FvH4_4g14660

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000716
Physical Location & Seq
Forward (+)
18360561 .. 18361459
899 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14660.t1

Sequence Viewer

Length: 810 bp
ATGGAGGCCAATATATCTTCAGATGTTATCTCACTTCACTCCACAGATGGGTCTAATCCTACCAAGATCGTTTCTGTACCCAACTTACTCTTCGTTTGCAGCCAAACATTTCTCCTGACACAACTTGCAGCAGGTGTCAAGGGTATTGCTGGCCTTGGCAGGGCTAAAATCGGCCTCCCTTCCCAATTTGCTTCCGCTTTTAGCTTCAAGAGAAAATTCGCCGTGTGCTTGCCCTCCTCAAGAAGATCATACGGCGTCGTATTCTTCGGGGACGGGCCATACAATCTGCTTCCCAGTATTGATGTATCTAAGTCTCTTATCTACACCCCGTTGATCATCAATCCTGTAACTACTGGGGCTAATTATGAAGAAGGAGAGCCTTCCTTGGAATACTTCATCAACGTAACGTCAATCAAGATCAACGGAAAGGTACTATCCGGATTCAACACTTCGTTGCTGACAATCGACAAAGACGGAACTCTCTGGCGTGCCGAGAGTGACACCGGTAGAGCCATTCGGGTCGGCCTTCCGGTTCCTAACATCGATCTGGTGTTGCAGAGCGAGAGCGTGTACTGGAGGATCTTCGGGGCGAACTCGATGGTGCAGGTGAACCAGGACGTGCTGTGCTTAGGGTTTGTGGACAACGGTCAGAGCCCGAGTAACCCTAGAACTAATATTGTGATTGGGGCGCATCAAATTGAGAACAATCTTCTTCAGTTTGATTTGGCTTCTTCTAGGCTTGGATTCAGCTCCTCTCTCTTGTTCCGACAGACGACTTGCGCTAACTTCAATTTCACTTCTGTTGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

270

Amino Acids

29.05

Weight (kDa)

7.64

Isoelectric Point (pI)

37.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 3 - 91 5.8e-22 Xylanase inhibitor N-terminal
TAXi_C PF14541 173 - 250 6.3e-26 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 122, 595
Acc36I ACCTGC 2 cut(s) 122, 595
AccIII TCCGGA 1 cut(s) 437
AciI CCGC 1 cut(s) 195
AclWI GGATC 1 cut(s) 587
AcsI RAATTY 1 cut(s) 215
AcuI CTGAAG 1 cut(s) 698
AcyI GRCGYC 1 cut(s) 255
AfaI GTAC 3 cut(s) 78, 432, 572
AfiI CCNNNNNNNGG 2 cut(s) 48, 160
AgeI ACCGGT 1 cut(s) 503
AgsI TTSAA 3 cut(s) 208, 445, 790
AjiI CACGTC 1 cut(s) 619
AjnI CCWGG 1 cut(s) 612
AjuI GAANNNNNNNTTGG 2 cut(s) 74, 106
AluBI AGCT 2 cut(s) 204, 750
AluI AGCT 2 cut(s) 204, 750
Alw26I GTCTC 1 cut(s) 318
AlwI GGATC 1 cut(s) 587
Ama87I CYCGRG 1 cut(s) 655
Aor13HI TCCGGA 1 cut(s) 437
AoxI GGCC 5 cut(s) 6, 151, 172, 275, 523
ApeKI GCWGC 2 cut(s) 99, 128
ApoI RAATTY 1 cut(s) 215
AsiGI ACCGGT 1 cut(s) 503
AspLEI GCGC 2 cut(s) 691, 782
AspS9I GGNCC 1 cut(s) 275
AsuHPI GGTGA 1 cut(s) 619
AvaI CYCGRG 1 cut(s) 655
BanII GRGCYC 1 cut(s) 656
BbvI GCAGC 2 cut(s) 111, 140
BccI CCATC 2 cut(s) 41, 592
BceAI ACGGC 2 cut(s) 206, 268
BciT130I CCWGG 1 cut(s) 614
BclI TGATCA 1 cut(s) 333
BcoDI GTCTC 1 cut(s) 318
BfaI CTAG 2 cut(s) 666, 735
BfuAI ACCTGC 2 cut(s) 122, 595
BisI GCNGC 2 cut(s) 100, 129
BlsI GCNGC 2 cut(s) 101, 130
Bme1390I CCNGG 1 cut(s) 614
BmeT110I CYCGRG 1 cut(s) 655
BmgBI CACGTC 1 cut(s) 619
BmgT120I GGNCC 1 cut(s) 275
BmiI GGNNCC 1 cut(s) 534
BmrFI CCNGG 1 cut(s) 614
BmrI ACTGGG 2 cut(s) 288, 363
BmsI GCATC 1 cut(s) 700
BmuI ACTGGG 2 cut(s) 288, 363
BoxI GACNNNNGTC 1 cut(s) 645
BpmI CTGGAG 1 cut(s) 595
Bpu10I CCTNAGC 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 223
Bsa29I ATCGAT 1 cut(s) 543
BsaHI GRCGYC 1 cut(s) 255
BsaJI CCNNGG 2 cut(s) 154, 384
BsaWI WCCGGW 3 cut(s) 437, 503, 529
Bsc4I CCNNNNNNNGG 2 cut(s) 48, 160
Bse118I RCCGGY 1 cut(s) 503
Bse1I ACTGG 3 cut(s) 294, 358, 578
BseAI TCCGGA 1 cut(s) 437
BseBI CCWGG 1 cut(s) 614
BseCI ATCGAT 1 cut(s) 543
BseDI CCNNGG 2 cut(s) 154, 384
BseLI CCNNNNNNNGG 2 cut(s) 48, 160
BseNI ACTGG 3 cut(s) 294, 358, 578
BseRI GAGGAG 2 cut(s) 226, 742
BseXI GCAGC 2 cut(s) 111, 140
BsgI GTGCAG 1 cut(s) 623
BshFI GGCC 5 cut(s) 8, 153, 174, 277, 525
BshTI ACCGGT 1 cut(s) 503
BshVI ATCGAT 1 cut(s) 543
BsiHKCI CYCGRG 1 cut(s) 655
BsiSI CCGG 3 cut(s) 438, 504, 530
BslFI GGGAC 1 cut(s) 284
BslI CCNNNNNNNGG 2 cut(s) 48, 160
BsmAI GTCTC 1 cut(s) 318
BsmFI GGGAC 1 cut(s) 284
BsnI GGCC 5 cut(s) 8, 153, 174, 277, 525
BsoBI CYCGRG 1 cut(s) 655
Bsp1286I GDGCHC 1 cut(s) 656
Bsp13I TCCGGA 1 cut(s) 437
Bsp143I GATC 6 cut(s) 66, 245, 333, 417, 544, 579
BspACI CCGC 1 cut(s) 195
BspANI GGCC 5 cut(s) 8, 153, 174, 277, 525
BspDI ATCGAT 1 cut(s) 543
BspEI TCCGGA 1 cut(s) 437
BspLI GGNNCC 1 cut(s) 534
BspMI ACCTGC 2 cut(s) 122, 595
BspPI GGATC 1 cut(s) 587
BsrFI RCCGGY 1 cut(s) 503
BsrI ACTGG 3 cut(s) 294, 358, 578
BssAI RCCGGY 1 cut(s) 503
BssECI CCNNGG 2 cut(s) 154, 384
BssMI GATC 6 cut(s) 66, 245, 333, 417, 544, 579
BssNI GRCGYC 1 cut(s) 255
BssT1I CCWWGG 2 cut(s) 154, 384
Bst2UI CCWGG 1 cut(s) 614
Bst4CI ACNGT 1 cut(s) 647
Bst6I CTCTTC 1 cut(s) 95
BstACI GRCGYC 1 cut(s) 255
BstC8I GCNNGC 3 cut(s) 151, 230, 489
BstDEI CTNAG 3 cut(s) 309, 628, 807
BstHHI GCGC 2 cut(s) 691, 782
BstKTI GATC 6 cut(s) 69, 248, 336, 420, 547, 582
BstMAI GTCTC 1 cut(s) 318
BstMBI GATC 6 cut(s) 66, 245, 333, 417, 544, 579
BstNI CCWGG 1 cut(s) 614
BstPAI GACNNNNGTC 1 cut(s) 645
BstSCI CCNGG 1 cut(s) 612
BstV1I GCAGC 2 cut(s) 111, 140
BstX2I RGATCY 1 cut(s) 579
BstYI RGATCY 1 cut(s) 579
Bsu15I ATCGAT 1 cut(s) 543
BsuRI GGCC 5 cut(s) 8, 153, 174, 277, 525
BsuTUI ATCGAT 1 cut(s) 543
BtrI CACGTC 1 cut(s) 619
BveI ACCTGC 2 cut(s) 122, 595
Cac8I GCNNGC 3 cut(s) 151, 230, 489
CfoI GCGC 2 cut(s) 691, 782
Cfr10I RCCGGY 1 cut(s) 503
Cfr13I GGNCC 1 cut(s) 275
ClaI ATCGAT 1 cut(s) 543
CseI GACGC 1 cut(s) 244
Csp6I GTAC 3 cut(s) 77, 431, 571
CspAI ACCGGT 1 cut(s) 503
CviQI GTAC 3 cut(s) 77, 431, 571
DdeI CTNAG 3 cut(s) 309, 628, 807
DpnI GATC 6 cut(s) 68, 247, 335, 419, 546, 581
DpnII GATC 6 cut(s) 66, 245, 333, 417, 544, 579
Eam1104I CTCTTC 1 cut(s) 95
EarI CTCTTC 1 cut(s) 95
Eco130I CCWWGG 2 cut(s) 154, 384
Eco24I GRGCYC 1 cut(s) 656
Eco57I CTGAAG 1 cut(s) 698
Eco88I CYCGRG 1 cut(s) 655
EcoRII CCWGG 1 cut(s) 612
EcoT14I CCWWGG 2 cut(s) 154, 384
EcoT38I GRGCYC 1 cut(s) 656
ErhI CCWWGG 2 cut(s) 154, 384
FaiI YATR 4 cut(s) 14, 250, 280, 366
FaqI GGGAC 1 cut(s) 284
FbaI TGATCA 1 cut(s) 333
Fnu4HI GCNGC 2 cut(s) 100, 129
FriOI GRGCYC 1 cut(s) 656
Fsp4HI GCNGC 2 cut(s) 100, 129
FspBI CTAG 2 cut(s) 666, 735
GlaI GCGC 2 cut(s) 690, 781
GluI GCNGC 2 cut(s) 100, 129
GsuI CTGGAG 1 cut(s) 595
HaeIII GGCC 5 cut(s) 8, 153, 174, 277, 525
HapII CCGG 3 cut(s) 438, 504, 530
HgaI GACGC 1 cut(s) 244
HhaI GCGC 2 cut(s) 691, 782
Hin1I GRCGYC 1 cut(s) 255
Hin6I GCGC 2 cut(s) 689, 780
HinP1I GCGC 2 cut(s) 689, 780
HinfI GANTC 2 cut(s) 441, 744
HpaII CCGG 3 cut(s) 438, 504, 530
HphI GGTGA 1 cut(s) 619
Hpy166II GTNNAC 3 cut(s) 571, 610, 640
Hpy188I TCNGA 3 cut(s) 22, 651, 767
Hpy188III TCNNGA 5 cut(s) 115, 208, 240, 415, 438
Hpy8I GTNNAC 3 cut(s) 571, 610, 640
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 4 cut(s) 189, 365, 390, 536
HpyCH4III ACNGT 1 cut(s) 647
HpyCH4IV ACGT 3 cut(s) 402, 407, 618
HpyCH4V TGCA 4 cut(s) 99, 128, 556, 604
HpyF3I CTNAG 3 cut(s) 309, 628, 807
HpySE526I ACGT 3 cut(s) 402, 407, 618
Hsp92I GRCGYC 1 cut(s) 255
HspAI GCGC 2 cut(s) 689, 780
Kpn2I TCCGGA 1 cut(s) 437
Ksp22I TGATCA 1 cut(s) 333
Kzo9I GATC 6 cut(s) 66, 245, 333, 417, 544, 579
LmnI GCTCC 1 cut(s) 755
Lsp1109I GCAGC 2 cut(s) 111, 140
LweI GCATC 1 cut(s) 700
MaeI CTAG 2 cut(s) 666, 735
MaeII ACGT 3 cut(s) 402, 407, 618
MaeIII GTNAC 4 cut(s) 346, 403, 497, 659
MalI GATC 6 cut(s) 68, 247, 335, 419, 546, 581
MboI GATC 6 cut(s) 66, 245, 333, 417, 544, 579
MboII GAAGA 9 cut(s) 9, 82, 255, 256, 380, 574, 701, 704, 723
MflI RGATCY 1 cut(s) 579
MhlI GDGCHC 1 cut(s) 656
MluCI AATT 5 cut(s) 185, 215, 361, 696, 790
MmeI TCCRAC 1 cut(s) 790
MnlI CCTC 5 cut(s) 185, 244, 247, 570, 763
MroI TCCGGA 1 cut(s) 437
MspI CCGG 3 cut(s) 438, 504, 530
MspR9I CCNGG 1 cut(s) 614
MvaI CCWGG 1 cut(s) 614
NdeII GATC 6 cut(s) 66, 245, 333, 417, 544, 579
NlaIV GGNNCC 1 cut(s) 534
NmeAIII GCCGAG 1 cut(s) 517
NmuCI GTSAC 1 cut(s) 497
PaqCI CACCTGC 2 cut(s) 122, 595
PfeI GAWTC 2 cut(s) 441, 744
PinAI ACCGGT 1 cut(s) 503
PkrI GCNGC 2 cut(s) 101, 130
PshAI GACNNNNGTC 1 cut(s) 645
Psp6I CCWGG 1 cut(s) 612
PspGI CCWGG 1 cut(s) 612
PspN4I GGNNCC 1 cut(s) 534
PspPI GGNCC 1 cut(s) 275
PsuI RGATCY 1 cut(s) 579
RsaI GTAC 3 cut(s) 78, 432, 572
RsaNI GTAC 3 cut(s) 77, 431, 571
SatI GCNGC 2 cut(s) 100, 129
Sau3AI GATC 6 cut(s) 66, 245, 333, 417, 544, 579
Sau96I GGNCC 1 cut(s) 275
ScrFI CCNGG 1 cut(s) 614
SduI GDGCHC 1 cut(s) 656
SetI ASST 8 cut(s) 136, 206, 405, 410, 432, 609, 621, 752
SfaNI GCATC 1 cut(s) 700
SmlI CTYRAG 1 cut(s) 238
SmoI CTYRAG 1 cut(s) 238
Sse9I AATT 5 cut(s) 185, 215, 361, 696, 790
SsiI CCGC 1 cut(s) 195
SspI AATATT 1 cut(s) 676
SspMI CTAG 2 cut(s) 666, 735
StyD4I CCNGG 1 cut(s) 612
StyI CCWWGG 2 cut(s) 154, 384
TaaI ACNGT 1 cut(s) 647
TaiI ACGT 3 cut(s) 405, 410, 621
TaqI TCGA 3 cut(s) 465, 543, 596
TasI AATT 5 cut(s) 185, 215, 361, 696, 790
TatI WGTACW 1 cut(s) 570
TfiI GAWTC 2 cut(s) 441, 744
TseFI GTSAC 1 cut(s) 497
TseI GCWGC 2 cut(s) 99, 128
Tsp45I GTSAC 1 cut(s) 497
TspDTI ATGAA 2 cut(s) 381, 385
TspGWI ACGGA 2 cut(s) 438, 489
XapI RAATTY 1 cut(s) 215
XspI CTAG 2 cut(s) 666, 735
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.