Rroxscaffold_5G00361340

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000716
Physical Location & Seq
Forward (+)
42021945 .. 42024970
3026 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361340.1

Sequence Viewer

Length: 426 bp
ATGGAGACGCCGAAACCAACCCTATTGGCTCAATGCGTGACAGAATGCATTTGGGAAGGAGCTCGAGATGAATCACATCCCGAAAGTGGCATCGTAGCGCCGTTCGGAGCATGCTTCAACGCAAAGGACATTGCTTATTCACGGGCCGGACCGGTTGTGCCTCAGATTGATCTTGTGTTGCAGAGCGAGAGAGTGTACTGGAAGATTGTTGGAGCAAATTCGATGGTGCGTGTGAGCGATGAGGTGTTATGTTTAGGGTTTGTGGATGGCGGTCTGAATCCGAGGACTTCTATTGTGATCGGAGGGCATCAGATTGAGGACAATTTATTGCAGTTTAATTTGGCTGCTAATGGGCTTGGATTCAGCTCTTCACTCTTGTCCCGACAAACCAGCTGCGCCAACTTTAACTTTACATCCACTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

141

Amino Acids

15.15

Weight (kDa)

4.85

Isoelectric Point (pI)

39.53

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_C PF14541 26 - 122 1.9e-31 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 270
AcsI RAATTY 1 cut(s) 217
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 1 cut(s) 197
AfiI CCNNNNNNNGG 1 cut(s) 86
AgeI ACCGGT 1 cut(s) 151
AgsI TTSAA 1 cut(s) 118
AluBI AGCT 3 cut(s) 62, 366, 393
AluI AGCT 3 cut(s) 62, 366, 393
Alw21I GWGCWC 1 cut(s) 64
Ama87I CYCGRG 1 cut(s) 63
AoxI GGCC 1 cut(s) 144
ApeKI GCWGC 2 cut(s) 344, 393
ApoI RAATTY 1 cut(s) 217
AsiGI ACCGGT 1 cut(s) 151
AspLEI GCGC 2 cut(s) 100, 398
AspS9I GGNCC 2 cut(s) 144, 149
AvaI CYCGRG 1 cut(s) 63
AvaII GGWCC 1 cut(s) 149
BanII GRGCYC 1 cut(s) 64
Bbv12I GWGCWC 1 cut(s) 64
BbvI GCAGC 2 cut(s) 331, 380
BccI CCATC 2 cut(s) 217, 260
BceAI ACGGC 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 101
BisI GCNGC 2 cut(s) 345, 394
BlsI GCNGC 2 cut(s) 346, 395
Bme18I GGWCC 1 cut(s) 149
BmeT110I CYCGRG 1 cut(s) 63
BmgT120I GGNCC 2 cut(s) 144, 149
BmsI GCATC 2 cut(s) 99, 316
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 281
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 1 cut(s) 86
Bse118I RCCGGY 1 cut(s) 151
Bse1I ACTGG 1 cut(s) 203
Bse3DI GCAATG 1 cut(s) 129
BseDI CCNNGG 1 cut(s) 281
BseGI GGATG 3 cut(s) 76, 271, 413
BseLI CCNNNNNNNGG 1 cut(s) 86
BseMI GCAATG 1 cut(s) 129
BseMII CTCAG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 203
BseXI GCAGC 2 cut(s) 331, 380
BshFI GGCC 1 cut(s) 146
BshTI ACCGGT 1 cut(s) 151
BsiHKAI GWGCWC 1 cut(s) 64
BsiHKCI CYCGRG 1 cut(s) 63
BsiSI CCGG 2 cut(s) 147, 152
BslFI GGGAC 1 cut(s) 364
BslI CCNNNNNNNGG 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 364
BsmI GAATGC 1 cut(s) 50
BsnI GGCC 1 cut(s) 146
BsoBI CYCGRG 1 cut(s) 63
Bsp1286I GDGCHC 1 cut(s) 64
Bsp143I GATC 2 cut(s) 169, 297
BspACI CCGC 1 cut(s) 270
BspANI GGCC 1 cut(s) 146
BspCNI CTCAG 1 cut(s) 175
BspQI GCTCTTC 1 cut(s) 373
BsrDI GCAATG 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 151
BsrI ACTGG 1 cut(s) 203
BssAI RCCGGY 1 cut(s) 151
BssECI CCNNGG 1 cut(s) 281
BssMI GATC 2 cut(s) 169, 297
BssNI GRCGYC 1 cut(s) 8
Bst6I CTCTTC 1 cut(s) 373
BstACI GRCGYC 1 cut(s) 8
BstC8I GCNNGC 1 cut(s) 112
BstDEI CTNAG 1 cut(s) 162
BstF5I GGATG 3 cut(s) 76, 271, 413
BstH2I RGCGCY 1 cut(s) 101
BstHHI GCGC 2 cut(s) 100, 398
BstKTI GATC 2 cut(s) 172, 300
BstMBI GATC 2 cut(s) 169, 297
BstNSI RCATGY 1 cut(s) 114
BstV1I GCAGC 2 cut(s) 331, 380
BsuRI GGCC 1 cut(s) 146
BtgZI GCGATG 1 cut(s) 252
BtsCI GGATG 3 cut(s) 76, 271, 413
BtsI GCAGTG 1 cut(s) 417
BtsIMutI CAGTG 1 cut(s) 417
Cac8I GCNNGC 1 cut(s) 112
CfoI GCGC 2 cut(s) 100, 398
Cfr10I RCCGGY 1 cut(s) 151
Cfr13I GGNCC 2 cut(s) 144, 149
CpoI CGGWCCG 1 cut(s) 149
CseI GACGC 1 cut(s) 16
Csp6I GTAC 1 cut(s) 196
CspAI ACCGGT 1 cut(s) 151
CspI CGGWCCG 1 cut(s) 149
CviAII CATG 1 cut(s) 111
CviJI RGCY 7 cut(s) 29, 62, 146, 344, 355, 366, 393
CviKI_1 RGCY 7 cut(s) 29, 62, 146, 344, 355, 366, 393
CviQI GTAC 1 cut(s) 196
DdeI CTNAG 1 cut(s) 162
DpnI GATC 2 cut(s) 171, 299
DpnII GATC 2 cut(s) 169, 297
Eam1104I CTCTTC 1 cut(s) 373
EarI CTCTTC 1 cut(s) 373
Ecl136II GAGCTC 1 cut(s) 62
Eco24I GRGCYC 1 cut(s) 64
Eco47I GGWCC 1 cut(s) 149
Eco53kI GAGCTC 1 cut(s) 62
Eco88I CYCGRG 1 cut(s) 63
EcoICRI GAGCTC 1 cut(s) 62
EcoT22I ATGCAT 1 cut(s) 50
EcoT38I GRGCYC 1 cut(s) 64
FaeI CATG 1 cut(s) 114
FaiI YATR 2 cut(s) 112, 250
FaqI GGGAC 1 cut(s) 364
FatI CATG 1 cut(s) 110
Fnu4HI GCNGC 2 cut(s) 345, 394
FokI GGATG 3 cut(s) 63, 278, 400
FriOI GRGCYC 1 cut(s) 64
Fsp4HI GCNGC 2 cut(s) 345, 394
GlaI GCGC 2 cut(s) 99, 397
GluI GCNGC 2 cut(s) 345, 394
HaeII RGCGCY 1 cut(s) 101
HaeIII GGCC 1 cut(s) 146
HapII CCGG 2 cut(s) 147, 152
HgaI GACGC 1 cut(s) 16
HhaI GCGC 2 cut(s) 100, 398
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 1 cut(s) 114
Hin6I GCGC 2 cut(s) 98, 396
HinP1I GCGC 2 cut(s) 98, 396
HinfI GANTC 3 cut(s) 71, 277, 360
HpaII CCGG 2 cut(s) 147, 152
Hpy166II GTNNAC 1 cut(s) 196
Hpy188I TCNGA 6 cut(s) 107, 165, 276, 282, 302, 312
Hpy188III TCNNGA 3 cut(s) 65, 80, 381
Hpy8I GTNNAC 1 cut(s) 196
HpyAV CCTTC 1 cut(s) 50
HpyCH4V TGCA 3 cut(s) 48, 181, 331
HpyF3I CTNAG 1 cut(s) 162
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 1 cut(s) 114
HspAI GCGC 2 cut(s) 98, 396
Kzo9I GATC 2 cut(s) 169, 297
LguI GCTCTTC 1 cut(s) 373
LmnI GCTCC 3 cut(s) 59, 107, 212
LpnPI CCDG 4 cut(s) 160, 165, 184, 403
Lsp1109I GCAGC 2 cut(s) 331, 380
LweI GCATC 2 cut(s) 99, 316
MaeIII GTNAC 1 cut(s) 37
MalI GATC 2 cut(s) 171, 299
MboI GATC 2 cut(s) 169, 297
MboII GAAGA 2 cut(s) 214, 360
MhlI GDGCHC 1 cut(s) 64
MluCI AATT 3 cut(s) 217, 322, 337
MmeI TCCRAC 1 cut(s) 190
MnlI CCTC 5 cut(s) 171, 235, 276, 296, 310
Mph1103I ATGCAT 1 cut(s) 50
MseI TTAA 2 cut(s) 336, 405
MspA1I CMGCKG 1 cut(s) 393
MspI CCGG 2 cut(s) 147, 152
Mva1269I GAATGC 1 cut(s) 50
NdeII GATC 2 cut(s) 169, 297
NlaIII CATG 1 cut(s) 114
NmuCI GTSAC 1 cut(s) 37
NsiI ATGCAT 1 cut(s) 50
NspI RCATGY 1 cut(s) 114
PaeI GCATGC 1 cut(s) 114
PaeR7I CTCGAG 1 cut(s) 63
PciSI GCTCTTC 1 cut(s) 373
PctI GAATGC 1 cut(s) 50
PfeI GAWTC 3 cut(s) 71, 277, 360
PinAI ACCGGT 1 cut(s) 151
PkrI GCNGC 2 cut(s) 346, 395
Psp124BI GAGCTC 1 cut(s) 64
PspPI GGNCC 2 cut(s) 144, 149
PvuII CAGCTG 1 cut(s) 393
RsaI GTAC 1 cut(s) 197
RsaNI GTAC 1 cut(s) 196
Rsr2I CGGWCCG 1 cut(s) 149
RsrII CGGWCCG 1 cut(s) 149
SacI GAGCTC 1 cut(s) 64
SapI GCTCTTC 1 cut(s) 373
SaqAI TTAA 2 cut(s) 336, 405
SatI GCNGC 2 cut(s) 345, 394
Sau3AI GATC 2 cut(s) 169, 297
Sau96I GGNCC 2 cut(s) 144, 149
SduI GDGCHC 1 cut(s) 64
SetI ASST 4 cut(s) 64, 246, 368, 395
SfaNI GCATC 2 cut(s) 99, 316
Sfr274I CTCGAG 1 cut(s) 63
SinI GGWCC 1 cut(s) 149
SlaI CTCGAG 1 cut(s) 63
SmlI CTYRAG 1 cut(s) 63
SmoI CTYRAG 1 cut(s) 63
SphI GCATGC 1 cut(s) 114
Sse9I AATT 3 cut(s) 217, 322, 337
SsiI CCGC 1 cut(s) 270
SstI GAGCTC 1 cut(s) 64
TaqI TCGA 2 cut(s) 64, 221
TasI AATT 3 cut(s) 217, 322, 337
TatI WGTACW 1 cut(s) 195
TfiI GAWTC 3 cut(s) 71, 277, 360
Tru1I TTAA 2 cut(s) 336, 405
Tru9I TTAA 2 cut(s) 336, 405
TscAI CASTG 1 cut(s) 424
TseFI GTSAC 1 cut(s) 37
TseI GCWGC 2 cut(s) 344, 393
Tsp45I GTSAC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 84
TspRI CASTG 1 cut(s) 424
VpaK11BI GGWCC 1 cut(s) 149
XapI RAATTY 1 cut(s) 217
XceI RCATGY 1 cut(s) 114
XhoI CTCGAG 1 cut(s) 63
Zsp2I ATGCAT 1 cut(s) 50
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.