RLG00000007890

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000716
Physical Location & Seq
Reverse (-)
22477823 .. 22479343
1521 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007890

Sequence Viewer

Length: 996 bp
ATGAAACTGACCGTTCACCTTGGCGGTCAATATCTTTGGGTGGATTGCGACCAAGGCTTTGTCTCATCAACCTACAAGCCTTCCCAATGCAAATCCACCCAATACAAGCTTGCCAACTTGATTACTATAGCCACCAACACTTGTGAACTCTCCCCAGACAACACTGTGGATCCCTTGTGCAATGACGGCAGAGGAGGTACGGTTGGTCAAGACGTCGTGTTGGGGTTCCATTCCACAGATGGGTCGAATCCTGGTCGGATTTTCTCCGCTCCAAACGTTCTCTTCGCTTGTGGTTTTACATCTCTCTTACAAGGCCTTGCCAATGGTGTGACGGGCATGGCTGGCCTTGGTAGGTTTAAAATTGGACTTCCATACCAACTTTCTACTGCTCTAGGCATCAAAAGAAAGTTCGCTATTTGTTTGAGCTCTTCAACAAGTTCAAACGGTGTGTACTTTATCGGCGTGAAGTCAATCAAGGTCAGCGGAAAGCTTATTCCGTCGTTAAACACCTCATTGCTAGCTATTGACGAAAGCGGGAATGGGGGCACGGGGATTAGCACAGTAGTTCCTTATACTGTTTTGGAGACCTCAATCTACAACGCCGTTGTGAATGCATTTATGAAGGAGCTCGAGATGAAGCACATCCCGAAAGTGGCATCTGTAGCGCCGTTCGGAGCATGCTTCAAAGCAAAGGACATTGCTTATTCACGGGCCGGACCGGTTGTGCCTCCGATTGATCTTGTGTTGCAGAGCGAGGGTGTGTACTGGAGGATTGTTGGAGCAAATTCGATGGTGCGTGTAAGCGATGAGGTGCTGTGTTTAGGGTTTATGGATGGCGGTCTAAATCCGAGGACTTCTATTATGATCGGAGGGCATCAGATTGAGGACAATCTATTGCAGCTGCTAATAGGCTTGGATTCAGCTCTTCACTCTTGTCCCGACAAACCAGCTGCGCCAACTTTAACTTTACATCCACTGCTTGATTACATCGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

332

Amino Acids

35.08

Weight (kDa)

6.58

Isoelectric Point (pI)

28.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 1 - 154 1.6e-25 Xylanase inhibitor N-terminal
TAXi_C PF14541 151 - 300 3.9e-50 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 216
AccBSI CCGCTC 1 cut(s) 269
AciI CCGC 5 cut(s) 24, 267, 483, 534, 837
AclI AACGTT 1 cut(s) 276
AclWI GGATC 2 cut(s) 164, 177
AcsI RAATTY 1 cut(s) 784
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 3 cut(s) 199, 452, 764
AfiI CCNNNNNNNGG 2 cut(s) 240, 652
AgeI ACCGGT 1 cut(s) 718
AgsI TTSAA 3 cut(s) 432, 441, 685
AjnI CCWGG 1 cut(s) 250
AluBI AGCT 8 cut(s) 109, 426, 490, 521, 628, 901, 923, 950
AluI AGCT 8 cut(s) 109, 426, 490, 521, 628, 901, 923, 950
Alw21I GWGCWC 2 cut(s) 428, 630
Alw26I GTCTC 2 cut(s) 67, 578
AlwI GGATC 2 cut(s) 164, 177
Ama87I CYCGRG 1 cut(s) 629
AoxI GGCC 3 cut(s) 313, 343, 711
ApeKI GCWGC 3 cut(s) 898, 901, 950
ApoI RAATTY 1 cut(s) 784
ArsI GACNNNNNNTTYG 2 cut(s) 41, 73
AsiGI ACCGGT 1 cut(s) 718
AspLEI GCGC 2 cut(s) 667, 955
AspS9I GGNCC 2 cut(s) 711, 716
AsuHPI GGTGA 1 cut(s) 8
AsuNHI GCTAGC 1 cut(s) 517
AvaI CYCGRG 1 cut(s) 629
AvaII GGWCC 1 cut(s) 716
BaeGI GKGCMC 1 cut(s) 548
BamHI GGATCC 1 cut(s) 169
BanII GRGCYC 2 cut(s) 428, 630
Bbv12I GWGCWC 2 cut(s) 428, 630
BbvI GCAGC 3 cut(s) 888, 910, 937
BccI CCATC 3 cut(s) 233, 784, 827
BceAI ACGGC 3 cut(s) 202, 587, 652
BciT130I CCWGG 1 cut(s) 252
BcoDI GTCTC 2 cut(s) 67, 578
BfaI CTAG 2 cut(s) 392, 518
BfmI CTRYAG 2 cut(s) 126, 660
BfoI RGCGCY 1 cut(s) 668
BisI GCNGC 3 cut(s) 899, 902, 951
BlsI GCNGC 3 cut(s) 900, 903, 952
Bme1390I CCNGG 1 cut(s) 252
Bme18I GGWCC 1 cut(s) 716
BmeT110I CYCGRG 1 cut(s) 629
BmgT120I GGNCC 2 cut(s) 711, 716
BmiI GGNNCC 2 cut(s) 171, 227
BmrFI CCNGG 1 cut(s) 252
BmsI GCATC 3 cut(s) 405, 665, 883
BmtI GCTAGC 1 cut(s) 521
BpmI CTGGAG 1 cut(s) 787
BsaHI GRCGYC 1 cut(s) 213
BsaI GGTCTC 1 cut(s) 578
BsaJI CCNNGG 4 cut(s) 19, 52, 346, 848
BsaWI WCCGGW 1 cut(s) 718
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 2 cut(s) 240, 652
Bse118I RCCGGY 1 cut(s) 718
Bse1I ACTGG 1 cut(s) 770
Bse3DI GCAATG 3 cut(s) 187, 512, 696
BseBI CCWGG 1 cut(s) 252
BseDI CCNNGG 4 cut(s) 19, 52, 346, 848
BseGI GGATG 3 cut(s) 642, 838, 970
BseLI CCNNNNNNNGG 2 cut(s) 240, 652
BseMI GCAATG 3 cut(s) 187, 512, 696
BseNI ACTGG 1 cut(s) 770
BseRI GAGGAG 1 cut(s) 207
BseSI GKGCMC 1 cut(s) 548
BseXI GCAGC 3 cut(s) 888, 910, 937
BshFI GGCC 3 cut(s) 315, 345, 713
BshTI ACCGGT 1 cut(s) 718
BsiHKAI GWGCWC 2 cut(s) 428, 630
BsiHKCI CYCGRG 1 cut(s) 629
BsiSI CCGG 2 cut(s) 714, 719
BslFI GGGAC 1 cut(s) 921
BslI CCNNNNNNNGG 2 cut(s) 240, 652
BsmAI GTCTC 2 cut(s) 67, 578
BsmFI GGGAC 1 cut(s) 921
BsmI GAATGC 1 cut(s) 616
BsnI GGCC 3 cut(s) 315, 345, 713
Bso31I GGTCTC 1 cut(s) 578
BsoBI CYCGRG 1 cut(s) 629
Bsp1286I GDGCHC 3 cut(s) 428, 548, 630
Bsp143I GATC 3 cut(s) 169, 736, 864
BspACI CCGC 5 cut(s) 24, 267, 483, 534, 837
BspANI GGCC 3 cut(s) 315, 345, 713
BspLI GGNNCC 2 cut(s) 171, 227
BspOI GCTAGC 1 cut(s) 521
BspPI GGATC 2 cut(s) 164, 177
BspQI GCTCTTC 2 cut(s) 433, 930
BspTNI GGTCTC 1 cut(s) 578
BsrBI CCGCTC 1 cut(s) 269
BsrDI GCAATG 3 cut(s) 187, 512, 696
BsrFI RCCGGY 1 cut(s) 718
BsrI ACTGG 1 cut(s) 770
BssAI RCCGGY 1 cut(s) 718
BssECI CCNNGG 4 cut(s) 19, 52, 346, 848
BssMI GATC 3 cut(s) 169, 736, 864
BssNI GRCGYC 1 cut(s) 213
BssT1I CCWWGG 3 cut(s) 19, 52, 346
Bst2UI CCWGG 1 cut(s) 252
Bst4CI ACNGT 6 cut(s) 13, 166, 202, 446, 562, 577
Bst6I CTCTTC 3 cut(s) 287, 433, 930
BstACI GRCGYC 1 cut(s) 213
BstC8I GCNNGC 4 cut(s) 111, 343, 519, 679
BstF5I GGATG 3 cut(s) 642, 838, 970
BstH2I RGCGCY 1 cut(s) 668
BstHHI GCGC 2 cut(s) 667, 955
BstKTI GATC 3 cut(s) 172, 739, 867
BstMAI GTCTC 2 cut(s) 67, 578
BstMBI GATC 3 cut(s) 169, 736, 864
BstMWI GCNNNNNNNGC 4 cut(s) 54, 186, 342, 662
BstNI CCWGG 1 cut(s) 252
BstNSI RCATGY 1 cut(s) 681
BstSCI CCNGG 1 cut(s) 250
BstSFI CTRYAG 2 cut(s) 126, 660
BstSLI GKGCMC 1 cut(s) 548
BstV1I GCAGC 3 cut(s) 888, 910, 937
BstX2I RGATCY 1 cut(s) 169
BstYI RGATCY 1 cut(s) 169
BsuRI GGCC 3 cut(s) 315, 345, 713
BtgZI GCGATG 1 cut(s) 819
BtsCI GGATG 3 cut(s) 642, 838, 970
BtsI GCAGTG 1 cut(s) 974
BtsIMutI CAGTG 2 cut(s) 162, 974
Cac8I GCNNGC 4 cut(s) 111, 343, 519, 679
CfoI GCGC 2 cut(s) 667, 955
Cfr10I RCCGGY 1 cut(s) 718
Cfr13I GGNCC 2 cut(s) 711, 716
CpoI CGGWCCG 1 cut(s) 716
Csp6I GTAC 3 cut(s) 198, 451, 763
CspAI ACCGGT 1 cut(s) 718
CspI CGGWCCG 1 cut(s) 716
CviAII CATG 2 cut(s) 337, 678
CviQI GTAC 3 cut(s) 198, 451, 763
DpnI GATC 3 cut(s) 171, 738, 866
DpnII GATC 3 cut(s) 169, 736, 864
DraI TTTAAA 1 cut(s) 358
Eam1104I CTCTTC 3 cut(s) 287, 433, 930
EarI CTCTTC 3 cut(s) 287, 433, 930
Ecl136II GAGCTC 2 cut(s) 426, 628
Eco130I CCWWGG 3 cut(s) 19, 52, 346
Eco147I AGGCCT 1 cut(s) 315
Eco24I GRGCYC 2 cut(s) 428, 630
Eco31I GGTCTC 1 cut(s) 578
Eco47I GGWCC 1 cut(s) 716
Eco53kI GAGCTC 2 cut(s) 426, 628
Eco88I CYCGRG 1 cut(s) 629
EcoICRI GAGCTC 2 cut(s) 426, 628
EcoRII CCWGG 1 cut(s) 250
EcoT14I CCWWGG 3 cut(s) 19, 52, 346
EcoT22I ATGCAT 1 cut(s) 616
EcoT38I GRGCYC 2 cut(s) 428, 630
ErhI CCWWGG 3 cut(s) 19, 52, 346
FaeI CATG 2 cut(s) 340, 681
FaiI YATR 8 cut(s) 128, 338, 373, 573, 620, 679, 830, 863
FaqI GGGAC 1 cut(s) 921
FatI CATG 2 cut(s) 336, 677
FauI CCCGC 1 cut(s) 527
Fnu4HI GCNGC 3 cut(s) 899, 902, 951
FokI GGATG 3 cut(s) 629, 845, 957
FriOI GRGCYC 2 cut(s) 428, 630
Fsp4HI GCNGC 3 cut(s) 899, 902, 951
FspBI CTAG 2 cut(s) 392, 518
GlaI GCGC 2 cut(s) 666, 954
GluI GCNGC 3 cut(s) 899, 902, 951
GsuI CTGGAG 1 cut(s) 787
HaeII RGCGCY 1 cut(s) 668
HaeIII GGCC 3 cut(s) 315, 345, 713
HapII CCGG 2 cut(s) 714, 719
HhaI GCGC 2 cut(s) 667, 955
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 2 cut(s) 340, 681
Hin6I GCGC 2 cut(s) 665, 953
HinP1I GCGC 2 cut(s) 665, 953
HindIII AAGCTT 2 cut(s) 107, 488
HinfI GANTC 2 cut(s) 247, 917
HpaII CCGG 2 cut(s) 714, 719
HphI GGTGA 1 cut(s) 8
Hpy166II GTNNAC 4 cut(s) 16, 146, 451, 763
Hpy188I TCNGA 6 cut(s) 258, 674, 732, 849, 869, 879
Hpy188III TCNNGA 4 cut(s) 209, 631, 646, 938
Hpy8I GTNNAC 4 cut(s) 16, 146, 451, 763
Hpy99I CGWCG 2 cut(s) 218, 502
HpyAV CCTTC 2 cut(s) 90, 616
HpyCH4III ACNGT 6 cut(s) 13, 166, 202, 446, 562, 577
HpyCH4IV ACGT 2 cut(s) 213, 276
HpyCH4V TGCA 5 cut(s) 90, 180, 614, 748, 898
HpyF10VI GCNNNNNNNGC 4 cut(s) 54, 186, 342, 662
HpySE526I ACGT 2 cut(s) 213, 276
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 2 cut(s) 340, 681
HspAI GCGC 2 cut(s) 665, 953
Kzo9I GATC 3 cut(s) 169, 736, 864
LguI GCTCTTC 2 cut(s) 433, 930
LmnI GCTCC 4 cut(s) 274, 625, 674, 779
LpnPI CCDG 8 cut(s) 168, 237, 264, 327, 727, 732, 751, 960
Lsp1109I GCAGC 3 cut(s) 888, 910, 937
LweI GCATC 3 cut(s) 405, 665, 883
MaeI CTAG 2 cut(s) 392, 518
MaeII ACGT 2 cut(s) 213, 276
MaeIII GTNAC 1 cut(s) 328
MalI GATC 3 cut(s) 171, 738, 866
MbiI CCGCTC 1 cut(s) 269
MboI GATC 3 cut(s) 169, 736, 864
MboII GAAGA 3 cut(s) 274, 420, 917
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 3 cut(s) 428, 548, 630
MluCI AATT 2 cut(s) 360, 784
MmeI TCCRAC 2 cut(s) 236, 757
Mph1103I ATGCAT 1 cut(s) 616
MseI TTAA 3 cut(s) 357, 503, 962
MspA1I CMGCKG 3 cut(s) 483, 901, 950
MspI CCGG 2 cut(s) 714, 719
MspR9I CCNGG 1 cut(s) 252
Mva1269I GAATGC 1 cut(s) 616
MvaI CCWGG 1 cut(s) 252
MwoI GCNNNNNNNGC 4 cut(s) 54, 186, 342, 662
NdeII GATC 3 cut(s) 169, 736, 864
NheI GCTAGC 1 cut(s) 517
NlaIII CATG 2 cut(s) 340, 681
NlaIV GGNNCC 2 cut(s) 171, 227
NmuCI GTSAC 1 cut(s) 328
NsiI ATGCAT 1 cut(s) 616
NspI RCATGY 1 cut(s) 681
PaeI GCATGC 1 cut(s) 681
PaeR7I CTCGAG 1 cut(s) 629
PceI AGGCCT 1 cut(s) 315
PciSI GCTCTTC 2 cut(s) 433, 930
PctI GAATGC 1 cut(s) 616
PfeI GAWTC 2 cut(s) 247, 917
PinAI ACCGGT 1 cut(s) 718
PkrI GCNGC 3 cut(s) 900, 903, 952
Psp124BI GAGCTC 2 cut(s) 428, 630
Psp1406I AACGTT 1 cut(s) 276
Psp6I CCWGG 1 cut(s) 250
PspGI CCWGG 1 cut(s) 250
PspN4I GGNNCC 2 cut(s) 171, 227
PspPI GGNCC 2 cut(s) 711, 716
PsuI RGATCY 1 cut(s) 169
PvuII CAGCTG 2 cut(s) 901, 950
RsaI GTAC 3 cut(s) 199, 452, 764
RsaNI GTAC 3 cut(s) 198, 451, 763
Rsr2I CGGWCCG 1 cut(s) 716
RsrII CGGWCCG 1 cut(s) 716
SacI GAGCTC 2 cut(s) 428, 630
SapI GCTCTTC 2 cut(s) 433, 930
SaqAI TTAA 3 cut(s) 357, 503, 962
SatI GCNGC 3 cut(s) 899, 902, 951
Sau3AI GATC 3 cut(s) 169, 736, 864
Sau96I GGNCC 2 cut(s) 711, 716
ScrFI CCNGG 1 cut(s) 252
SduI GDGCHC 3 cut(s) 428, 548, 630
SfaNI GCATC 3 cut(s) 405, 665, 883
SfcI CTRYAG 2 cut(s) 126, 660
Sfr274I CTCGAG 1 cut(s) 629
SinI GGWCC 1 cut(s) 716
SlaI CTCGAG 1 cut(s) 629
SmlI CTYRAG 1 cut(s) 629
SmoI CTYRAG 1 cut(s) 629
SphI GCATGC 1 cut(s) 681
Sse9I AATT 2 cut(s) 360, 784
SseBI AGGCCT 1 cut(s) 315
SsiI CCGC 5 cut(s) 24, 267, 483, 534, 837
SspMI CTAG 2 cut(s) 392, 518
SstI GAGCTC 2 cut(s) 428, 630
StuI AGGCCT 1 cut(s) 315
StyD4I CCNGG 1 cut(s) 250
StyI CCWWGG 3 cut(s) 19, 52, 346
TaaI ACNGT 6 cut(s) 13, 166, 202, 446, 562, 577
TaiI ACGT 2 cut(s) 216, 279
TaqI TCGA 4 cut(s) 245, 630, 788, 990
TasI AATT 2 cut(s) 360, 784
TatI WGTACW 2 cut(s) 450, 762
TfiI GAWTC 2 cut(s) 247, 917
Tru1I TTAA 3 cut(s) 357, 503, 962
Tru9I TTAA 3 cut(s) 357, 503, 962
TscAI CASTG 2 cut(s) 169, 981
TseFI GTSAC 1 cut(s) 328
TseI GCWGC 3 cut(s) 898, 901, 950
Tsp45I GTSAC 1 cut(s) 328
TspDTI ATGAA 3 cut(s) 17, 635, 650
TspGWI ACGGA 1 cut(s) 486
TspRI CASTG 2 cut(s) 169, 981
VpaK11BI GGWCC 1 cut(s) 716
XapI RAATTY 1 cut(s) 784
XceI RCATGY 1 cut(s) 681
XcmI CCANNNNNNNNNTGG 1 cut(s) 236
XhoI CTCGAG 1 cut(s) 629
XspI CTAG 2 cut(s) 392, 518
ZraI GACGTC 1 cut(s) 214
Zsp2I ATGCAT 1 cut(s) 616
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.