Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0000716

Physical Location & Seq

Genomic Coordinates Forward (+)

22470775 .. 22472638

Gene Structure 1864 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007888

Sequence Viewer

CDS Protein Promoter (2k)

Length: 393 bp

ATGGTTCATGCATTTGTGAAAGGACTGGCTCAGATTCACCCTCGTATTCAAGTACCAAGAGTGACACCTATAGCACCATTCAGAGCACGCTTCAACACATCGAAGCTCAGTAGCAGGGCGACGGATGTGATGGACCGTCCGCCTGGCATAGACCTTATGTTACAAAGGGAGAGTGTGTACTGGACGGTTTTTGCCCCAGCCTATTTGGTGCCGGTCGAGAAGGACGTGTTGTGCTTCAGGTTTGTTGATGGGGGTGTAAAACCAAGGACTTTTATCGTGATTGAAGGCCATAAGTTGGAGGATAATCTTCTACAGTTTGATTTGGCTAACAAGAGGATTGGGTTCAACACCTTACTGAGTTGTGCTAACTTCAACTTCACGTCTCATGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

131

Amino Acids

14.74

Weight (kDa)

9.62

Isoelectric Point (pI)

34.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	4 - 116	1.9e-23	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03220 AT1G03230
fragaria_vesca	FvH4_2g23780 FvH4_4g14611 FvH4_4g14611 FvH4_4g14640 FvH4_4g14660 FvH4_4g14670
malus_domestica	MD11G1287900.v1.1 MD13G1184500.v1.1 MD13G1184800.v1.1 MD13G1184900.v1.1 MD16G1185000.v1.1 MD16G1185100.v1.1 MD16G1185300.v1.1
prunus_persica	Prupe.1G152100_v2.0.a1 Prupe.1G152200_v2.0.a1 Prupe.8G243100_v2.0.a1
pyrus_communis	pycom11g25550 pycom13g15900 pycom13g15920 pycom16g15520
rosa_chinensis	RchiOBHm_Chr4g0417891 RchiOBHm_Chr4g0417921 RchiOBHm_Chr4g0417961 RchiOBHm_Chr4g0417971 RchiOBHm_Chr4g0417981 RchiOBHm_Chr6g0291301
rosa_laevigata	RLG00000007886 RLG00000007887 RLG00000007888 RLG00000007889 RLG00000007890 RLG00000012125
rosa_multiflora	Rmu_co8285195.1_g000001 Rmu_sc0000032.1_g000028
rosa_roxburghii	Rroxscaffold_160G00433800 Rroxscaffold_4G00327990 Rroxscaffold_5G00361320 Rroxscaffold_5G00361330 Rroxscaffold_5G00361340 Rroxscaffold_5G00361370 Rroxscaffold_5G00361380
rosa_rugosa	Rorug04G0150200 Rorug04G0150300 Rorug04G0150900 Rorug04G0151100 Rorug06G0218600
rosa_samantha	Rh4AG212500 Rh4AG212600 Rh4BG218100 Rh4BG218200 Rh4BG218300 Rh4BG218400 Rh4BG218500 Rh4CG223500 Rh4CG224100 Rh4CG224200 Rh4CG224500 Rh4DG210500 Rh4DG210800 Rh4DG211000 Rh4DG211100 Rh6AG330600 Rh6BG337500 Rh6BG337600 Rh6CG343900 Rh6DG330900
rosa_wichuraiana	Rw4G018040 Rw4G018050 Rw4G018060 Rw4G018070 Rw6G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	208
AccB7I	CCANNNNNTGG	1 cut(s)	295
AciI	CCGC	1 cut(s)	140
AcuI	CTGAAG	1 cut(s)	220
AfaI	GTAC	2 cut(s)	54, 179
AfiI	CCNNNNNNNGG	1 cut(s)	295
AflIII	ACRYGT	1 cut(s)	225
AgsI	TTSAA	5 cut(s)	50, 94, 284, 346, 373
AjiI	CACGTC	2 cut(s)	226, 381
AjnI	CCWGG	1 cut(s)	142
AluBI	AGCT	1 cut(s)	106
AluI	AGCT	1 cut(s)	106
Alw21I	GWGCWC	1 cut(s)	88
Alw26I	GTCTC	1 cut(s)	387
AoxI	GGCC	1 cut(s)	286
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	1 cut(s)	29
AvaII	GGWCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	208
Bbv12I	GWGCWC	1 cut(s)	88
BccI	CCATC	2 cut(s)	124, 242
BciT130I	CCWGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	387
BfmI	CTRYAG	2 cut(s)	69, 311
Bme1390I	CCNGG	1 cut(s)	144
Bme18I	GGWCC	1 cut(s)	133
BmgBI	CACGTC	2 cut(s)	226, 381
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	210
BmrFI	CCNGG	1 cut(s)	144
BsaJI	CCNNGG	1 cut(s)	263
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	1 cut(s)	295
Bse118I	RCCGGY	1 cut(s)	211
Bse1I	ACTGG	2 cut(s)	30, 185
BseBI	CCWGG	1 cut(s)	144
BseDI	CCNNGG	1 cut(s)	263
BseGI	GGATG	1 cut(s)	130
BseLI	CCNNNNNNNGG	1 cut(s)	295
BseMII	CTCAG	3 cut(s)	44, 121, 347
BseNI	ACTGG	2 cut(s)	30, 185
BseYI	CCCAGC	1 cut(s)	196
Bsh1285I	CGRYCG	1 cut(s)	216
BshFI	GGCC	1 cut(s)	288
BshNI	GGYRCC	1 cut(s)	208
BsiEI	CGRYCG	1 cut(s)	216
BsiHKAI	GWGCWC	1 cut(s)	88
BsiSI	CCGG	1 cut(s)	212
BslI	CCNNNNNNNGG	1 cut(s)	295
BsmAI	GTCTC	1 cut(s)	387
BsmBI	CGTCTC	1 cut(s)	387
BsnI	GGCC	1 cut(s)	288
Bsp1286I	GDGCHC	1 cut(s)	88
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	1 cut(s)	288
BspCNI	CTCAG	3 cut(s)	43, 120, 348
BspLI	GGNNCC	1 cut(s)	210
BspT107I	GGYRCC	1 cut(s)	208
BsrFI	RCCGGY	1 cut(s)	211
BsrI	ACTGG	2 cut(s)	30, 185
BssAI	RCCGGY	1 cut(s)	211
BssECI	CCNNGG	1 cut(s)	263
BssT1I	CCWWGG	1 cut(s)	263
Bst2UI	CCWGG	1 cut(s)	144
Bst4CI	ACNGT	3 cut(s)	137, 187, 315
BstC8I	GCNNGC	1 cut(s)	88
BstDEI	CTNAG	3 cut(s)	30, 107, 356
BstF5I	GGATG	1 cut(s)	130
BstMAI	GTCTC	1 cut(s)	387
BstMCI	CGRYCG	1 cut(s)	216
BstNI	CCWGG	1 cut(s)	144
BstSCI	CCNGG	1 cut(s)	142
BstSFI	CTRYAG	2 cut(s)	69, 311
BsuRI	GGCC	1 cut(s)	288
BtrI	CACGTC	2 cut(s)	226, 381
BtsCI	GGATG	1 cut(s)	130
Cac8I	GCNNGC	1 cut(s)	88
Cfr10I	RCCGGY	1 cut(s)	211
Cfr13I	GGNCC	1 cut(s)	133
Csp6I	GTAC	2 cut(s)	53, 178
CviAII	CATG	2 cut(s)	8, 386
CviJI	RGCY	5 cut(s)	29, 106, 200, 288, 326
CviKI_1	RGCY	5 cut(s)	29, 106, 200, 288, 326
CviQI	GTAC	2 cut(s)	53, 178
DdeI	CTNAG	3 cut(s)	30, 107, 356
EciI	GGCGGA	1 cut(s)	129
Eco130I	CCWWGG	1 cut(s)	263
Eco47I	GGWCC	1 cut(s)	133
Eco57I	CTGAAG	1 cut(s)	220
EcoRII	CCWGG	1 cut(s)	142
EcoT14I	CCWWGG	1 cut(s)	263
EcoT22I	ATGCAT	1 cut(s)	13
ErhI	CCWWGG	1 cut(s)	263
Esp3I	CGTCTC	1 cut(s)	387
FaeI	CATG	2 cut(s)	11, 389
FaiI	YATR	6 cut(s)	9, 71, 149, 158, 291, 387
FatI	CATG	2 cut(s)	7, 385
FokI	GGATG	1 cut(s)	137
GsaI	CCCAGC	1 cut(s)	200
HaeIII	GGCC	1 cut(s)	288
HapII	CCGG	1 cut(s)	212
Hin1II	CATG	2 cut(s)	11, 389
HinfI	GANTC	1 cut(s)	34
HpaII	CCGG	1 cut(s)	212
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	178
Hpy188I	TCNGA	2 cut(s)	33, 83
Hpy188III	TCNNGA	2 cut(s)	217, 277
Hpy8I	GTNNAC	1 cut(s)	178
Hpy99I	CGWCG	1 cut(s)	124
HpyAV	CCTTC	2 cut(s)	214, 278
HpyCH4III	ACNGT	3 cut(s)	137, 187, 315
HpyCH4IV	ACGT	2 cut(s)	225, 380
HpyCH4V	TGCA	1 cut(s)	11
HpyF3I	CTNAG	3 cut(s)	30, 107, 356
HpySE526I	ACGT	2 cut(s)	225, 380
Hsp92II	CATG	2 cut(s)	11, 389
LpnPI	CCDG	8 cut(s)	11, 100, 129, 156, 166, 210, 223, 225
MaeII	ACGT	2 cut(s)	225, 380
MaeIII	GTNAC	2 cut(s)	61, 159
MboII	GAAGA	1 cut(s)	299
MhlI	GDGCHC	1 cut(s)	88
MmeI	TCCRAC	1 cut(s)	276
MnlI	CCTC	3 cut(s)	51, 292, 327
Mph1103I	ATGCAT	1 cut(s)	13
MspI	CCGG	1 cut(s)	212
MspR9I	CCNGG	1 cut(s)	144
MvaI	CCWGG	1 cut(s)	144
NlaIII	CATG	2 cut(s)	11, 389
NlaIV	GGNNCC	1 cut(s)	210
NmuCI	GTSAC	1 cut(s)	61
NsiI	ATGCAT	1 cut(s)	13
PcsI	WCGNNNNNNNCGW	1 cut(s)	222
PfeI	GAWTC	1 cut(s)	34
PflMI	CCANNNNNTGG	1 cut(s)	295
Psp6I	CCWGG	1 cut(s)	142
PspFI	CCCAGC	1 cut(s)	196
PspGI	CCWGG	1 cut(s)	142
PspN4I	GGNNCC	1 cut(s)	210
PspPI	GGNCC	1 cut(s)	133
RsaI	GTAC	2 cut(s)	54, 179
RsaNI	GTAC	2 cut(s)	53, 178
Sau96I	GGNCC	1 cut(s)	133
ScrFI	CCNGG	1 cut(s)	144
SduI	GDGCHC	1 cut(s)	88
SetI	ASST	7 cut(s)	70, 108, 156, 228, 242, 353, 383
SfcI	CTRYAG	2 cut(s)	69, 311
SinI	GGWCC	1 cut(s)	133
SsiI	CCGC	1 cut(s)	140
StyD4I	CCNGG	1 cut(s)	142
StyI	CCWWGG	1 cut(s)	263
TaaI	ACNGT	3 cut(s)	137, 187, 315
TaiI	ACGT	2 cut(s)	228, 383
TaqI	TCGA	2 cut(s)	101, 216
TatI	WGTACW	1 cut(s)	177
TfiI	GAWTC	1 cut(s)	34
TseFI	GTSAC	1 cut(s)	61
Tsp45I	GTSAC	1 cut(s)	61
TspGWI	ACGGA	1 cut(s)	137
Van91I	CCANNNNNTGG	1 cut(s)	295
VpaK11BI	GGWCC	1 cut(s)	133
Zsp2I	ATGCAT	1 cut(s)	13

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.