Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0000716

Physical Location & Seq

Genomic Coordinates Reverse (-)

50601119 .. 50615256

Gene Structure 14138 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG212500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGCATGTGATAATAAATGTCATGGCTGCTTCCGATACAACCGCGTGTACAGCAAAGTGCAATTCTTCCCCCAGGCCAGGCTGCAACAACAACACATGTAGTGTCCTCCCAGACAACTCCGTGATCCCCACGTCCGGCAACAGCAAAGAGGTAGGTCAAGACGTCGTCTCCCTCCATTCCACAGATGGGTCTAACCCTACCACACTAGTTTCTGTTCCCAACTTCCTCTTCGCTTGTGCTGAAACTTTTCTATTGGACCGCCTTGCAAGTGGTGTCAAAGGTATGGCTGGTCTTGGTAGAGCTAAACTTGGACTTCCTTCTCTATTTGCTTCCGCTTTTAGCTTCAAAAGAAAATTCGCCATTTGCTTGCCCTCCTCAACAAAATCATACGGTGCCGTTTTCTTCGGAGATGGGCCTTACAACCTTCTTCCTGGGATTGACGTCTCTCAATCTCTTATTTACACCCCATTGCTCCTCAACCCTGTAAGCACTGCTAGTGCCTATTTTCAAGGCGATGCTTCTACGGAATACTTCATCAATGTAAAGTCAATCAAGATCAACGACAAGGTCGTTTCGTCATTTAACAGTTCCTTGCTAACCATTGACGAATATGGTTATGGCGGCATGAAGATCAGCACGGTGCATCCCTACACGGTCTTGGAGACGTCAATCTACAACGATGTGGTCAATGCATTTGTCAGTGAACTCTCTCATGTACCCAGAGTGACACCCGTGGAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

247

Amino Acids

26.2

Weight (kDa)

6.05

Isoelectric Point (pI)

29.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	12 - 137	4.8e-28	Xylanase inhibitor N-terminal
TAXi_C	PF14541	176 - 245	4e-17	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03220 AT1G03230
fragaria_vesca	FvH4_2g23780 FvH4_4g14611 FvH4_4g14611 FvH4_4g14640 FvH4_4g14660 FvH4_4g14670
malus_domestica	MD11G1287900.v1.1 MD13G1184500.v1.1 MD13G1184800.v1.1 MD13G1184900.v1.1 MD16G1185000.v1.1 MD16G1185100.v1.1 MD16G1185300.v1.1
prunus_persica	Prupe.1G152100_v2.0.a1 Prupe.1G152200_v2.0.a1 Prupe.8G243100_v2.0.a1
pyrus_communis	pycom11g25550 pycom13g15900 pycom13g15920 pycom16g15520
rosa_chinensis	RchiOBHm_Chr4g0417891 RchiOBHm_Chr4g0417921 RchiOBHm_Chr4g0417961 RchiOBHm_Chr4g0417971 RchiOBHm_Chr4g0417981 RchiOBHm_Chr6g0291301
rosa_laevigata	RLG00000007886 RLG00000007887 RLG00000007888 RLG00000007889 RLG00000007890 RLG00000012125
rosa_multiflora	Rmu_co8285195.1_g000001 Rmu_sc0000032.1_g000028
rosa_roxburghii	Rroxscaffold_160G00433800 Rroxscaffold_4G00327990 Rroxscaffold_5G00361320 Rroxscaffold_5G00361330 Rroxscaffold_5G00361340 Rroxscaffold_5G00361370 Rroxscaffold_5G00361380
rosa_rugosa	Rorug04G0150200 Rorug04G0150300 Rorug04G0150900 Rorug04G0151100 Rorug06G0218600
rosa_samantha	Rh4AG212500 Rh4AG212600 Rh4BG218100 Rh4BG218200 Rh4BG218300 Rh4BG218400 Rh4BG218500 Rh4CG223500 Rh4CG224100 Rh4CG224200 Rh4CG224500 Rh4DG210500 Rh4DG210800 Rh4DG211000 Rh4DG211100 Rh6AG330600 Rh6BG337500 Rh6BG337600 Rh6CG343900 Rh6DG330900
rosa_wichuraiana	Rw4G018040 Rw4G018050 Rw4G018060 Rw4G018070 Rw6G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	3 cut(s)	165, 444, 668
AccB1I	GGYRCC	1 cut(s)	392
AccII	CGCG	1 cut(s)	44
AciI	CCGC	4 cut(s)	42, 259, 333, 621
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	353
AcyI	GRCGYC	3 cut(s)	162, 441, 665
AfaI	GTAC	2 cut(s)	49, 717
AfiI	CCNNNNNNNGG	3 cut(s)	77, 134, 186
AflIII	ACRYGT	1 cut(s)	95
AgsI	TTSAA	2 cut(s)	346, 509
AhlI	ACTAGT	1 cut(s)	205
AjiI	CACGTC	1 cut(s)	132
AjnI	CCWGG	3 cut(s)	71, 76, 430
AjuI	GAANNNNNNNTTGG	2 cut(s)	212, 244
AluBI	AGCT	3 cut(s)	302, 342, 740
AluI	AGCT	3 cut(s)	302, 342, 740
Alw26I	GTCTC	3 cut(s)	172, 448, 656
AlwI	GGATC	1 cut(s)	118
AoxI	GGCC	2 cut(s)	74, 413
ApeKI	GCWGC	2 cut(s)	26, 81
ApoI	RAATTY	1 cut(s)	353
Asp700I	GAANNNNTTC	1 cut(s)	246
AspS9I	GGNCC	2 cut(s)	256, 413
AvaII	GGWCC	1 cut(s)	256
BanI	GGYRCC	1 cut(s)	392
BbvI	GCAGC	2 cut(s)	13, 68
BccI	CCATC	2 cut(s)	179, 404
BceAI	ACGGC	1 cut(s)	380
BciT130I	CCWGG	3 cut(s)	73, 78, 432
BcoDI	GTCTC	3 cut(s)	172, 448, 656
BcuI	ACTAGT	1 cut(s)	205
BfaI	CTAG	2 cut(s)	206, 495
BisI	GCNGC	3 cut(s)	27, 82, 622
BlsI	GCNGC	3 cut(s)	28, 83, 623
Bme1390I	CCNGG	3 cut(s)	73, 78, 432
Bme18I	GGWCC	1 cut(s)	256
BmgBI	CACGTC	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	256, 413
BmiI	GGNNCC	1 cut(s)	394
BmrFI	CCNGG	3 cut(s)	73, 78, 432
BmsI	GCATC	2 cut(s)	505, 652
BsaHI	GRCGYC	3 cut(s)	162, 441, 665
BsaJI	CCNNGG	3 cut(s)	71, 431, 732
BsaXI	ACNNNNNCTCC	2 cut(s)	152, 182
Bsc4I	CCNNNNNNNGG	3 cut(s)	77, 134, 186
Bse3DI	GCAATG	1 cut(s)	467
BseBI	CCWGG	3 cut(s)	73, 78, 432
BseDI	CCNNGG	3 cut(s)	71, 431, 732
BseGI	GGATG	1 cut(s)	643
BseLI	CCNNNNNNNGG	3 cut(s)	77, 134, 186
BseMI	GCAATG	1 cut(s)	467
BseRI	GAGGAG	2 cut(s)	364, 464
BseXI	GCAGC	2 cut(s)	13, 68
Bsh1236I	CGCG	1 cut(s)	44
BshFI	GGCC	2 cut(s)	76, 415
BshNI	GGYRCC	1 cut(s)	392
BsiSI	CCGG	1 cut(s)	135
BslI	CCNNNNNNNGG	3 cut(s)	77, 134, 186
BsmAI	GTCTC	3 cut(s)	172, 448, 656
BsmBI	CGTCTC	3 cut(s)	172, 448, 656
BsnI	GGCC	2 cut(s)	76, 415
Bsp1407I	TGTACA	1 cut(s)	47
Bsp143I	GATC	3 cut(s)	123, 555, 630
BspACI	CCGC	4 cut(s)	42, 259, 333, 621
BspANI	GGCC	2 cut(s)	76, 415
BspFNI	CGCG	1 cut(s)	44
BspLI	GGNNCC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	118
BspT107I	GGYRCC	1 cut(s)	392
BsrDI	GCAATG	1 cut(s)	467
BsrGI	TGTACA	1 cut(s)	47
BssECI	CCNNGG	3 cut(s)	71, 431, 732
BssMI	GATC	3 cut(s)	123, 555, 630
BssNI	GRCGYC	3 cut(s)	162, 441, 665
Bst2UI	CCWGG	3 cut(s)	73, 78, 432
Bst4CI	ACNGT	4 cut(s)	392, 587, 640, 655
Bst6I	CTCTTC	1 cut(s)	233
BstACI	GRCGYC	3 cut(s)	162, 441, 665
BstAUI	TGTACA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	368
BstDEI	CTNAG	1 cut(s)	741
BstDSI	CCRYGG	1 cut(s)	732
BstF5I	GGATG	1 cut(s)	643
BstFNI	CGCG	1 cut(s)	44
BstKTI	GATC	3 cut(s)	126, 558, 633
BstMAI	GTCTC	3 cut(s)	172, 448, 656
BstMBI	GATC	3 cut(s)	123, 555, 630
BstMWI	GCNNNNNNNGC	1 cut(s)	50
BstNI	CCWGG	3 cut(s)	73, 78, 432
BstNSI	RCATGY	2 cut(s)	8, 99
BstSCI	CCNGG	3 cut(s)	71, 76, 430
BstUI	CGCG	1 cut(s)	44
BstV1I	GCAGC	2 cut(s)	13, 68
BsuRI	GGCC	2 cut(s)	76, 415
BtgI	CCRYGG	1 cut(s)	732
BtgZI	GCGATG	1 cut(s)	528
BtrI	CACGTC	1 cut(s)	132
BtsCI	GGATG	1 cut(s)	643
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	2 cut(s)	489, 706
Cac8I	GCNNGC	1 cut(s)	368
Cfr13I	GGNCC	2 cut(s)	256, 413
Csp6I	GTAC	2 cut(s)	48, 716
CviAII	CATG	5 cut(s)	5, 22, 96, 625, 713
CviJI	RGCY	8 cut(s)	26, 76, 81, 287, 302, 342, 415, 740
CviKI_1	RGCY	8 cut(s)	26, 76, 81, 287, 302, 342, 415, 740
CviQI	GTAC	2 cut(s)	48, 716
DdeI	CTNAG	1 cut(s)	741
DpnI	GATC	3 cut(s)	125, 557, 632
DpnII	GATC	3 cut(s)	123, 555, 630
Eam1104I	CTCTTC	1 cut(s)	233
EarI	CTCTTC	1 cut(s)	233
Eco47I	GGWCC	1 cut(s)	256
EcoRII	CCWGG	3 cut(s)	71, 76, 430
EcoT22I	ATGCAT	2 cut(s)	6, 694
Esp3I	CGTCTC	3 cut(s)	172, 448, 656
FaeI	CATG	5 cut(s)	8, 25, 99, 628, 716
FaiI	YATR	9 cut(s)	6, 23, 97, 284, 388, 612, 618, 626, 714
FatI	CATG	5 cut(s)	4, 21, 95, 624, 712
Fnu4HI	GCNGC	3 cut(s)	27, 82, 622
FokI	GGATG	1 cut(s)	630
Fsp4HI	GCNGC	3 cut(s)	27, 82, 622
FspBI	CTAG	2 cut(s)	206, 495
GluI	GCNGC	3 cut(s)	27, 82, 622
HaeIII	GGCC	2 cut(s)	76, 415
HapII	CCGG	1 cut(s)	135
Hin1I	GRCGYC	3 cut(s)	162, 441, 665
Hin1II	CATG	5 cut(s)	8, 25, 99, 628, 716
HindIII	AAGCTT	1 cut(s)	738
HpaII	CCGG	1 cut(s)	135
Hpy166II	GTNNAC	2 cut(s)	48, 704
Hpy188I	TCNGA	2 cut(s)	34, 407
Hpy188III	TCNNGA	2 cut(s)	158, 553
Hpy8I	GTNNAC	2 cut(s)	48, 704
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	2 cut(s)	327, 434
HpyCH4III	ACNGT	4 cut(s)	392, 587, 640, 655
HpyCH4IV	ACGT	4 cut(s)	131, 162, 441, 665
HpyCH4V	TGCA	6 cut(s)	4, 60, 84, 266, 643, 692
HpyF10VI	GCNNNNNNNGC	1 cut(s)	50
HpyF3I	CTNAG	1 cut(s)	741
HpySE526I	ACGT	4 cut(s)	131, 162, 441, 665
Hsp92I	GRCGYC	3 cut(s)	162, 441, 665
Hsp92II	CATG	5 cut(s)	8, 25, 99, 628, 716
Kzo9I	GATC	3 cut(s)	123, 555, 630
LmnI	GCTCC	1 cut(s)	477
Lsp1109I	GCAGC	2 cut(s)	13, 68
LweI	GCATC	2 cut(s)	505, 652
MaeI	CTAG	2 cut(s)	206, 495
MaeII	ACGT	4 cut(s)	131, 162, 441, 665
MaeIII	GTNAC	1 cut(s)	724
MalI	GATC	3 cut(s)	125, 557, 632
MboI	GATC	3 cut(s)	123, 555, 630
MboII	GAAGA	5 cut(s)	57, 220, 394, 419, 640
MluCI	AATT	2 cut(s)	61, 353
MnlI	CCTC	7 cut(s)	116, 142, 182, 236, 382, 385, 485
Mph1103I	ATGCAT	2 cut(s)	6, 694
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	582
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	3 cut(s)	73, 78, 432
MvaI	CCWGG	3 cut(s)	73, 78, 432
MvnI	CGCG	1 cut(s)	44
MwoI	GCNNNNNNNGC	1 cut(s)	50
NdeII	GATC	3 cut(s)	123, 555, 630
NlaIII	CATG	5 cut(s)	8, 25, 99, 628, 716
NlaIV	GGNNCC	1 cut(s)	394
NmuCI	GTSAC	1 cut(s)	724
NsiI	ATGCAT	2 cut(s)	6, 694
NspI	RCATGY	2 cut(s)	8, 99
PciI	ACATGT	1 cut(s)	95
PcsI	WCGNNNNNNNCGW	1 cut(s)	567
PdmI	GAANNNNTTC	1 cut(s)	246
PflFI	GACNNNGTC	2 cut(s)	164, 566
PkrI	GCNGC	3 cut(s)	28, 83, 623
PscI	ACATGT	1 cut(s)	95
Psp6I	CCWGG	3 cut(s)	71, 76, 430
PspGI	CCWGG	3 cut(s)	71, 76, 430
PspN4I	GGNNCC	1 cut(s)	394
PspPI	GGNCC	2 cut(s)	256, 413
PsyI	GACNNNGTC	2 cut(s)	164, 566
RsaI	GTAC	2 cut(s)	49, 717
RsaNI	GTAC	2 cut(s)	48, 716
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	3 cut(s)	27, 82, 622
Sau3AI	GATC	3 cut(s)	123, 555, 630
Sau96I	GGNCC	2 cut(s)	256, 413
ScrFI	CCNGG	3 cut(s)	73, 78, 432
SfaNI	GCATC	2 cut(s)	505, 652
SinI	GGWCC	1 cut(s)	256
SpeI	ACTAGT	1 cut(s)	205
Sse9I	AATT	2 cut(s)	61, 353
SsiI	CCGC	4 cut(s)	42, 259, 333, 621
SspMI	CTAG	2 cut(s)	206, 495
StyD4I	CCNGG	3 cut(s)	71, 76, 430
TaaI	ACNGT	4 cut(s)	392, 587, 640, 655
TaiI	ACGT	4 cut(s)	134, 165, 444, 668
TasI	AATT	2 cut(s)	61, 353
TatI	WGTACW	1 cut(s)	47
TauI	GCSGC	1 cut(s)	624
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	2 cut(s)	496, 706
TseFI	GTSAC	1 cut(s)	724
TseI	GCWGC	2 cut(s)	26, 81
Tsp45I	GTSAC	1 cut(s)	724
TspDTI	ATGAA	2 cut(s)	523, 641
TspGWI	ACGGA	2 cut(s)	109, 539
TspRI	CASTG	2 cut(s)	496, 706
Tth111I	GACNNNGTC	2 cut(s)	164, 566
VpaK11BI	GGWCC	1 cut(s)	256
XapI	RAATTY	1 cut(s)	353
XceI	RCATGY	2 cut(s)	8, 99
XcmI	CCANNNNNNNNNTGG	1 cut(s)	182
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	2 cut(s)	206, 495
ZraI	GACGTC	3 cut(s)	163, 442, 666
Zsp2I	ATGCAT	2 cut(s)	6, 694

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.