RLG00000012125

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000716
Physical Location & Seq
Forward (+)
15498752 .. 15500071
1320 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000012125

Sequence Viewer

Length: 1320 bp
ATGGCTTCCTCTGTTCAATTTTGTTTCCTCTTCTCAACCCTACTCTTAATCTTCACCTCTGCCTCCTTTGCTCAACAATCTTTCAGACCCAAAGCCCTCGTCGTTCCTGTCACAAAAGACGCTTCTACCCTCCAATACACCACTCGTATTGCTCAACGAACCCCTCTAGTCCCCATCAGCCTCGTCCTCGACCTCGGCGGCCAGTTCCTCTGGCTAGACTGCGAGCAAAACTACGTGTCCTCCACGTACCGCCCGGCACGTTGCCGCTCCGCCCAATGCTCACTCGCCGGAGCCAGCGGCTGCGGCGACTGCTTCTCATCCCCCAAACCTGGCTGCAACAACAACACATGCGGCGTCACACCTGACAACACCGTCACACACACCGCCACCGGAGGTGAGCTCGCCCAAGACGTGGTTTCTGTCCGGTCAACTACCGGGTCAAACCCCGGCCAAAACGTTACCGTTTCAAACTTCCTCTTCGCTTGTGCACCGACGTCGCTTTTAAGCGGCCTCGCTGCCGGAGTTTCAGGCATGGCCGGTCTAGGAAGGACTAAAATAGCCCTCTCTTCGCAATTTGCTTCGGCTTTCAGCTTCAAAAGAAAGTTCGCCGTCTGCTTATCCTCCTCCACCTCCGCAAACGGCGTCGCTTTCTTCGGTGACGGGCCGTACTCTCTCCTCCCCGGAATCGATGTTTCCCAGTCCCTCACATACACCCCCCTATTCATCAACCCCGTCAGCACCGCCTCGGCTTTCTCCCAGGGCGACGCCTCGTCGGAATACTTCATCGGCGTGAATTCAATTAAAGTCAACGACAAAGCCGTCGATATTAACACCACCTTGCTCTCCATCAACAACACCTCCGGCGTGGGCGGGACCAAGATCAGCACGGTGAACCCCTACACTGTTCTAGAAGCTTCCATTTTCAAAGCCGTAACTGAAGCATTCGTAACCGAGTCCGCAGCTAGGAATATCTCTAGAGTGGCTGCCGTGGCTCCTTTCGAGGTGTGTTTCAGCACGGAGAACGTGTTGAGCACGCGCCTGGGGCCGTCGGTGCCAGAGATCGACCTGGTGCTGCAAAACGAGAGCACGTACTGGAGAATGTTCGGGGCCAACTCGATGGTGTACGTGAGCGACGACGTTTTCTGCCTAGGGTTTGTGAACGGCGGTGAGAATCCGATGACTTCGATTGTGATCGGCGGGCACCAGTTGGAGGACAATCTTGTGCAGTTTGATTTGGCAGCTTCGAGGGTTGGGTTCAGCTCGACTTTGTTGGGTAGGCAAACTACTTGTTCCAACTTCAACTTCACCTCCGTCGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

440

Amino Acids

46.23

Weight (kDa)

5.5

Isoelectric Point (pI)

29.36

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 46 - 220 1.2e-47 Xylanase inhibitor N-terminal
TAXi_C PF14541 259 - 420 2.5e-60 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 371, 818
AatII GACGTC 1 cut(s) 497
AccB1I GGYRCC 2 cut(s) 1051, 1200
AccB7I CCANNNNNTGG 1 cut(s) 412
AccBSI CCGCTC 1 cut(s) 267
AccII CGCG 1 cut(s) 1036
AclI AACGTT 1 cut(s) 456
AcoI YGGCCR 3 cut(s) 199, 448, 534
AcsI RAATTY 1 cut(s) 793
AcuI CTGAAG 1 cut(s) 957
AcyI GRCGYC 4 cut(s) 354, 494, 642, 765
AfaI GTAC 4 cut(s) 248, 668, 1091, 1124
AfiI CCNNNNNNNGG 4 cut(s) 329, 412, 963, 1210
AflIII ACRYGT 2 cut(s) 234, 1023
AgsI TTSAA 6 cut(s) 17, 468, 595, 798, 925, 1300
AhdI GACNNNNNGTC 1 cut(s) 769
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 4 cut(s) 328, 756, 1038, 1065
AjuI GAANNNNNNNTTGG 2 cut(s) 1286, 1318
AluBI AGCT 6 cut(s) 400, 591, 914, 962, 1241, 1260
AluI AGCT 6 cut(s) 400, 591, 914, 962, 1241, 1260
Alw21I GWGCWC 4 cut(s) 402, 490, 1034, 1088
Alw44I GTGCAC 1 cut(s) 486
AlwNI CAGNNNCTG 1 cut(s) 300
AoxI GGCC 7 cut(s) 199, 448, 508, 534, 662, 1043, 1107
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 7 cut(s) 300, 333, 515, 959, 983, 1072, 1238
ApoI RAATTY 1 cut(s) 793
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
AspA2I CCTAGG 1 cut(s) 1147
AspLEI GCGC 1 cut(s) 1038
AspS9I GGNCC 4 cut(s) 662, 873, 1043, 1107
AsuC2I CCSGG 4 cut(s) 254, 436, 447, 681
AsuHPI GGTGA 6 cut(s) 46, 407, 668, 901, 1178, 1297
AvaII GGWCC 1 cut(s) 873
AvrII CCTAGG 1 cut(s) 1147
BaeGI GKGCMC 2 cut(s) 490, 1203
BanI GGYRCC 2 cut(s) 1051, 1200
BanII GRGCYC 1 cut(s) 402
Bbv12I GWGCWC 4 cut(s) 402, 490, 1034, 1088
BbvI GCAGC 7 cut(s) 287, 320, 502, 970, 971, 1059, 1250
BccI CCATC 3 cut(s) 182, 854, 1111
BceAI ACGGC 8 cut(s) 593, 649, 655, 803, 914, 971, 1030, 1177
BcgI CGANNNNNNTGC 2 cut(s) 477, 511
BciT130I CCWGG 4 cut(s) 330, 758, 1040, 1067
BcnI CCSGG 4 cut(s) 254, 436, 447, 681
BfaI CTAG 8 cut(s) 167, 215, 542, 908, 963, 975, 1148, 1318
BlnI CCTAGG 1 cut(s) 1147
Bme1390I CCNGG 8 cut(s) 254, 330, 436, 447, 681, 758, 1040, 1067
Bme18I GGWCC 1 cut(s) 873
BmeRI GACNNNNNGTC 1 cut(s) 769
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 4 cut(s) 662, 873, 1043, 1107
BmiI GGNNCC 7 cut(s) 292, 874, 993, 1044, 1053, 1108, 1202
BmrFI CCNGG 8 cut(s) 254, 330, 436, 447, 681, 758, 1040, 1067
BmrI ACTGGG 1 cut(s) 691
BmuI ACTGGG 1 cut(s) 691
BplI GAGNNNNNCTC 2 cut(s) 384, 416
BpmI CTGGAG 1 cut(s) 1114
BpuMI CCSGG 4 cut(s) 254, 436, 447, 681
Bsa29I ATCGAT 1 cut(s) 687
BsaAI YACGTR 4 cut(s) 235, 246, 1089, 1126
BsaBI GATNNNNATC 1 cut(s) 1190
BsaHI GRCGYC 4 cut(s) 354, 494, 642, 765
BsaJI CCNNGG 9 cut(s) 193, 445, 679, 744, 756, 757, 987, 1039, 1147
BsaWI WCCGGW 2 cut(s) 389, 423
BsaXI ACNNNNNCTCC 7 cut(s) 224, 254, 842, 872, 1010, 1040, 1292
Bsc4I CCNNNNNNNGG 4 cut(s) 329, 412, 963, 1210
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 4 cut(s) 202, 697, 1097, 1204
Bse8I GATNNNNATC 1 cut(s) 1190
BseBI CCWGG 4 cut(s) 330, 758, 1040, 1067
BseCI ATCGAT 1 cut(s) 687
BseDI CCNNGG 9 cut(s) 193, 445, 679, 744, 756, 757, 987, 1039, 1147
BseGI GGATG 1 cut(s) 317
BseJI GATNNNNATC 1 cut(s) 1190
BseLI CCNNNNNNNGG 4 cut(s) 329, 412, 963, 1210
BseNI ACTGG 4 cut(s) 202, 697, 1097, 1204
BseRI GAGGAG 2 cut(s) 613, 665
BseSI GKGCMC 2 cut(s) 490, 1203
BseXI GCAGC 7 cut(s) 287, 320, 502, 970, 971, 1059, 1250
BsgI GTGCAG 1 cut(s) 1244
Bsh1236I CGCG 1 cut(s) 1036
BshFI GGCC 7 cut(s) 201, 450, 510, 536, 664, 1045, 1109
BshNI GGYRCC 2 cut(s) 1051, 1200
BshVI ATCGAT 1 cut(s) 687
BsiHKAI GWGCWC 4 cut(s) 402, 490, 1034, 1088
BslFI GGGAC 3 cut(s) 155, 685, 886
BslI CCNNNNNNNGG 4 cut(s) 329, 412, 963, 1210
BsmFI GGGAC 3 cut(s) 155, 685, 886
BsmI GAATGC 1 cut(s) 941
BsnI GGCC 7 cut(s) 201, 450, 510, 536, 664, 1045, 1109
Bsp1286I GDGCHC 5 cut(s) 402, 490, 1034, 1088, 1203
Bsp143I GATC 3 cut(s) 879, 1059, 1191
BspANI GGCC 7 cut(s) 201, 450, 510, 536, 664, 1045, 1109
BspDI ATCGAT 1 cut(s) 687
BspFNI CGCG 1 cut(s) 1036
BspLI GGNNCC 7 cut(s) 292, 874, 993, 1044, 1053, 1108, 1202
BspT107I GGYRCC 2 cut(s) 1051, 1200
BsrBI CCGCTC 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 4 cut(s) 202, 697, 1097, 1204
BssAI RCCGGY 1 cut(s) 536
BssECI CCNNGG 9 cut(s) 193, 445, 679, 744, 756, 757, 987, 1039, 1147
BssMI GATC 3 cut(s) 879, 1059, 1191
BssNI GRCGYC 4 cut(s) 354, 494, 642, 765
BssT1I CCWWGG 1 cut(s) 1147
Bst2UI CCWGG 4 cut(s) 330, 758, 1040, 1067
Bst4CI ACNGT 4 cut(s) 373, 463, 889, 904
Bst6I CTCTTC 3 cut(s) 35, 482, 571
BstACI GRCGYC 4 cut(s) 354, 494, 642, 765
BstBAI YACGTR 4 cut(s) 235, 246, 1089, 1126
BstC8I GCNNGC 5 cut(s) 224, 295, 402, 1034, 1199
BstDSI CCRYGG 1 cut(s) 987
BstF5I GGATG 1 cut(s) 317
BstFNI CGCG 1 cut(s) 1036
BstHHI GCGC 1 cut(s) 1038
BstKTI GATC 3 cut(s) 882, 1062, 1194
BstMBI GATC 3 cut(s) 879, 1059, 1191
BstMWI GCNNNNNNNGC 6 cut(s) 68, 303, 309, 989, 1042, 1051
BstNI CCWGG 4 cut(s) 330, 758, 1040, 1067
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 8 cut(s) 252, 328, 434, 445, 679, 756, 1038, 1065
BstSLI GKGCMC 2 cut(s) 490, 1203
BstUI CGCG 1 cut(s) 1036
BstV1I GCAGC 7 cut(s) 287, 320, 502, 970, 971, 1059, 1250
BstXI CCANNNNNNTGG 1 cut(s) 1117
Bsu15I ATCGAT 1 cut(s) 687
BsuRI GGCC 7 cut(s) 201, 450, 510, 536, 664, 1045, 1109
BsuTUI ATCGAT 1 cut(s) 687
BtgI CCRYGG 1 cut(s) 987
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 317
BtsIMutI CAGTG 1 cut(s) 900
Cac8I GCNNGC 5 cut(s) 224, 295, 402, 1034, 1199
CaiI CAGNNNCTG 1 cut(s) 300
CfoI GCGC 1 cut(s) 1038
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 4 cut(s) 662, 873, 1043, 1107
ClaI ATCGAT 1 cut(s) 687
CseI GACGC 4 cut(s) 128, 343, 631, 773
CsiI ACCWGGT 1 cut(s) 1065
Csp6I GTAC 4 cut(s) 247, 667, 1090, 1123
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 2 cut(s) 348, 532
CviQI GTAC 4 cut(s) 247, 667, 1090, 1123
DpnI GATC 3 cut(s) 881, 1061, 1193
DpnII GATC 3 cut(s) 879, 1059, 1191
DrdI GACNNNNNNGTC 2 cut(s) 371, 818
DriI GACNNNNNGTC 1 cut(s) 769
DseDI GACNNNNNNGTC 2 cut(s) 371, 818
EaeI YGGCCR 3 cut(s) 199, 448, 534
Eam1104I CTCTTC 3 cut(s) 35, 482, 571
Eam1105I GACNNNNNGTC 1 cut(s) 769
EarI CTCTTC 3 cut(s) 35, 482, 571
EciI GGCGGA 1 cut(s) 259
Ecl136II GAGCTC 1 cut(s) 400
Eco130I CCWWGG 1 cut(s) 1147
Eco24I GRGCYC 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 957
EcoICRI GAGCTC 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 793
EcoRII CCWGG 4 cut(s) 328, 756, 1038, 1065
EcoT14I CCWWGG 1 cut(s) 1147
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 1147
FaeI CATG 2 cut(s) 351, 535
FaiI YATR 3 cut(s) 349, 533, 709
FaqI GGGAC 3 cut(s) 155, 685, 886
FatI CATG 2 cut(s) 347, 531
FauI CCCGC 2 cut(s) 863, 1190
FokI GGATG 1 cut(s) 304
FriOI GRGCYC 1 cut(s) 402
FspBI CTAG 8 cut(s) 167, 215, 542, 908, 963, 975, 1148, 1318
GlaI GCGC 1 cut(s) 1037
GsuI CTGGAG 1 cut(s) 1114
HaeIII GGCC 7 cut(s) 201, 450, 510, 536, 664, 1045, 1109
HgaI GACGC 4 cut(s) 128, 343, 631, 773
HhaI GCGC 1 cut(s) 1038
Hin1I GRCGYC 4 cut(s) 354, 494, 642, 765
Hin1II CATG 2 cut(s) 351, 535
Hin6I GCGC 1 cut(s) 1036
HinP1I GCGC 1 cut(s) 1036
HincII GTYRAC 2 cut(s) 429, 808
HindII GTYRAC 2 cut(s) 429, 808
HindIII AAGCTT 1 cut(s) 912
HinfI GANTC 3 cut(s) 684, 953, 1171
HphI GGTGA 6 cut(s) 46, 407, 668, 901, 1178, 1297
Hpy166II GTNNAC 6 cut(s) 429, 488, 808, 892, 1123, 1159
Hpy188I TCNGA 3 cut(s) 86, 775, 1176
Hpy188III TCNNGA 2 cut(s) 908, 975
Hpy8I GTNNAC 6 cut(s) 429, 488, 808, 892, 1123, 1159
HpyAV CCTTC 1 cut(s) 540
HpyCH4III ACNGT 4 cut(s) 373, 463, 889, 904
HpyCH4V TGCA 4 cut(s) 336, 488, 1075, 1225
HpyF10VI GCNNNNNNNGC 6 cut(s) 68, 303, 309, 989, 1042, 1051
Hsp92I GRCGYC 4 cut(s) 354, 494, 642, 765
Hsp92II CATG 2 cut(s) 351, 535
HspAI GCGC 1 cut(s) 1036
Kzo9I GATC 3 cut(s) 879, 1059, 1191
LmnI GCTCC 3 cut(s) 272, 290, 997
Lsp1109I GCAGC 7 cut(s) 287, 320, 502, 970, 971, 1059, 1250
MabI ACCWGGT 1 cut(s) 1065
MaeI CTAG 8 cut(s) 167, 215, 542, 908, 963, 975, 1148, 1318
MaeIII GTNAC 7 cut(s) 109, 355, 373, 457, 656, 931, 946
MalI GATC 3 cut(s) 881, 1061, 1193
MbiI CCGCTC 1 cut(s) 267
MboI GATC 3 cut(s) 879, 1059, 1191
MboII GAAGA 5 cut(s) 22, 43, 469, 558, 643
MhlI GDGCHC 5 cut(s) 402, 490, 1034, 1088, 1203
MluCI AATT 4 cut(s) 17, 572, 793, 798
MlyI GAGTC 1 cut(s) 962
MmeI TCCRAC 3 cut(s) 753, 1188, 1317
MseI TTAA 4 cut(s) 47, 503, 801, 828
MslI CAYNNNNRTG 1 cut(s) 788
MspA1I CMGCKG 1 cut(s) 297
MspR9I CCNGG 8 cut(s) 254, 330, 436, 447, 681, 758, 1040, 1067
Mva1269I GAATGC 1 cut(s) 941
MvaI CCWGG 4 cut(s) 330, 758, 1040, 1067
MvnI CGCG 1 cut(s) 1036
MwoI GCNNNNNNNGC 6 cut(s) 68, 303, 309, 989, 1042, 1051
NciI CCSGG 4 cut(s) 254, 436, 447, 681
NdeII GATC 3 cut(s) 879, 1059, 1191
NlaIII CATG 2 cut(s) 351, 535
NlaIV GGNNCC 7 cut(s) 292, 874, 993, 1044, 1053, 1108, 1202
NmeAIII GCCGAG 2 cut(s) 174, 725
NmuCI GTSAC 4 cut(s) 109, 355, 373, 656
NspI RCATGY 1 cut(s) 351
PasI CCCWGGG 1 cut(s) 757
PcsI WCGNNNNNNNCGW 3 cut(s) 408, 816, 1131
PctI GAATGC 1 cut(s) 941
PfeI GAWTC 2 cut(s) 684, 1171
PflMI CCANNNNNTGG 1 cut(s) 412
PleI GAGTC 1 cut(s) 961
PpsI GAGTC 1 cut(s) 961
Ppu21I YACGTR 4 cut(s) 235, 246, 1089, 1126
Psp124BI GAGCTC 1 cut(s) 402
Psp1406I AACGTT 1 cut(s) 456
Psp6I CCWGG 4 cut(s) 328, 756, 1038, 1065
PspGI CCWGG 4 cut(s) 328, 756, 1038, 1065
PspN4I GGNNCC 7 cut(s) 292, 874, 993, 1044, 1053, 1108, 1202
PspPI GGNCC 4 cut(s) 662, 873, 1043, 1107
PstNI CAGNNNCTG 1 cut(s) 300
RsaI GTAC 4 cut(s) 248, 668, 1091, 1124
RsaNI GTAC 4 cut(s) 247, 667, 1090, 1123
RseI CAYNNNNRTG 1 cut(s) 788
SacI GAGCTC 1 cut(s) 402
SaqAI TTAA 4 cut(s) 47, 503, 801, 828
Sau3AI GATC 3 cut(s) 879, 1059, 1191
Sau96I GGNCC 4 cut(s) 662, 873, 1043, 1107
SchI GAGTC 1 cut(s) 962
ScrFI CCNGG 8 cut(s) 254, 330, 436, 447, 681, 758, 1040, 1067
SduI GDGCHC 5 cut(s) 402, 490, 1034, 1088, 1203
SexAI ACCWGGT 1 cut(s) 1065
SinI GGWCC 1 cut(s) 873
SmiMI CAYNNNNRTG 1 cut(s) 788
Sse9I AATT 4 cut(s) 17, 572, 793, 798
SspMI CTAG 8 cut(s) 167, 215, 542, 908, 963, 975, 1148, 1318
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 8 cut(s) 252, 328, 434, 445, 679, 756, 1038, 1065
StyI CCWWGG 1 cut(s) 1147
TaaI ACNGT 4 cut(s) 373, 463, 889, 904
TaqI TCGA 9 cut(s) 189, 687, 822, 999, 1062, 1115, 1184, 1244, 1262
TasI AATT 4 cut(s) 17, 572, 793, 798
TauI GCSGC 6 cut(s) 201, 267, 300, 306, 354, 510
TfiI GAWTC 2 cut(s) 684, 1171
Tru1I TTAA 4 cut(s) 47, 503, 801, 828
Tru9I TTAA 4 cut(s) 47, 503, 801, 828
TscAI CASTG 1 cut(s) 907
TseFI GTSAC 4 cut(s) 109, 355, 373, 656
TseI GCWGC 7 cut(s) 300, 333, 515, 959, 983, 1072, 1238
Tsp45I GTSAC 4 cut(s) 109, 355, 373, 656
TspDTI ATGAA 2 cut(s) 712, 772
TspGWI ACGGA 2 cut(s) 1031, 1300
TspRI CASTG 1 cut(s) 907
Van91I CCANNNNNTGG 1 cut(s) 412
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 873
XapI RAATTY 1 cut(s) 793
XbaI TCTAGA 2 cut(s) 907, 974
XceI RCATGY 1 cut(s) 351
XmaJI CCTAGG 1 cut(s) 1147
XspI CTAG 8 cut(s) 167, 215, 542, 908, 963, 975, 1148, 1318
ZraI GACGTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.