Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0000716

Physical Location & Seq

Genomic Coordinates Reverse (-)

46095308 .. 46095685

Gene Structure 378 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG224500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGAGAAGTGTAGGTGCTTATTTTGTAGGCGACCCTAATGCATACTTCATTAACATAAAGTGGATCAAAATCAACGAAAAGCTGGTCCAGTTAAATTTTTCATTGCTAACCACTGACGATGTAGGCAATGGTGGCACACATATTAGCACTGTCAATCCTCAAACGTTATCGAAGACCCCAATCTACAATGCTGTGGTTAGTGCATTTGTCAAAGAGCTCGTTCACATGCCAAGAGTGACACCTGTAGCACCTTCCGGAGCATGCTTCGACCCAAAGAAGATTGGTGTTACGCTGCTGGGTTGGGCTCTACCTGCCATTGATCTTGTTTTGAGACTTTACACTGGAGGGTGTTTGGTGCAAACTCAATGGTGGATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TAXi_C TAXi_N

Protein Analysis

125

Amino Acids

13.75

Weight (kDa)

9.0

Isoelectric Point (pI)

28.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TAXi_C	PF14541	14 - 111	4.8e-24	Xylanase inhibitor C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000716)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03220 AT1G03230
fragaria_vesca	FvH4_2g23780 FvH4_4g14611 FvH4_4g14611 FvH4_4g14640 FvH4_4g14660 FvH4_4g14670
malus_domestica	MD11G1287900.v1.1 MD13G1184500.v1.1 MD13G1184800.v1.1 MD13G1184900.v1.1 MD16G1185000.v1.1 MD16G1185100.v1.1 MD16G1185300.v1.1
prunus_persica	Prupe.1G152100_v2.0.a1 Prupe.1G152200_v2.0.a1 Prupe.8G243100_v2.0.a1
pyrus_communis	pycom11g25550 pycom13g15900 pycom13g15920 pycom16g15520
rosa_chinensis	RchiOBHm_Chr4g0417891 RchiOBHm_Chr4g0417921 RchiOBHm_Chr4g0417961 RchiOBHm_Chr4g0417971 RchiOBHm_Chr4g0417981 RchiOBHm_Chr6g0291301
rosa_laevigata	RLG00000007886 RLG00000007887 RLG00000007888 RLG00000007889 RLG00000007890 RLG00000012125
rosa_multiflora	Rmu_co8285195.1_g000001 Rmu_sc0000032.1_g000028
rosa_roxburghii	Rroxscaffold_160G00433800 Rroxscaffold_4G00327990 Rroxscaffold_5G00361320 Rroxscaffold_5G00361330 Rroxscaffold_5G00361340 Rroxscaffold_5G00361370 Rroxscaffold_5G00361380
rosa_rugosa	Rorug04G0150200 Rorug04G0150300 Rorug04G0150900 Rorug04G0151100 Rorug06G0218600
rosa_samantha	Rh4AG212500 Rh4AG212600 Rh4BG218100 Rh4BG218200 Rh4BG218300 Rh4BG218400 Rh4BG218500 Rh4CG223500 Rh4CG224100 Rh4CG224200 Rh4CG224500 Rh4DG210500 Rh4DG210800 Rh4DG211000 Rh4DG211100 Rh6AG330600 Rh6BG337500 Rh6BG337600 Rh6CG343900 Rh6DG330900
rosa_wichuraiana	Rw4G018040 Rw4G018050 Rw4G018060 Rw4G018070 Rw6G028710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	319
AccIII	TCCGGA	1 cut(s)	254
AclI	AACGTT	1 cut(s)	164
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	94
AluBI	AGCT	2 cut(s)	82, 217
AluI	AGCT	2 cut(s)	82, 217
Alw21I	GWGCWC	1 cut(s)	219
Alw26I	GTCTC	1 cut(s)	325
AlwI	GGATC	1 cut(s)	71
Aor13HI	TCCGGA	1 cut(s)	254
ApeKI	GCWGC	1 cut(s)	292
ApoI	RAATTY	1 cut(s)	94
ArsI	GACNNNNNNTTYG	2 cut(s)	69, 101
AspS9I	GGNCC	1 cut(s)	85
AvaII	GGWCC	1 cut(s)	85
BanII	GRGCYC	2 cut(s)	219, 307
BbsI	GAAGAC	1 cut(s)	179
Bbv12I	GWGCWC	1 cut(s)	219
BbvI	GCAGC	1 cut(s)	279
BcgI	CGANNNNNNTGC	2 cut(s)	20, 54
BcoDI	GTCTC	1 cut(s)	325
BfmI	CTRYAG	1 cut(s)	243
BfuAI	ACCTGC	1 cut(s)	319
BisI	GCNGC	1 cut(s)	293
BlsI	GCNGC	1 cut(s)	294
Bme18I	GGWCC	1 cut(s)	85
BmgT120I	GGNCC	1 cut(s)	85
BpiI	GAAGAC	1 cut(s)	179
BpmI	CTGGAG	1 cut(s)	363
BsaBI	GATNNNNATC	1 cut(s)	68
BsaWI	WCCGGW	1 cut(s)	254
Bse1I	ACTGG	2 cut(s)	88, 346
Bse3DI	GCAATG	2 cut(s)	101, 133
Bse8I	GATNNNNATC	1 cut(s)	68
BseAI	TCCGGA	1 cut(s)	254
BseGI	GGATG	1 cut(s)	378
BseJI	GATNNNNATC	1 cut(s)	68
BseMI	GCAATG	2 cut(s)	101, 133
BseNI	ACTGG	2 cut(s)	88, 346
BseXI	GCAGC	1 cut(s)	279
BseYI	CCCAGC	1 cut(s)	295
BsiHKAI	GWGCWC	1 cut(s)	219
BsiSI	CCGG	1 cut(s)	255
BsmAI	GTCTC	1 cut(s)	325
Bsp1286I	GDGCHC	2 cut(s)	219, 307
Bsp13I	TCCGGA	1 cut(s)	254
Bsp143I	GATC	2 cut(s)	63, 319
BspEI	TCCGGA	1 cut(s)	254
BspMI	ACCTGC	1 cut(s)	319
BspPI	GGATC	1 cut(s)	71
BsrDI	GCAATG	2 cut(s)	101, 133
BsrI	ACTGG	2 cut(s)	88, 346
BssMI	GATC	2 cut(s)	63, 319
Bst4CI	ACNGT	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	262
BstF5I	GGATG	1 cut(s)	378
BstKTI	GATC	2 cut(s)	66, 322
BstMAI	GTCTC	1 cut(s)	325
BstMBI	GATC	2 cut(s)	63, 319
BstMWI	GCNNNNNNNGC	2 cut(s)	132, 311
BstNSI	RCATGY	2 cut(s)	229, 264
BstSFI	CTRYAG	1 cut(s)	243
BstV1I	GCAGC	1 cut(s)	279
BstV2I	GAAGAC	1 cut(s)	179
BtsCI	GGATG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	111, 147, 339
BveI	ACCTGC	1 cut(s)	319
Cac8I	GCNNGC	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	85
CviAII	CATG	2 cut(s)	226, 261
CviJI	RGCY	3 cut(s)	82, 217, 305
CviKI_1	RGCY	3 cut(s)	82, 217, 305
DpnI	GATC	2 cut(s)	65, 321
DpnII	GATC	2 cut(s)	63, 319
Ecl136II	GAGCTC	1 cut(s)	217
Eco24I	GRGCYC	2 cut(s)	219, 307
Eco47I	GGWCC	1 cut(s)	85
Eco53kI	GAGCTC	1 cut(s)	217
EcoICRI	GAGCTC	1 cut(s)	217
EcoT22I	ATGCAT	1 cut(s)	43
EcoT38I	GRGCYC	2 cut(s)	219, 307
FaeI	CATG	2 cut(s)	229, 264
FaiI	YATR	5 cut(s)	43, 56, 141, 227, 262
FatI	CATG	2 cut(s)	225, 260
Fnu4HI	GCNGC	1 cut(s)	293
FriOI	GRGCYC	2 cut(s)	219, 307
Fsp4HI	GCNGC	1 cut(s)	293
GluI	GCNGC	1 cut(s)	293
GsaI	CCCAGC	1 cut(s)	299
GsuI	CTGGAG	1 cut(s)	363
HapII	CCGG	1 cut(s)	255
Hin1II	CATG	2 cut(s)	229, 264
HpaII	CCGG	1 cut(s)	255
Hpy166II	GTNNAC	1 cut(s)	223
Hpy188III	TCNNGA	1 cut(s)	255
Hpy8I	GTNNAC	1 cut(s)	223
HpyAV	CCTTC	1 cut(s)	261
HpyCH4III	ACNGT	1 cut(s)	151
HpyCH4IV	ACGT	1 cut(s)	164
HpyCH4V	TGCA	3 cut(s)	41, 203, 358
HpyF10VI	GCNNNNNNNGC	2 cut(s)	132, 311
HpySE526I	ACGT	1 cut(s)	164
Hsp92II	CATG	2 cut(s)	229, 264
Kpn2I	TCCGGA	1 cut(s)	254
Kzo9I	GATC	2 cut(s)	63, 319
LmnI	GCTCC	1 cut(s)	257
LpnPI	CCDG	7 cut(s)	68, 101, 255, 268, 281, 324, 327
Lsp1109I	GCAGC	1 cut(s)	279
MaeII	ACGT	1 cut(s)	164
MaeIII	GTNAC	2 cut(s)	235, 286
MalI	GATC	2 cut(s)	65, 321
MboI	GATC	2 cut(s)	63, 319
MboII	GAAGA	2 cut(s)	184, 289
MhlI	GDGCHC	2 cut(s)	219, 307
MluCI	AATT	1 cut(s)	94
MnlI	CCTC	2 cut(s)	168, 338
Mph1103I	ATGCAT	1 cut(s)	43
MroI	TCCGGA	1 cut(s)	254
MseI	TTAA	2 cut(s)	51, 92
MspI	CCGG	1 cut(s)	255
MwoI	GCNNNNNNNGC	2 cut(s)	132, 311
NdeII	GATC	2 cut(s)	63, 319
NlaIII	CATG	2 cut(s)	229, 264
NmuCI	GTSAC	1 cut(s)	235
NsiI	ATGCAT	1 cut(s)	43
NspI	RCATGY	2 cut(s)	229, 264
PaeI	GCATGC	1 cut(s)	264
PkrI	GCNGC	1 cut(s)	294
Psp124BI	GAGCTC	1 cut(s)	219
Psp1406I	AACGTT	1 cut(s)	164
PspFI	CCCAGC	1 cut(s)	295
PspPI	GGNCC	1 cut(s)	85
SacI	GAGCTC	1 cut(s)	219
SaqAI	TTAA	2 cut(s)	51, 92
SatI	GCNGC	1 cut(s)	293
Sau3AI	GATC	2 cut(s)	63, 319
Sau96I	GGNCC	1 cut(s)	85
SduI	GDGCHC	2 cut(s)	219, 307
SetI	ASST	7 cut(s)	16, 84, 167, 219, 244, 253, 313
SfcI	CTRYAG	1 cut(s)	243
SinI	GGWCC	1 cut(s)	85
SphI	GCATGC	1 cut(s)	264
Sse9I	AATT	1 cut(s)	94
SstI	GAGCTC	1 cut(s)	219
TaaI	ACNGT	1 cut(s)	151
TaiI	ACGT	1 cut(s)	167
TaqI	TCGA	2 cut(s)	170, 267
TasI	AATT	1 cut(s)	94
Tru1I	TTAA	2 cut(s)	51, 92
Tru9I	TTAA	2 cut(s)	51, 92
TscAI	CASTG	3 cut(s)	118, 154, 346
TseFI	GTSAC	1 cut(s)	235
TseI	GCWGC	1 cut(s)	292
Tsp45I	GTSAC	1 cut(s)	235
TspDTI	ATGAA	2 cut(s)	37, 90
TspRI	CASTG	3 cut(s)	118, 154, 346
VpaK11BI	GGWCC	1 cut(s)	85
XapI	RAATTY	1 cut(s)	94
XceI	RCATGY	2 cut(s)	229, 264
Zsp2I	ATGCAT	1 cut(s)	43

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.