pycom13g15900

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000716
Physical Location & Seq
Reverse (-)
11700857 .. 11701534
678 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g15900.2

Sequence Viewer

Length: 588 bp
ATGGATGTGTCCAACTCGCTTACTTACACCTCATTGCTCCTCAACCCTTTCACCACAGCCCTGACTTACGTGGAAGATCAAAACGGCCATGGTAGTACAAAAATTAGCACCGTTAATCCCTACACAGTGTTGGGAAGCTCAATCTTCAACACTCTTAGTTGGGCATTTCTGAAATTACTCCCCGCTTCAATTCCTAGATTGGGATACATAGAGCCTTACGGACAATGCTTTAACTCGTCCTACATCAGAGAGAACGACGTGCTTAGTATTGATTTGGTGTTGCAGAGTGAGAGTGTGTACTGGAGGCTGTCTAAACCAAACTCGATGGTGCAAGTCAAAAAAGACGTGGTGTGTTTGGCATTTGTTGATGCTGGGCAAAGTCCAACCCCTAGGACTTCCATTGTGATCGGAGGGCATCAATTGGAGGAGAATCTTCTCCAATTTGATTTGGTTAATAAGAAGTTTGGGTTCAGCTCCTCACTACTGTCCAAAAGATCAGTTGTTCCAACTTCAACTTCACTTCTACTGCTTAGAGAGAAAGTGTCCTTTAGGTGGTCCTACCTGGTGTGCTTTCATTGTTTATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

196

Amino Acids

21.81

Weight (kDa)

8.33

Isoelectric Point (pI)

37.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 586
AciI CCGC 1 cut(s) 183
AcoI YGGCCR 1 cut(s) 85
AfaI GTAC 2 cut(s) 97, 299
AfiI CCNNNNNNNGG 2 cut(s) 200, 552
AgsI TTSAA 3 cut(s) 148, 189, 513
AjiI CACGTC 2 cut(s) 259, 346
AjnI CCWGG 1 cut(s) 561
AjuI GAANNNNNNNTTGG 2 cut(s) 499, 531
AluBI AGCT 2 cut(s) 138, 474
AluI AGCT 2 cut(s) 138, 474
AoxI GGCC 1 cut(s) 85
AspA2I CCTAGG 1 cut(s) 389
AspS9I GGNCC 1 cut(s) 555
AsuHPI GGTGA 1 cut(s) 43
AvaII GGWCC 1 cut(s) 555
AvrII CCTAGG 1 cut(s) 389
BccI CCATC 1 cut(s) 319
BceAI ACGGC 1 cut(s) 100
BciT130I CCWGG 1 cut(s) 563
BciVI GTATCC 1 cut(s) 197
BfaI CTAG 2 cut(s) 195, 390
BfuI GTATCC 1 cut(s) 197
BlnI CCTAGG 1 cut(s) 389
Bme1390I CCNGG 1 cut(s) 563
Bme18I GGWCC 1 cut(s) 555
BmgBI CACGTC 2 cut(s) 259, 346
BmgT120I GGNCC 1 cut(s) 555
BmrFI CCNGG 1 cut(s) 563
BmsI GCATC 2 cut(s) 358, 424
BpmI CTGGAG 1 cut(s) 322
BsaAI YACGTR 1 cut(s) 70
BsaJI CCNNGG 2 cut(s) 88, 389
Bsc4I CCNNNNNNNGG 2 cut(s) 200, 552
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 32
BseBI CCWGG 1 cut(s) 563
BseDI CCNNGG 2 cut(s) 88, 389
BseGI GGATG 1 cut(s) 10
BseLI CCNNNNNNNGG 2 cut(s) 200, 552
BseMI GCAATG 1 cut(s) 32
BseNI ACTGG 1 cut(s) 305
BseRI GAGGAG 3 cut(s) 29, 440, 466
BseYI CCCAGC 1 cut(s) 371
BshFI GGCC 1 cut(s) 87
BslI CCNNNNNNNGG 2 cut(s) 200, 552
BsnI GGCC 1 cut(s) 87
Bsp143I GATC 3 cut(s) 76, 405, 494
Bsp19I CCATGG 1 cut(s) 88
BspACI CCGC 1 cut(s) 183
BspANI GGCC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 32
BsrI ACTGG 1 cut(s) 305
BssECI CCNNGG 2 cut(s) 88, 389
BssMI GATC 3 cut(s) 76, 405, 494
BssT1I CCWWGG 2 cut(s) 88, 389
Bst2UI CCWGG 1 cut(s) 563
Bst4CI ACNGT 3 cut(s) 112, 127, 486
BstBAI YACGTR 1 cut(s) 70
BstDEI CTNAG 3 cut(s) 155, 263, 530
BstDSI CCRYGG 1 cut(s) 88
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 3 cut(s) 79, 408, 497
BstMBI GATC 3 cut(s) 76, 405, 494
BstNI CCWGG 1 cut(s) 563
BstSCI CCNGG 1 cut(s) 561
BsuI GTATCC 1 cut(s) 197
BsuRI GGCC 1 cut(s) 87
BtgI CCRYGG 1 cut(s) 88
BtrI CACGTC 2 cut(s) 259, 346
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 555
CsiI ACCWGGT 1 cut(s) 561
Csp6I GTAC 2 cut(s) 96, 298
CviAII CATG 1 cut(s) 89
CviJI RGCY 6 cut(s) 59, 87, 138, 214, 307, 474
CviKI_1 RGCY 6 cut(s) 59, 87, 138, 214, 307, 474
CviQI GTAC 2 cut(s) 96, 298
DdeI CTNAG 3 cut(s) 155, 263, 530
DpnI GATC 3 cut(s) 78, 407, 496
DpnII GATC 3 cut(s) 76, 405, 494
EaeI YGGCCR 1 cut(s) 85
Eco130I CCWWGG 2 cut(s) 88, 389
Eco47I GGWCC 1 cut(s) 555
EcoRII CCWGG 1 cut(s) 561
EcoT14I CCWWGG 2 cut(s) 88, 389
ErhI CCWWGG 2 cut(s) 88, 389
FaeI CATG 1 cut(s) 92
FaiI YATR 3 cut(s) 90, 209, 586
FatI CATG 1 cut(s) 88
FauI CCCGC 1 cut(s) 190
FokI GGATG 1 cut(s) 17
FspBI CTAG 2 cut(s) 195, 390
GsaI CCCAGC 1 cut(s) 375
GsuI CTGGAG 1 cut(s) 322
HaeIII GGCC 1 cut(s) 87
Hin1II CATG 1 cut(s) 92
HinfI GANTC 1 cut(s) 430
HphI GGTGA 1 cut(s) 43
Hpy166II GTNNAC 1 cut(s) 298
Hpy188I TCNGA 3 cut(s) 171, 248, 410
Hpy8I GTNNAC 1 cut(s) 298
Hpy99I CGWCG 1 cut(s) 260
HpyCH4III ACNGT 3 cut(s) 112, 127, 486
HpyCH4IV ACGT 3 cut(s) 69, 258, 345
HpyCH4V TGCA 2 cut(s) 283, 331
HpyF3I CTNAG 3 cut(s) 155, 263, 530
HpySE526I ACGT 3 cut(s) 69, 258, 345
Hsp92II CATG 1 cut(s) 92
Kzo9I GATC 3 cut(s) 76, 405, 494
LmnI GCTCC 2 cut(s) 42, 479
LpnPI CCDG 5 cut(s) 74, 286, 357, 548, 575
LweI GCATC 2 cut(s) 358, 424
MabI ACCWGGT 1 cut(s) 561
MaeI CTAG 2 cut(s) 195, 390
MaeII ACGT 3 cut(s) 69, 258, 345
MalI GATC 3 cut(s) 78, 407, 496
MboI GATC 3 cut(s) 76, 405, 494
MboII GAAGA 3 cut(s) 86, 136, 425
MfeI CAATTG 1 cut(s) 419
MluCI AATT 5 cut(s) 102, 173, 189, 419, 440
MmeI TCCRAC 3 cut(s) 36, 407, 530
MnlI CCTC 6 cut(s) 40, 50, 297, 404, 418, 487
MseI TTAA 3 cut(s) 114, 231, 453
MspR9I CCNGG 1 cut(s) 563
MunI CAATTG 1 cut(s) 419
MvaI CCWGG 1 cut(s) 563
NcoI CCATGG 1 cut(s) 88
NdeII GATC 3 cut(s) 76, 405, 494
NlaIII CATG 1 cut(s) 92
PfeI GAWTC 1 cut(s) 430
Ppu21I YACGTR 1 cut(s) 70
PsiI TTATAA 1 cut(s) 586
Psp6I CCWGG 1 cut(s) 561
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 561
PspPI GGNCC 1 cut(s) 555
RsaI GTAC 2 cut(s) 97, 299
RsaNI GTAC 2 cut(s) 96, 298
SaqAI TTAA 3 cut(s) 114, 231, 453
Sau3AI GATC 3 cut(s) 76, 405, 494
Sau96I GGNCC 1 cut(s) 555
ScrFI CCNGG 1 cut(s) 563
SetI ASST 8 cut(s) 32, 72, 140, 261, 348, 476, 554, 564
SexAI ACCWGGT 1 cut(s) 561
SfaNI GCATC 2 cut(s) 358, 424
SinI GGWCC 1 cut(s) 555
Sse9I AATT 5 cut(s) 102, 173, 189, 419, 440
SsiI CCGC 1 cut(s) 183
SspMI CTAG 2 cut(s) 195, 390
StyD4I CCNGG 1 cut(s) 561
StyI CCWWGG 2 cut(s) 88, 389
TaaI ACNGT 3 cut(s) 112, 127, 486
TaiI ACGT 3 cut(s) 72, 261, 348
TaqI TCGA 1 cut(s) 323
TasI AATT 5 cut(s) 102, 173, 189, 419, 440
TatI WGTACW 2 cut(s) 95, 297
TfiI GAWTC 1 cut(s) 430
Tru1I TTAA 3 cut(s) 114, 231, 453
Tru9I TTAA 3 cut(s) 114, 231, 453
TscAI CASTG 1 cut(s) 132
TspDTI ATGAA 1 cut(s) 563
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 1 cut(s) 132
VpaK11BI GGWCC 1 cut(s) 555
XmaJI CCTAGG 1 cut(s) 389
XspI CTAG 2 cut(s) 195, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.