGI CCWGG 2 cut(s) 430, 1143
PspPI GGNCC 2 cut(s) 186, 767
PsyI GACNNNGTC 2 cut(s) 518, 920
RsaI GTAC 3 cut(s) 403, 1071, 1190
RsaNI GTAC 3 cut(s) 402, 1070, 1189
SaqAI TTAA 2 cut(s) 24, 936
SatI GCNGC 2 cut(s) 436, 976
Sau3AI GATC 5 cut(s) 477, 610, 909, 984, 1299
Sau96I GGNCC 2 cut(s) 186, 767
ScrFI CCNGG 2 cut(s) 432, 1145
SduI GDGCHC 1 cut(s) 1274
SfaNI GCATC 4 cut(s) 255, 736, 859, 1006
SpeI ACTAGT 1 cut(s) 559
Sse9I AATT 5 cut(s) 46, 374, 597, 660, 707
SsiI CCGC 3 cut(s) 297, 498, 975
SspI AATATT 2 cut(s) 22, 1294
SspMI CTAG 4 cut(s) 167, 287, 560, 1284
StyD4I CCNGG 2 cut(s) 430, 1143
StyI CCWWGG 1 cut(s) 1230
TaaI ACNGT 4 cut(s) 320, 941, 994, 1009
TaiI ACGT 4 cut(s) 488, 519, 902, 1239
TaqI TCGA 2 cut(s) 1161, 1214
TasI AATT 5 cut(s) 46, 374, 597, 660, 707
TatI WGTACW 2 cut(s) 401, 1188
TauI GCSGC 1 cut(s) 978
TfiI GAWTC 2 cut(s) 416, 1197
Tru1I TTAA 2 cut(s) 24, 936
Tru9I TTAA 2 cut(s) 24, 936
TscAI CASTG 4 cut(s) 850, 856, 1060, 1089
TseFI GTSAC 2 cut(s) 1078, 1225
TseI GCWGC 1 cut(s) 435
Tsp45I GTSAC 2 cut(s) 1078, 1225
TspDTI ATGAA 2 cut(s) 139, 877
TspGWI ACGGA 3 cut(s) 463, 893, 975
TspRI CASTG 4 cut(s) 850, 856, 1060, 1089
Tth111I GACNNNGTC 2 cut(s) 518, 920
XapI RAATTY 2 cut(s) 597, 707
XceI RCATGY 1 cut(s) 453
XcmI CCANNNNNNNNNTGG 2 cut(s) 536, 1081
XmiI GTMKAC 1 cut(s) 315
XmnI GAANNNNTTC 1 cut(s) 600
XspI CTAG 4 cut(s) 167, 287, 560, 1284
ZraI GACGTC 2 cut(s) 517, 1237
Zsp2I ATGCAT 1 cut(s) 1048
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.