Rroxscaffold_5G00361370

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0000716
Physical Location & Seq
Reverse (-)
42046100 .. 42048512
2413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00361370.1

Sequence Viewer

Length: 1320 bp
ATGGCTTCCTCTTCATTTCAGTGCCTTATTCTTCTTTGCTCACTAGCTTTCTTCTTCTTCGCCACTCCCTCACTAGCCAAAACATCTTTCAAACCCAAAGCCCTAGTTCTTCCAGTAACTAAAGACCCTTCTACCCTCCAATACCTCACCACCATCAACCAAAGAACCCCTCTAGTCCCTGTTAAACTGACCACTGACCTCGGCGGTCAATCACTTTGGGTAGATTGTGAGGGAGGCTATGTCTCCTCCACCTACAAACCTGCCCATTGTGGATCCTCGCAGTGCAAACTCGCCGGGTCGAAGGCGTGTACCACAGAGTGCTACTCATCCCCAAAACCAGGTTGCTACAACAACACGTGTAACATCTCCCCAGACAACCCTCTCGCCACCACACTCACCGGGGACGGTCAACTCGGTCAAGACGTAGTTTCCCTTCAATCCACAGAGGGGTCTAATCCAGGTCCGGTTGTTTCTACTCCAAACATCCTCTTCAGTTGTGGTGACACTTCTCTCTTGGCAAACCTTTCCGCCGGTGTTAAGGGCATGGCTGGCCTTGGCAGGCCTAAAGTCGGACTTCCTTCCCAGTTTGCATACGCTTTTAGCTTCAACAGGAAATTCGCCATTTGCCTGACCTCCTCAACAAAATCACAAGGTGTCATATTTTTCGGTGACAGTCCTTATGTTTTCCTTCCCGGCGTTGATGTCTCGAAGTCGCTTATGTTCACCAAATTGATCCTCAACCCGGTAAGTACGGCTGGTGGTTATTTCGCAGGCGATGCTTCTTCAGAATACTTCATTGGAGTAAAGTCCATCAAGGTCAACGAAAAAGTTGTTCCATTTAATACTACATTGCTAGCCATTGACCAAGAAGGGTATGGTGGCACAAGAATTAGCACTCTGAAGCCTTACACGGTTTTGGAGACATCGATCTACAAGGCTGTCGTGAATGCGTTTGTCAAATCACTCGCTCGCATACCAAGAGTGAAATCCGTAGCGCCTTTCGGAGCGTGCTACAACTCAAAGAGGATTGGCAGCACACGTGTCGGCCCGAGTGTGCCTGCAATTGACCTTGTGTTGAGCAAGGGAGTGTACTGGAGGGTGTTTGGAGCAAACTCGATGGTGCAGGTGGGCAAGGACGTGTTGTGTTTAGCATTTGTGGATGGCGGTGTAAGGCCAAGGACTTCTATTGTGATTGGAGGGCATCAAATCGAGGACAATCTTCTTCAATTTGATTTGGCTAACAAGAGGCTCGGATTCAGCTCCTCCTTGTTGTTCCGACAAACAAACTGTGCCAACTTTAACTTCACTTCCACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

439

Amino Acids

46.72

Weight (kDa)

9.2

Isoelectric Point (pI)

39.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 48 - 224 1.3e-44 Xylanase inhibitor N-terminal
TAXi_C PF14541 263 - 420 5.9e-62 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1114
Acc36I ACCTGC 2 cut(s) 268, 1114
AciI CCGC 3 cut(s) 204, 528, 1164
AclWI GGATC 3 cut(s) 267, 280, 727
AcsI RAATTY 1 cut(s) 614
AcuI CTGAAG 3 cut(s) 475, 768, 920
AcvI CACGTG 2 cut(s) 357, 1040
AdeI CACNNNGTG 2 cut(s) 318, 653
AfaI GTAC 3 cut(s) 310, 751, 1091
AfiI CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
AflIII ACRYGT 5 cut(s) 354, 356, 1037, 1039, 1137
AgsI TTSAA 4 cut(s) 91, 437, 607, 1226
AjiI CACGTC 1 cut(s) 1138
AjnI CCWGG 2 cut(s) 337, 457
AjuI GAANNNNNNNTTGG 6 cut(s) 71, 103, 780, 812, 1286, 1318
AluBI AGCT 3 cut(s) 47, 603, 1260
AluI AGCT 3 cut(s) 47, 603, 1260
Alw26I GTCTC 3 cut(s) 247, 709, 914
AlwI GGATC 3 cut(s) 267, 280, 727
Ama87I CYCGRG 1 cut(s) 1048
AoxI GGCC 4 cut(s) 550, 560, 1045, 1172
ApeKI GCWGC 1 cut(s) 1032
ApoI RAATTY 1 cut(s) 614
AspLEI GCGC 1 cut(s) 997
AspS9I GGNCC 2 cut(s) 461, 1046
AsuC2I CCSGG 4 cut(s) 295, 400, 693, 743
AsuHPI GGTGA 5 cut(s) 139, 388, 512, 680, 715
AsuNHI GCTAGC 1 cut(s) 853
AvaI CYCGRG 1 cut(s) 1048
AvaII GGWCC 1 cut(s) 461
BamHI GGATCC 1 cut(s) 272
BarI GAAGNNNNNNTAC 2 cut(s) 417, 449
BbrPI CACGTG 2 cut(s) 357, 1040
BbvI GCAGC 1 cut(s) 1044
BccI CCATC 4 cut(s) 161, 818, 1111, 1154
BceAI ACGGC 1 cut(s) 768
BcgI CGANNNNNNTGC 2 cut(s) 1024, 1058
BciT130I CCWGG 2 cut(s) 339, 459
BcnI CCSGG 4 cut(s) 295, 400, 693, 743
BcoDI GTCTC 3 cut(s) 247, 709, 914
BfaI CTAG 5 cut(s) 44, 74, 104, 173, 854
BfoI RGCGCY 1 cut(s) 998
BfuAI ACCTGC 2 cut(s) 268, 1114
BisI GCNGC 1 cut(s) 1033
BlsI GCNGC 1 cut(s) 1034
Bme1390I CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
Bme18I GGWCC 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 1048
BmgBI CACGTC 1 cut(s) 1138
BmgT120I GGNCC 2 cut(s) 461, 1046
BmiI GGNNCC 1 cut(s) 274
BmrFI CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
BmrI ACTGGG 1 cut(s) 577
BmsI GCATC 2 cut(s) 766, 1210
BmtI GCTAGC 1 cut(s) 857
BmuI ACTGGG 1 cut(s) 577
BplI GAGNNNNNCTC 2 cut(s) 308, 340
BpmI CTGGAG 1 cut(s) 1114
BpuMI CCSGG 4 cut(s) 295, 400, 693, 743
Bsa29I ATCGAT 1 cut(s) 926
BsaAI YACGTR 2 cut(s) 357, 1040
BsaJI CCNNGG 4 cut(s) 199, 399, 553, 1175
BsaWI WCCGGW 1 cut(s) 463
BsaXI ACNNNNNCTCC 2 cut(s) 225, 255
Bsc4I CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
Bse118I RCCGGY 1 cut(s) 530
Bse1I ACTGG 3 cut(s) 113, 583, 1097
Bse3DI GCAATG 1 cut(s) 848
BseBI CCWGG 2 cut(s) 339, 459
BseCI ATCGAT 1 cut(s) 926
BseDI CCNNGG 4 cut(s) 199, 399, 553, 1175
BseGI GGATG 3 cut(s) 326, 483, 1165
BseLI CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
BseMI GCAATG 1 cut(s) 848
BseNI ACTGG 3 cut(s) 113, 583, 1097
BseRI GAGGAG 3 cut(s) 235, 625, 1252
BseXI GCAGC 1 cut(s) 1044
BsgI GTGCAG 1 cut(s) 1142
BshFI GGCC 4 cut(s) 552, 562, 1047, 1174
BshVI ATCGAT 1 cut(s) 926
BsiHKCI CYCGRG 1 cut(s) 1048
BsiSI CCGG 6 cut(s) 294, 399, 464, 531, 693, 743
BslFI GGGAC 2 cut(s) 161, 416
BslI CCNNNNNNNGG 4 cut(s) 338, 447, 569, 742
BsmAI GTCTC 3 cut(s) 247, 709, 914
BsmFI GGGAC 2 cut(s) 161, 416
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 4 cut(s) 552, 562, 1047, 1174
BsoBI CYCGRG 1 cut(s) 1048
Bsp143I GATC 3 cut(s) 272, 732, 927
BspACI CCGC 3 cut(s) 204, 528, 1164
BspANI GGCC 4 cut(s) 552, 562, 1047, 1174
BspDI ATCGAT 1 cut(s) 926
BspLI GGNNCC 1 cut(s) 274
BspMI ACCTGC 2 cut(s) 268, 1114
BspOI GCTAGC 1 cut(s) 857
BspPI GGATC 3 cut(s) 267, 280, 727
BsrDI GCAATG 1 cut(s) 848
BsrFI RCCGGY 1 cut(s) 530
BsrI ACTGG 3 cut(s) 113, 583, 1097
BssAI RCCGGY 1 cut(s) 530
BssECI CCNNGG 4 cut(s) 199, 399, 553, 1175
BssMI GATC 3 cut(s) 272, 732, 927
BssT1I CCWWGG 2 cut(s) 553, 1175
Bst2UI CCWGG 2 cut(s) 339, 459
Bst4CI ACNGT 4 cut(s) 407, 674, 913, 1289
Bst6I CTCTTC 2 cut(s) 16, 494
BstAPI GCANNNNNTGC 1 cut(s) 776
BstBAI YACGTR 2 cut(s) 357, 1040
BstC8I GCNNGC 7 cut(s) 550, 560, 772, 855, 970, 1009, 1059
BstDEI CTNAG 1 cut(s) 1317
BstF5I GGATG 3 cut(s) 326, 483, 1165
BstH2I RGCGCY 1 cut(s) 998
BstHHI GCGC 1 cut(s) 997
BstKTI GATC 3 cut(s) 275, 735, 930
BstMAI GTCTC 3 cut(s) 247, 709, 914
BstMBI GATC 3 cut(s) 272, 732, 927
BstMWI GCNNNNNNNGC 2 cut(s) 549, 776
BstNI CCWGG 2 cut(s) 339, 459
BstSCI CCNGG 6 cut(s) 293, 337, 398, 457, 691, 741
BstV1I GCAGC 1 cut(s) 1044
BstX2I RGATCY 1 cut(s) 272
BstYI RGATCY 1 cut(s) 272
Bsu15I ATCGAT 1 cut(s) 926
BsuRI GGCC 4 cut(s) 552, 562, 1047, 1174
BsuTUI ATCGAT 1 cut(s) 926
BtgZI GCGATG 1 cut(s) 789
BtrI CACGTC 1 cut(s) 1138
BtsCI GGATG 3 cut(s) 326, 483, 1165
BtsI GCAGTG 1 cut(s) 287
BtsIMutI CAGTG 3 cut(s) 26, 192, 287
BveI ACCTGC 2 cut(s) 268, 1114
Cac8I GCNNGC 7 cut(s) 550, 560, 772, 855, 970, 1009, 1059
CfoI GCGC 1 cut(s) 997
Cfr10I RCCGGY 1 cut(s) 530
Cfr13I GGNCC 2 cut(s) 461, 1046
ClaI ATCGAT 1 cut(s) 926
CsiI ACCWGGT 1 cut(s) 337
Csp6I GTAC 3 cut(s) 309, 750, 1090
CviAII CATG 1 cut(s) 544
CviQI GTAC 3 cut(s) 309, 750, 1090
DdeI CTNAG 1 cut(s) 1317
DpnI GATC 3 cut(s) 274, 734, 929
DpnII GATC 3 cut(s) 272, 732, 927
DraIII CACNNNGTG 2 cut(s) 318, 653
Eam1104I CTCTTC 2 cut(s) 16, 494
EarI CTCTTC 2 cut(s) 16, 494
EciI GGCGGA 1 cut(s) 517
Eco130I CCWWGG 2 cut(s) 553, 1175
Eco147I AGGCCT 1 cut(s) 562
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 3 cut(s) 475, 768, 920
Eco72I CACGTG 2 cut(s) 357, 1040
Eco88I CYCGRG 1 cut(s) 1048
EcoRII CCWGG 2 cut(s) 337, 457
EcoT14I CCWWGG 2 cut(s) 553, 1175
ErhI CCWWGG 2 cut(s) 553, 1175
FaeI CATG 1 cut(s) 547
FaiI YATR 8 cut(s) 240, 545, 592, 659, 681, 719, 876, 974
FalI AAGNNNNNCTT 2 cut(s) 558, 590
FaqI GGGAC 2 cut(s) 161, 416
FatI CATG 1 cut(s) 543
Fnu4HI GCNGC 1 cut(s) 1033
FokI GGATG 3 cut(s) 313, 470, 1172
Fsp4HI GCNGC 1 cut(s) 1033
FspBI CTAG 5 cut(s) 44, 74, 104, 173, 854
GlaI GCGC 1 cut(s) 996
GluI GCNGC 1 cut(s) 1033
GsuI CTGGAG 1 cut(s) 1114
HaeII RGCGCY 1 cut(s) 998
HaeIII GGCC 4 cut(s) 552, 562, 1047, 1174
HapII CCGG 6 cut(s) 294, 399, 464, 531, 693, 743
HhaI GCGC 1 cut(s) 997
Hin1II CATG 1 cut(s) 547
Hin6I GCGC 1 cut(s) 995
HinP1I GCGC 1 cut(s) 995
HincII GTYRAC 2 cut(s) 410, 820
HindII GTYRAC 2 cut(s) 410, 820
HinfI GANTC 1 cut(s) 1254
HpaII CCGG 6 cut(s) 294, 399, 464, 531, 693, 743
HphI GGTGA 5 cut(s) 139, 388, 512, 680, 715
Hpy166II GTNNAC 5 cut(s) 309, 410, 723, 820, 1090
Hpy188I TCNGA 6 cut(s) 572, 787, 900, 1004, 1253, 1277
Hpy188III TCNNGA 3 cut(s) 419, 706, 943
Hpy8I GTNNAC 5 cut(s) 309, 410, 723, 820, 1090
HpyAV CCTTC 6 cut(s) 138, 295, 443, 588, 698, 863
HpyCH4III ACNGT 4 cut(s) 407, 674, 913, 1289
HpyCH4IV ACGT 4 cut(s) 356, 423, 1039, 1137
HpyCH4V TGCA 4 cut(s) 285, 590, 1061, 1123
HpyF10VI GCNNNNNNNGC 2 cut(s) 549, 776
HpyF3I CTNAG 1 cut(s) 1317
HpySE526I ACGT 4 cut(s) 356, 423, 1039, 1137
Hsp92II CATG 1 cut(s) 547
HspAI GCGC 1 cut(s) 995
Kzo9I GATC 3 cut(s) 272, 732, 927
LmnI GCTCC 3 cut(s) 1004, 1106, 1265
Lsp1109I GCAGC 1 cut(s) 1044
LweI GCATC 2 cut(s) 766, 1210
MabI ACCWGGT 1 cut(s) 337
MaeI CTAG 5 cut(s) 44, 74, 104, 173, 854
MaeII ACGT 4 cut(s) 356, 423, 1039, 1137
MaeIII GTNAC 4 cut(s) 115, 359, 500, 668
MalI GATC 3 cut(s) 274, 734, 929
MboI GATC 3 cut(s) 272, 732, 927
MfeI CAATTG 1 cut(s) 1062
MflI RGATCY 1 cut(s) 272
MluCI AATT 5 cut(s) 614, 728, 888, 1062, 1226
MmeI TCCRAC 2 cut(s) 550, 1300
MseI TTAA 4 cut(s) 183, 537, 840, 1299
MslI CAYNNNNRTG 1 cut(s) 19
MspI CCGG 6 cut(s) 294, 399, 464, 531, 693, 743
MspR9I CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
MunI CAATTG 1 cut(s) 1062
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 2 cut(s) 339, 459
MwoI GCNNNNNNNGC 2 cut(s) 549, 776
NciI CCSGG 4 cut(s) 295, 400, 693, 743
NdeII GATC 3 cut(s) 272, 732, 927
NheI GCTAGC 1 cut(s) 853
NlaIII CATG 1 cut(s) 547
NlaIV GGNNCC 1 cut(s) 274
NmeAIII GCCGAG 1 cut(s) 180
NmuCI GTSAC 2 cut(s) 500, 668
PaqCI CACCTGC 1 cut(s) 1114
PceI AGGCCT 1 cut(s) 562
PcsI WCGNNNNNNNCGW 1 cut(s) 420
PctI GAATGC 1 cut(s) 952
PfeI GAWTC 1 cut(s) 1254
PkrI GCNGC 1 cut(s) 1034
PmaCI CACGTG 2 cut(s) 357, 1040
PmlI CACGTG 2 cut(s) 357, 1040
Ppu21I YACGTR 2 cut(s) 357, 1040
Psp6I CCWGG 2 cut(s) 337, 457
PspCI CACGTG 2 cut(s) 357, 1040
PspGI CCWGG 2 cut(s) 337, 457
PspN4I GGNNCC 1 cut(s) 274
PspPI GGNCC 2 cut(s) 461, 1046
PsuI RGATCY 1 cut(s) 272
RsaI GTAC 3 cut(s) 310, 751, 1091
RsaNI GTAC 3 cut(s) 309, 750, 1090
RseI CAYNNNNRTG 1 cut(s) 19
SaqAI TTAA 4 cut(s) 183, 537, 840, 1299
SatI GCNGC 1 cut(s) 1033
Sau3AI GATC 3 cut(s) 272, 732, 927
Sau96I GGNCC 2 cut(s) 461, 1046
ScrFI CCNGG 6 cut(s) 295, 339, 400, 459, 693, 743
SexAI ACCWGGT 1 cut(s) 337
SfaNI GCATC 2 cut(s) 766, 1210
SgrAI CRCCGGYG 1 cut(s) 530
SinI GGWCC 1 cut(s) 461
SmiMI CAYNNNNRTG 1 cut(s) 19
Sse9I AATT 5 cut(s) 614, 728, 888, 1062, 1226
SseBI AGGCCT 1 cut(s) 562
SsiI CCGC 3 cut(s) 204, 528, 1164
SspMI CTAG 5 cut(s) 44, 74, 104, 173, 854
StuI AGGCCT 1 cut(s) 562
StyD4I CCNGG 6 cut(s) 293, 337, 398, 457, 691, 741
StyI CCWWGG 2 cut(s) 553, 1175
TaaI ACNGT 4 cut(s) 407, 674, 913, 1289
TaiI ACGT 4 cut(s) 359, 426, 1042, 1140
TaqI TCGA 5 cut(s) 299, 707, 926, 1115, 1209
TaqII GACCGA 1 cut(s) 404
TasI AATT 5 cut(s) 614, 728, 888, 1062, 1226
TatI WGTACW 1 cut(s) 1089
TfiI GAWTC 1 cut(s) 1254
Tru1I TTAA 4 cut(s) 183, 537, 840, 1299
Tru9I TTAA 4 cut(s) 183, 537, 840, 1299
TscAI CASTG 3 cut(s) 26, 199, 287
TseFI GTSAC 2 cut(s) 500, 668
TseI GCWGC 1 cut(s) 1032
Tsp45I GTSAC 2 cut(s) 500, 668
TspDTI ATGAA 1 cut(s) 784
TspGWI ACGGA 1 cut(s) 979
TspRI CASTG 3 cut(s) 26, 199, 287
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 1 cut(s) 614
XcmI CCANNNNNNNNNTGG 1 cut(s) 872
XspI CTAG 5 cut(s) 44, 74, 104, 173, 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.