Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0000716

Physical Location & Seq

Genomic Coordinates Forward (+)

11712345 .. 11713133

Gene Structure 789 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g15920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 789 bp

ATGGCTGGTCTCGGCAGGGCTAAAATCGGGCTTCCATCCCAATTCGCCTCCGCTTTTAGTTTCCATAGAAAATTCGCTTTTTGCTTGAGCTCCTCAACCAGTTCAAATGGTGTCGTTTTCTACGGGAACGGGCCTTATGTGTTGAATCACAACGTTTTGTCGGAGTCACTTGTTTACACTCCATTGCTCCTCTACCATTACTCCACCGGACCCGCTTACATGGAAGGCCAAGCTTCTTCAGACTATTTCATTAACGTAAAGTCCATCAAAATCAACGACGAGACTGTGCCGTTAAACACTTCCTTGCTAGTCATTAAAGAATACGGCTACGGAGGCACAAAGATTAGCACCGTCAACCCTTACACGGTGTTGGAGAACACAATCTACACCGCGTTTGTGGATTTGTTTCTCAAAGAAGTCCCTGCTCACATTCCTAGGGTTGCACCAGTGGAGTCTTTCGGAGCTTGCTTCAACTCAACCCGCATCGGAAGGACACGTGTCGGGCCAGCTGTGCCTACCATCGACTTTGTGCTGCAGAGTGGGAGTGTATACTGGAGGTTCTTGGGAGCAAACTCAATGGTGCAAGTGAACGAGGAGGTTTTGTGTTTAGGGTTTGTGGATGCTGGGTTGAGCCCTAGTAACCCAATGACCTCAATTGTGATCGGAGGGCTTCAGTTAGAGGAAAATTTTTTGCAGTTTGATTTGGCTGCGTCTAGGCTTGGGTTCTGTAACTCGCTCTTGTCTGGACCGACAACTTGTGCTGATTTCAACTTCACATCTATTGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

263

Amino Acids

28.37

Weight (kDa)

5.78

Isoelectric Point (pI)

32.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_N	PF14543	1 - 43	4.5e-10	Xylanase inhibitor N-terminal
TAXi_C	PF14541	81 - 242	6.2e-56	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03220 AT1G03230
fragaria_vesca	FvH4_2g23780 FvH4_4g14611 FvH4_4g14611 FvH4_4g14640 FvH4_4g14660 FvH4_4g14670
malus_domestica	MD11G1287900.v1.1 MD13G1184500.v1.1 MD13G1184800.v1.1 MD13G1184900.v1.1 MD16G1185000.v1.1 MD16G1185100.v1.1 MD16G1185300.v1.1
prunus_persica	Prupe.1G152100_v2.0.a1 Prupe.1G152200_v2.0.a1 Prupe.8G243100_v2.0.a1
pyrus_communis	pycom11g25550 pycom13g15900 pycom13g15920 pycom16g15520
rosa_chinensis	RchiOBHm_Chr4g0417891 RchiOBHm_Chr4g0417921 RchiOBHm_Chr4g0417961 RchiOBHm_Chr4g0417971 RchiOBHm_Chr4g0417981 RchiOBHm_Chr6g0291301
rosa_laevigata	RLG00000007886 RLG00000007887 RLG00000007888 RLG00000007889 RLG00000007890 RLG00000012125
rosa_multiflora	Rmu_co8285195.1_g000001 Rmu_sc0000032.1_g000028
rosa_roxburghii	Rroxscaffold_160G00433800 Rroxscaffold_4G00327990 Rroxscaffold_5G00361320 Rroxscaffold_5G00361330 Rroxscaffold_5G00361340 Rroxscaffold_5G00361370 Rroxscaffold_5G00361380
rosa_rugosa	Rorug04G0150200 Rorug04G0150300 Rorug04G0150900 Rorug04G0151100 Rorug06G0218600
rosa_samantha	Rh4AG212500 Rh4AG212600 Rh4BG218100 Rh4BG218200 Rh4BG218300 Rh4BG218400 Rh4BG218500 Rh4CG223500 Rh4CG224100 Rh4CG224200 Rh4CG224500 Rh4DG210500 Rh4DG210800 Rh4DG211000 Rh4DG211100 Rh6AG330600 Rh6BG337500 Rh6BG337600 Rh6CG343900 Rh6DG330900
rosa_wichuraiana	Rw4G018040 Rw4G018050 Rw4G018060 Rw4G018070 Rw6G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	549
AccII	CGCG	1 cut(s)	392
AciI	CCGC	4 cut(s)	51, 213, 390, 481
AclI	AACGTT	1 cut(s)	153
AcsI	RAATTY	2 cut(s)	71, 685
AcuI	CTGAAG	2 cut(s)	222, 656
AcvI	CACGTG	1 cut(s)	497
AfiI	CCNNNNNNNGG	1 cut(s)	364
AflIII	ACRYGT	2 cut(s)	494, 496
AgsI	TTSAA	4 cut(s)	105, 145, 472, 769
AluBI	AGCT	4 cut(s)	90, 233, 464, 509
AluI	AGCT	4 cut(s)	90, 233, 464, 509
Alw21I	GWGCWC	1 cut(s)	92
Alw26I	GTCTC	2 cut(s)	14, 275
AoxI	GGCC	3 cut(s)	131, 226, 503
ApeKI	GCWGC	2 cut(s)	532, 707
ApoI	RAATTY	2 cut(s)	71, 685
AspA2I	CCTAGG	1 cut(s)	434
AspS9I	GGNCC	4 cut(s)	131, 209, 503, 746
AvaII	GGWCC	2 cut(s)	209, 746
AvrII	CCTAGG	1 cut(s)	434
BanII	GRGCYC	2 cut(s)	92, 635
BbrPI	CACGTG	1 cut(s)	497
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	519, 694
BccI	CCATC	3 cut(s)	43, 272, 527
BceAI	ACGGC	2 cut(s)	274, 340
BcoDI	GTCTC	2 cut(s)	14, 275
BfaI	CTAG	4 cut(s)	308, 435, 636, 714
BfmI	CTRYAG	1 cut(s)	533
BisI	GCNGC	2 cut(s)	533, 708
BlnI	CCTAGG	1 cut(s)	434
BlsI	GCNGC	2 cut(s)	534, 709
Bme18I	GGWCC	2 cut(s)	209, 746
BmgT120I	GGNCC	4 cut(s)	131, 209, 503, 746
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	2 cut(s)	492, 610
BoxI	GACNNNNGTC	1 cut(s)	497
BpmI	CTGGAG	1 cut(s)	574
BpuEI	CTTGAG	1 cut(s)	106
BsaAI	YACGTR	1 cut(s)	497
BsaI	GGTCTC	1 cut(s)	14
BsaJI	CCNNGG	1 cut(s)	434
BsaWI	WCCGGW	1 cut(s)	206
BsaXI	ACNNNNNCTCC	4 cut(s)	185, 215, 587, 617
Bsc4I	CCNNNNNNNGG	1 cut(s)	364
Bse1I	ACTGG	3 cut(s)	99, 446, 557
Bse3DI	GCAATG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	434
BseGI	GGATG	2 cut(s)	35, 625
BseLI	CCNNNNNNNGG	1 cut(s)	364
BseMI	GCAATG	1 cut(s)	182
BseNI	ACTGG	3 cut(s)	99, 446, 557
BseRI	GAGGAG	3 cut(s)	82, 179, 608
BseXI	GCAGC	2 cut(s)	519, 694
BseYI	CCCAGC	1 cut(s)	623
Bsh1236I	CGCG	1 cut(s)	392
BshFI	GGCC	3 cut(s)	133, 228, 505
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	207
BslFI	GGGAC	1 cut(s)	404
BslI	CCNNNNNNNGG	1 cut(s)	364
BsmAI	GTCTC	2 cut(s)	14, 275
BsmFI	GGGAC	1 cut(s)	404
BsnI	GGCC	3 cut(s)	133, 228, 505
Bso31I	GGTCTC	1 cut(s)	14
Bsp1286I	GDGCHC	2 cut(s)	92, 635
Bsp143I	GATC	1 cut(s)	660
BspACI	CCGC	4 cut(s)	51, 213, 390, 481
BspANI	GGCC	3 cut(s)	133, 228, 505
BspFNI	CGCG	1 cut(s)	392
BspLI	GGNNCC	1 cut(s)	211
BspMAI	CTGCAG	1 cut(s)	537
BspTNI	GGTCTC	1 cut(s)	14
BsrDI	GCAATG	1 cut(s)	182
BsrI	ACTGG	3 cut(s)	99, 446, 557
BssECI	CCNNGG	1 cut(s)	434
BssMI	GATC	1 cut(s)	660
BssNAI	GTATAC	1 cut(s)	550
BssT1I	CCWWGG	1 cut(s)	434
Bst1107I	GTATAC	1 cut(s)	550
Bst4CI	ACNGT	3 cut(s)	286, 352, 367
BstBAI	YACGTR	1 cut(s)	497
BstC8I	GCNNGC	2 cut(s)	466, 507
BstDEI	CTNAG	1 cut(s)	786
BstF5I	GGATG	2 cut(s)	35, 625
BstFNI	CGCG	1 cut(s)	392
BstKTI	GATC	1 cut(s)	663
BstMAI	GTCTC	2 cut(s)	14, 275
BstMBI	GATC	1 cut(s)	660
BstMWI	GCNNNNNNNGC	2 cut(s)	333, 511
BstPAI	GACNNNNGTC	1 cut(s)	497
BstSFI	CTRYAG	1 cut(s)	533
BstUI	CGCG	1 cut(s)	392
BstV1I	GCAGC	2 cut(s)	519, 694
BstZ17I	GTATAC	1 cut(s)	550
BsuRI	GGCC	3 cut(s)	133, 228, 505
BtsCI	GGATG	2 cut(s)	35, 625
BtsIMutI	CAGTG	1 cut(s)	453
Cac8I	GCNNGC	2 cut(s)	466, 507
Cfr13I	GGNCC	4 cut(s)	131, 209, 503, 746
CseI	GACGC	1 cut(s)	699
CviAII	CATG	1 cut(s)	220
DdeI	CTNAG	1 cut(s)	786
DpnI	GATC	1 cut(s)	662
DpnII	GATC	1 cut(s)	660
Ecl136II	GAGCTC	1 cut(s)	90
Eco130I	CCWWGG	1 cut(s)	434
Eco24I	GRGCYC	2 cut(s)	92, 635
Eco31I	GGTCTC	1 cut(s)	14
Eco47I	GGWCC	2 cut(s)	209, 746
Eco53kI	GAGCTC	1 cut(s)	90
Eco57I	CTGAAG	2 cut(s)	222, 656
Eco72I	CACGTG	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	434
EcoT38I	GRGCYC	2 cut(s)	92, 635
ErhI	CCWWGG	1 cut(s)	434
FaeI	CATG	1 cut(s)	223
FaiI	YATR	4 cut(s)	66, 138, 221, 550
FaqI	GGGAC	1 cut(s)	404
FatI	CATG	1 cut(s)	219
FauI	CCCGC	2 cut(s)	220, 488
FblI	GTMKAC	1 cut(s)	549
Fnu4HI	GCNGC	2 cut(s)	533, 708
FokI	GGATG	2 cut(s)	22, 632
FriOI	GRGCYC	2 cut(s)	92, 635
Fsp4HI	GCNGC	2 cut(s)	533, 708
FspBI	CTAG	4 cut(s)	308, 435, 636, 714
GluI	GCNGC	2 cut(s)	533, 708
GsaI	CCCAGC	1 cut(s)	627
GsuI	CTGGAG	1 cut(s)	574
HaeIII	GGCC	3 cut(s)	133, 228, 505
HapII	CCGG	1 cut(s)	207
HgaI	GACGC	1 cut(s)	699
Hin1II	CATG	1 cut(s)	223
HincII	GTYRAC	1 cut(s)	355
HindII	GTYRAC	1 cut(s)	355
HindIII	AAGCTT	1 cut(s)	231
HinfI	GANTC	3 cut(s)	145, 164, 452
HpaII	CCGG	1 cut(s)	207
Hpy166II	GTNNAC	4 cut(s)	175, 355, 550, 589
Hpy188I	TCNGA	5 cut(s)	163, 241, 461, 488, 665
Hpy188III	TCNNGA	1 cut(s)	744
Hpy8I	GTNNAC	4 cut(s)	175, 355, 550, 589
Hpy99I	CGWCG	1 cut(s)	281
HpyAV	CCTTC	2 cut(s)	218, 483
HpyCH4III	ACNGT	3 cut(s)	286, 352, 367
HpyCH4IV	ACGT	3 cut(s)	153, 255, 496
HpyCH4V	TGCA	4 cut(s)	443, 535, 583, 694
HpyF10VI	GCNNNNNNNGC	2 cut(s)	333, 511
HpyF3I	CTNAG	1 cut(s)	786
HpySE526I	ACGT	3 cut(s)	153, 255, 496
Hsp92II	CATG	1 cut(s)	223
Kzo9I	GATC	1 cut(s)	660
LmnI	GCTCC	4 cut(s)	95, 192, 461, 566
LpnPI	CCDG	8 cut(s)	112, 220, 435, 459, 519, 538, 609, 729
Lsp1109I	GCAGC	2 cut(s)	519, 694
LweI	GCATC	2 cut(s)	492, 610
MaeI	CTAG	4 cut(s)	308, 435, 636, 714
MaeII	ACGT	3 cut(s)	153, 255, 496
MaeIII	GTNAC	3 cut(s)	165, 638, 728
MalI	GATC	1 cut(s)	662
MboI	GATC	1 cut(s)	660
MboII	GAAGA	1 cut(s)	228
MfeI	CAATTG	1 cut(s)	654
MhlI	GDGCHC	2 cut(s)	92, 635
MluCI	AATT	4 cut(s)	41, 71, 654, 685
MlyI	GAGTC	2 cut(s)	173, 461
MmeI	TCCRAC	2 cut(s)	141, 351
MseI	TTAA	3 cut(s)	252, 293, 315
MspA1I	CMGCKG	1 cut(s)	509
MspI	CCGG	1 cut(s)	207
MunI	CAATTG	1 cut(s)	654
MvnI	CGCG	1 cut(s)	392
MwoI	GCNNNNNNNGC	2 cut(s)	333, 511
NdeII	GATC	1 cut(s)	660
NlaIII	CATG	1 cut(s)	223
NlaIV	GGNNCC	1 cut(s)	211
NmuCI	GTSAC	1 cut(s)	165
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	534, 709
PleI	GAGTC	2 cut(s)	172, 460
PmaCI	CACGTG	1 cut(s)	497
PmlI	CACGTG	1 cut(s)	497
PpsI	GAGTC	2 cut(s)	172, 460
Ppu21I	YACGTR	1 cut(s)	497
PshAI	GACNNNNGTC	1 cut(s)	497
Psp124BI	GAGCTC	1 cut(s)	92
Psp1406I	AACGTT	1 cut(s)	153
PspCI	CACGTG	1 cut(s)	497
PspFI	CCCAGC	1 cut(s)	623
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	4 cut(s)	131, 209, 503, 746
PsrI	GAACNNNNNNTAC	2 cut(s)	368, 400
PstI	CTGCAG	1 cut(s)	537
PvuII	CAGCTG	1 cut(s)	509
SacI	GAGCTC	1 cut(s)	92
SaqAI	TTAA	3 cut(s)	252, 293, 315
SatI	GCNGC	2 cut(s)	533, 708
Sau3AI	GATC	1 cut(s)	660
Sau96I	GGNCC	4 cut(s)	131, 209, 503, 746
SchI	GAGTC	2 cut(s)	173, 461
SduI	GDGCHC	2 cut(s)	92, 635
SfaNI	GCATC	2 cut(s)	492, 610
SfcI	CTRYAG	1 cut(s)	533
SinI	GGWCC	2 cut(s)	209, 746
SmlI	CTYRAG	1 cut(s)	85
SmoI	CTYRAG	1 cut(s)	85
Sse9I	AATT	4 cut(s)	41, 71, 654, 685
SsiI	CCGC	4 cut(s)	51, 213, 390, 481
SspMI	CTAG	4 cut(s)	308, 435, 636, 714
SstI	GAGCTC	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	434
TaaI	ACNGT	3 cut(s)	286, 352, 367
TaiI	ACGT	3 cut(s)	156, 258, 499
TaqI	TCGA	1 cut(s)	522
TaqII	GACCGA	1 cut(s)	763
TasI	AATT	4 cut(s)	41, 71, 654, 685
TfiI	GAWTC	1 cut(s)	145
Tru1I	TTAA	3 cut(s)	252, 293, 315
Tru9I	TTAA	3 cut(s)	252, 293, 315
TscAI	CASTG	1 cut(s)	453
TseFI	GTSAC	1 cut(s)	165
TseI	GCWGC	2 cut(s)	532, 707
Tsp45I	GTSAC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	238
TspGWI	ACGGA	1 cut(s)	345
TspRI	CASTG	1 cut(s)	453
VpaK11BI	GGWCC	2 cut(s)	209, 746
XapI	RAATTY	2 cut(s)	71, 685
XmaJI	CCTAGG	1 cut(s)	434
XmiI	GTMKAC	1 cut(s)	549
XspI	CTAG	4 cut(s)	308, 435, 636, 714

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.