RchiOBHm_Chr4g0417891

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000716
Physical Location & Seq
Reverse (-)
43220228 .. 43220995
768 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38794

Sequence Viewer

Length: 768 bp
ATGGCTTCCTCATCATTTCTTTGCCTCACTCTCCTTTCCTCACTCGTCTTCTTCATCGCCACTCCATCACTAGCCAAAACATCTTTCCGGCCCAAAGCCCTCGTTCTTCCGGTAGCCAAACACTCTCCCACTCACCAATACCTCACCAGCATCAAGCAAAGAACCCCTCTTGTTCCTGTTAGACTAACCCTAGACCTCGGTGGTCAGTTCCTTTGGGTAGACTGTCAACAAGGCTATGTCTCATCTACCTACAAACCTGCCCGTTGCAACTCGTCTCAATGCTCGCTCGCAAACTCTACGGCGTGTACAACAGAGTGCAATTCTTCCCCCAGGCCAGGCTGCAACAACAACACATGTAGTGTCCTCCCAGACAACTCCGTGATCCCCACGTCCGGCAACAGCGGGGAGGTAGGTCAAGACGTCGTCTCCCTCCATTCCACAAATGGGTCTAACCCTACCACACTAGTTTCAGTTCCCAACTTCCTCTTCGCTTGTGCTGAAACTTTTCTATTGGACCGCCTTGCAAGTGGTGTCAAAGGTATGGCTGGTCTTGGTAGAGCTAAAATTGGACTTCCTTCTCTATTTTCTTCCGCTTTTAGCTTCAAAAGAAAATTCGCCATTTGCTTGCCCTCCTCAACAAAATCATACGGTGCCGTTTTCTTTGGAGATGGGCCTTACAACCTTCTTCCTGGGATTGACGTCTCTGAATCTCTTATTTACACCCCATTGCTCCTCAACCCTATAAGCACTGCCAGTGCCTATTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

255

Amino Acids

27.04

Weight (kDa)

8.94

Isoelectric Point (pI)

38.28

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 47 - 223 6.7e-46 Xylanase inhibitor N-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 423, 702
Acc36I ACCTGC 1 cut(s) 265
AccB1I GGYRCC 1 cut(s) 650
AccI GTMKAC 1 cut(s) 219
AciI CCGC 3 cut(s) 402, 517, 591
AclWI GGATC 1 cut(s) 376
AcsI RAATTY 1 cut(s) 611
AcyI GRCGYC 2 cut(s) 420, 699
AfaI GTAC 1 cut(s) 307
AfiI CCNNNNNNNGG 3 cut(s) 335, 392, 444
AflIII ACRYGT 1 cut(s) 353
AgsI TTSAA 1 cut(s) 604
AhlI ACTAGT 1 cut(s) 463
AjiI CACGTC 1 cut(s) 390
AjnI CCWGG 3 cut(s) 329, 334, 688
AjuI GAANNNNNNNTTGG 4 cut(s) 68, 100, 470, 502
AluBI AGCT 2 cut(s) 560, 600
AluI AGCT 2 cut(s) 560, 600
Alw26I GTCTC 4 cut(s) 244, 279, 430, 706
AlwI GGATC 1 cut(s) 376
AoxI GGCC 3 cut(s) 89, 332, 671
ApeKI GCWGC 1 cut(s) 339
ApoI RAATTY 1 cut(s) 611
Asp700I GAANNNNTTC 1 cut(s) 504
AspS9I GGNCC 3 cut(s) 90, 514, 671
AsuHPI GGTGA 2 cut(s) 125, 136
AvaII GGWCC 1 cut(s) 514
BanI GGYRCC 1 cut(s) 650
BbsI GAAGAC 1 cut(s) 40
BbvI GCAGC 1 cut(s) 326
BccI CCATC 2 cut(s) 73, 662
BceAI ACGGC 2 cut(s) 315, 638
BciT130I CCWGG 3 cut(s) 331, 336, 690
BcoDI GTCTC 4 cut(s) 244, 279, 430, 706
BcuI ACTAGT 1 cut(s) 463
BfaI CTAG 3 cut(s) 71, 191, 464
BfuAI ACCTGC 1 cut(s) 265
BisI GCNGC 1 cut(s) 340
BlsI GCNGC 1 cut(s) 341
Bme1390I CCNGG 3 cut(s) 331, 336, 690
Bme18I GGWCC 1 cut(s) 514
BmgBI CACGTC 1 cut(s) 390
BmgT120I GGNCC 3 cut(s) 90, 514, 671
BmiI GGNNCC 1 cut(s) 652
BmrFI CCNGG 3 cut(s) 331, 336, 690
BmsI GCATC 1 cut(s) 159
BpiI GAAGAC 1 cut(s) 40
BsaHI GRCGYC 2 cut(s) 420, 699
BsaJI CCNNGG 3 cut(s) 196, 329, 689
BsaWI WCCGGW 1 cut(s) 109
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bsc4I CCNNNNNNNGG 3 cut(s) 335, 392, 444
Bse1I ACTGG 1 cut(s) 753
Bse3DI GCAATG 1 cut(s) 725
BseBI CCWGG 3 cut(s) 331, 336, 690
BseDI CCNNGG 3 cut(s) 196, 329, 689
BseLI CCNNNNNNNGG 3 cut(s) 335, 392, 444
BseMI GCAATG 1 cut(s) 725
BseNI ACTGG 1 cut(s) 753
BseRI GAGGAG 2 cut(s) 622, 722
BseXI GCAGC 1 cut(s) 326
BshFI GGCC 3 cut(s) 91, 334, 673
BshNI GGYRCC 1 cut(s) 650
BsiSI CCGG 3 cut(s) 88, 110, 393
BslI CCNNNNNNNGG 3 cut(s) 335, 392, 444
BsmAI GTCTC 4 cut(s) 244, 279, 430, 706
BsmBI CGTCTC 3 cut(s) 279, 430, 706
BsnI GGCC 3 cut(s) 91, 334, 673
Bsp1407I TGTACA 1 cut(s) 305
Bsp143I GATC 1 cut(s) 381
BspACI CCGC 3 cut(s) 402, 517, 591
BspANI GGCC 3 cut(s) 91, 334, 673
BspLI GGNNCC 1 cut(s) 652
BspMI ACCTGC 1 cut(s) 265
BspPI GGATC 1 cut(s) 376
BspT107I GGYRCC 1 cut(s) 650
BsrDI GCAATG 1 cut(s) 725
BsrGI TGTACA 1 cut(s) 305
BsrI ACTGG 1 cut(s) 753
BssECI CCNNGG 3 cut(s) 196, 329, 689
BssMI GATC 1 cut(s) 381
BssNI GRCGYC 2 cut(s) 420, 699
Bst2UI CCWGG 3 cut(s) 331, 336, 690
Bst4CI ACNGT 2 cut(s) 224, 650
Bst6I CTCTTC 1 cut(s) 491
BstACI GRCGYC 2 cut(s) 420, 699
BstAUI TGTACA 1 cut(s) 305
BstC8I GCNNGC 3 cut(s) 284, 288, 626
BstKTI GATC 1 cut(s) 384
BstMAI GTCTC 4 cut(s) 244, 279, 430, 706
BstMBI GATC 1 cut(s) 381
BstNI CCWGG 3 cut(s) 331, 336, 690
BstNSI RCATGY 1 cut(s) 357
BstSCI CCNGG 3 cut(s) 329, 334, 688
BstV1I GCAGC 1 cut(s) 326
BstV2I GAAGAC 1 cut(s) 40
BsuRI GGCC 3 cut(s) 91, 334, 673
BtgZI GCGATG 1 cut(s) 40
BtrI CACGTC 1 cut(s) 390
BtsI GCAGTG 1 cut(s) 747
BtsIMutI CAGTG 2 cut(s) 747, 760
BveI ACCTGC 1 cut(s) 265
Cac8I GCNNGC 3 cut(s) 284, 288, 626
Cfr13I GGNCC 3 cut(s) 90, 514, 671
Csp6I GTAC 1 cut(s) 306
CviAII CATG 1 cut(s) 354
CviQI GTAC 1 cut(s) 306
DpnI GATC 1 cut(s) 383
DpnII GATC 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 491
EarI CTCTTC 1 cut(s) 491
Eco47I GGWCC 1 cut(s) 514
EcoRII CCWGG 3 cut(s) 329, 334, 688
Esp3I CGTCTC 3 cut(s) 279, 430, 706
FaeI CATG 1 cut(s) 357
FaiI YATR 5 cut(s) 237, 355, 542, 646, 743
FatI CATG 1 cut(s) 353
FauI CCCGC 1 cut(s) 395
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 340
Fsp4HI GCNGC 1 cut(s) 340
FspBI CTAG 3 cut(s) 71, 191, 464
GluI GCNGC 1 cut(s) 340
HaeIII GGCC 3 cut(s) 91, 334, 673
HapII CCGG 3 cut(s) 88, 110, 393
Hin1I GRCGYC 2 cut(s) 420, 699
Hin1II CATG 1 cut(s) 357
HincII GTYRAC 1 cut(s) 227
HindII GTYRAC 1 cut(s) 227
HinfI GANTC 1 cut(s) 707
HpaII CCGG 3 cut(s) 88, 110, 393
HphI GGTGA 2 cut(s) 125, 136
Hpy166II GTNNAC 3 cut(s) 220, 227, 306
Hpy188I TCNGA 1 cut(s) 706
Hpy188III TCNNGA 1 cut(s) 416
Hpy8I GTNNAC 3 cut(s) 220, 227, 306
Hpy99I CGWCG 1 cut(s) 425
HpyAV CCTTC 2 cut(s) 585, 692
HpyCH4III ACNGT 2 cut(s) 224, 650
HpyCH4IV ACGT 3 cut(s) 389, 420, 699
HpyCH4V TGCA 4 cut(s) 267, 318, 342, 524
HpySE526I ACGT 3 cut(s) 389, 420, 699
Hsp92I GRCGYC 2 cut(s) 420, 699
Hsp92II CATG 1 cut(s) 357
Kzo9I GATC 1 cut(s) 381
LmnI GCTCC 1 cut(s) 735
Lsp1109I GCAGC 1 cut(s) 326
LweI GCATC 1 cut(s) 159
MaeI CTAG 3 cut(s) 71, 191, 464
MaeII ACGT 3 cut(s) 389, 420, 699
MalI GATC 1 cut(s) 383
MboI GATC 1 cut(s) 381
MboII GAAGA 7 cut(s) 40, 43, 98, 315, 478, 579, 677
MluCI AATT 3 cut(s) 319, 564, 611
MroXI GAANNNNTTC 1 cut(s) 504
MspA1I CMGCKG 1 cut(s) 402
MspI CCGG 3 cut(s) 88, 110, 393
MspR9I CCNGG 3 cut(s) 331, 336, 690
MvaI CCWGG 3 cut(s) 331, 336, 690
NdeII GATC 1 cut(s) 381
NlaIII CATG 1 cut(s) 357
NlaIV GGNNCC 1 cut(s) 652
NspI RCATGY 1 cut(s) 357
PciI ACATGT 1 cut(s) 353
PdmI GAANNNNTTC 1 cut(s) 504
PfeI GAWTC 1 cut(s) 707
PflFI GACNNNGTC 1 cut(s) 422
PkrI GCNGC 1 cut(s) 341
PscI ACATGT 1 cut(s) 353
Psp6I CCWGG 3 cut(s) 329, 334, 688
PspGI CCWGG 3 cut(s) 329, 334, 688
PspN4I GGNNCC 1 cut(s) 652
PspPI GGNCC 3 cut(s) 90, 514, 671
PsyI GACNNNGTC 1 cut(s) 422
RsaI GTAC 1 cut(s) 307
RsaNI GTAC 1 cut(s) 306
SatI GCNGC 1 cut(s) 340
Sau3AI GATC 1 cut(s) 381
Sau96I GGNCC 3 cut(s) 90, 514, 671
ScrFI CCNGG 3 cut(s) 331, 336, 690
SfaNI GCATC 1 cut(s) 159
SinI GGWCC 1 cut(s) 514
SpeI ACTAGT 1 cut(s) 463
Sse9I AATT 3 cut(s) 319, 564, 611
SsiI CCGC 3 cut(s) 402, 517, 591
SspMI CTAG 3 cut(s) 71, 191, 464
StyD4I CCNGG 3 cut(s) 329, 334, 688
TaaI ACNGT 2 cut(s) 224, 650
TaiI ACGT 3 cut(s) 392, 423, 702
TasI AATT 3 cut(s) 319, 564, 611
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 1 cut(s) 707
TscAI CASTG 2 cut(s) 754, 760
TseI GCWGC 1 cut(s) 339
TspDTI ATGAA 1 cut(s) 43
TspGWI ACGGA 1 cut(s) 367
TspRI CASTG 2 cut(s) 754, 760
Tth111I GACNNNGTC 1 cut(s) 422
VpaK11BI GGWCC 1 cut(s) 514
XapI RAATTY 1 cut(s) 611
XceI RCATGY 1 cut(s) 357
XcmI CCANNNNNNNNNTGG 1 cut(s) 440
XmiI GTMKAC 1 cut(s) 219
XmnI GAANNNNTTC 1 cut(s) 504
XspI CTAG 3 cut(s) 71, 191, 464
ZraI GACGTC 2 cut(s) 421, 700
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.