Rw4G018050

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000716
Physical Location & Seq
Forward (+)
40246406 .. 40248072
1667 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G018050.1

Sequence Viewer

Length: 1065 bp
ATGGCTTCCCCTTCCCATTGCCCTCTCTTCTGCTCAGTGCTAGTGATCTTCCAAATTATCACTACCCCCTCGCTGGCCAAAACATCATTCCGACCCCAGGCCCTCGTTTTTCCGCAAAGAACTCCTCTTGTGTCACTAAAGCTCACCGTGAATCTTGGCGGTCAATACATTTGGGTGGATTGCGACGATGGCTACGTCTCCTCGACCTACAAGCCTTCCCATTGCAAATCTGCACAATGCTCACTTGCAAAAAGCCCGATTTGTACCATGTACAACGCCGCCCCTAGTCCCGAATCTTCTCTTTTATCTCTGGTGGACTCCAGAACCCTTTGTTTAGGTTTATCGCTTGTAAACCTAGTTTATCATTCCGACTGCGTCAAGCTTGAGCATCGGCAGCTGAGGCCAACTCGGTCAAGACACTGCATGGCCGATCTTGGCAGGAGCAAAATTGGCCTCCCCTCCCAATTTGCTGCAGCTTGTAGCTTCCGTAGAAAATTTGCCATTTGCTTGAGCTCATCAAAAGGTGTCACATTCTTCAGAAATGCACCTTACAATTTGCTTCCGAGTGAGCAGTCTGCCGAATACTTCATCGGGGTAAGGTCAATCAAGATCAGTGGAAAACATGTTTCATTAAACACTTCATTACTAACCATTAATGCAAACGGTTACGGAGGCACCAAGATAAGCACCGTGAATCCATATTCCAGGAACAACATCCAGAAAGTGGCATCTGTAGCGCATTTCGGAGCATGCTTCAACACGAAGGACATTGCCACAACAAGGGCCGGTTCGGTTGTGCCTCTGATACATCTTGTGCTCCAGAGCGAGAGCGTGTACTGGAGGATTGTTGGAGCAAACTCAATGGTGTGCATGAGCAATGAGGTCCTGTGTTTAGGCTTTGTGGACGGTGGTGTGGAGCAGAGAACTTCGATTGTGATTGGAGGGCATCAAATGGACGACAATCTTCTACTGTTTGATTTGGCTGCTAATAAGCTTGGGTTCAGCTCTTCACTCTTGTCCCAACAAACCAGTTTCGCCAACTTCAACTTCACATCTATTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

354

Amino Acids

38.46

Weight (kDa)

9.2

Isoelectric Point (pI)

48.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 39 - 85 1.4e-08 Xylanase inhibitor N-terminal
TAXi_N PF14543 139 - 179 1.9e-06 Xylanase inhibitor N-terminal
TAXi_C PF14541 194 - 235 4.6e-09 Xylanase inhibitor C-terminal
TAXi_C PF14541 236 - 335 1.3e-31 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 674
AccB7I CCANNNNNTGG 1 cut(s) 724
AciI CCGC 3 cut(s) 113, 159, 279
AcoI YGGCCR 2 cut(s) 75, 426
AcsI RAATTY 1 cut(s) 494
AcuI CTGAAG 1 cut(s) 520
AfaI GTAC 3 cut(s) 265, 272, 836
AfiI CCNNNNNNNGG 4 cut(s) 73, 97, 724, 780
AflIII ACRYGT 1 cut(s) 622
AgsI TTSAA 2 cut(s) 757, 1045
AjnI CCWGG 2 cut(s) 96, 704
AjuI GAANNNNNNNTTGG 4 cut(s) 71, 103, 1031, 1063
AluBI AGCT 8 cut(s) 142, 382, 397, 476, 483, 513, 994, 1005
AluI AGCT 8 cut(s) 142, 382, 397, 476, 483, 513, 994, 1005
Alw21I GWGCWC 2 cut(s) 515, 819
Alw26I GTCTC 1 cut(s) 202
AoxI GGCC 6 cut(s) 75, 99, 401, 426, 451, 783
ApeKI GCWGC 4 cut(s) 394, 470, 473, 983
ApoI RAATTY 1 cut(s) 494
AseI ATTAAT 1 cut(s) 654
AspLEI GCGC 1 cut(s) 739
AspS9I GGNCC 3 cut(s) 100, 783, 883
AsuHPI GGTGA 1 cut(s) 136
AvaII GGWCC 1 cut(s) 883
BalI TGGCCA 1 cut(s) 77
BanI GGYRCC 1 cut(s) 674
BanII GRGCYC 1 cut(s) 515
Bbv12I GWGCWC 2 cut(s) 515, 819
BbvCI CCTCAGC 1 cut(s) 398
BbvI GCAGC 4 cut(s) 406, 457, 485, 970
BccI CCATC 1 cut(s) 182
BciT130I CCWGG 2 cut(s) 98, 706
BcoDI GTCTC 1 cut(s) 202
BfaI CTAG 3 cut(s) 41, 285, 356
BfmI CTRYAG 2 cut(s) 471, 732
BisI GCNGC 5 cut(s) 279, 395, 471, 474, 984
BlsI GCNGC 5 cut(s) 280, 396, 472, 475, 985
Bme1390I CCNGG 2 cut(s) 98, 706
Bme18I GGWCC 1 cut(s) 883
BmgT120I GGNCC 3 cut(s) 100, 783, 883
BmiI GGNNCC 1 cut(s) 676
BmrFI CCNGG 2 cut(s) 98, 706
BmsI GCATC 3 cut(s) 397, 737, 955
BplI GAGNNNNNCTC 2 cut(s) 391, 423
BpmI CTGGAG 3 cut(s) 304, 803, 859
Bpu10I CCTNAGC 1 cut(s) 398
BpuEI CTTGAG 2 cut(s) 404, 529
BsaJI CCNNGG 1 cut(s) 96
Bsc4I CCNNNNNNNGG 4 cut(s) 73, 97, 724, 780
Bse118I RCCGGY 1 cut(s) 785
Bse1I ACTGG 2 cut(s) 842, 1029
Bse3DI GCAATG 4 cut(s) 16, 220, 768, 883
BseBI CCWGG 2 cut(s) 98, 706
BseDI CCNNGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 714
BseLI CCNNNNNNNGG 4 cut(s) 73, 97, 724, 780
BseMI GCAATG 4 cut(s) 16, 220, 768, 883
BseMII CTCAG 2 cut(s) 48, 389
BseNI ACTGG 2 cut(s) 842, 1029
BseRI GAGGAG 2 cut(s) 114, 190
BseXI GCAGC 4 cut(s) 406, 457, 485, 970
BsgI GTGCAG 1 cut(s) 216
BshFI GGCC 6 cut(s) 77, 101, 403, 428, 453, 785
BshNI GGYRCC 1 cut(s) 674
BsiHKAI GWGCWC 2 cut(s) 515, 819
BsiSI CCGG 1 cut(s) 786
BslFI GGGAC 2 cut(s) 273, 1003
BslI CCNNNNNNNGG 4 cut(s) 73, 97, 724, 780
BsmAI GTCTC 1 cut(s) 202
BsmBI CGTCTC 1 cut(s) 202
BsmFI GGGAC 2 cut(s) 273, 1003
BsnI GGCC 6 cut(s) 77, 101, 403, 428, 453, 785
Bsp1286I GDGCHC 2 cut(s) 515, 819
Bsp1407I TGTACA 1 cut(s) 270
Bsp143I GATC 3 cut(s) 45, 430, 609
BspACI CCGC 3 cut(s) 113, 159, 279
BspANI GGCC 6 cut(s) 77, 101, 403, 428, 453, 785
BspCNI CTCAG 2 cut(s) 47, 390
BspLI GGNNCC 1 cut(s) 676
BspMAI CTGCAG 1 cut(s) 475
BspQI GCTCTTC 1 cut(s) 1012
BspT107I GGYRCC 1 cut(s) 674
BsrDI GCAATG 4 cut(s) 16, 220, 768, 883
BsrFI RCCGGY 1 cut(s) 785
BsrGI TGTACA 1 cut(s) 270
BsrI ACTGG 2 cut(s) 842, 1029
BssAI RCCGGY 1 cut(s) 785
BssECI CCNNGG 1 cut(s) 96
BssMI GATC 3 cut(s) 45, 430, 609
Bst2UI CCWGG 2 cut(s) 98, 706
Bst4CI ACNGT 5 cut(s) 148, 665, 691, 908, 972
Bst6I CTCTTC 2 cut(s) 32, 1012
BstAUI TGTACA 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 75, 751
BstDEI CTNAG 2 cut(s) 34, 398
BstF5I GGATG 1 cut(s) 714
BstHHI GCGC 1 cut(s) 739
BstKTI GATC 3 cut(s) 48, 433, 612
BstMAI GTCTC 1 cut(s) 202
BstMBI GATC 3 cut(s) 45, 430, 609
BstMWI GCNNNNNNNGC 5 cut(s) 189, 394, 400, 450, 734
BstNI CCWGG 2 cut(s) 98, 706
BstNSI RCATGY 2 cut(s) 626, 753
BstSCI CCNGG 2 cut(s) 96, 704
BstSFI CTRYAG 2 cut(s) 471, 732
BstV1I GCAGC 4 cut(s) 406, 457, 485, 970
BsuRI GGCC 6 cut(s) 77, 101, 403, 428, 453, 785
BtsCI GGATG 1 cut(s) 714
BtsI GCAGTG 1 cut(s) 418
BtsIMutI CAGTG 3 cut(s) 42, 418, 619
Cac8I GCNNGC 2 cut(s) 75, 751
CfoI GCGC 1 cut(s) 739
Cfr10I RCCGGY 1 cut(s) 785
Cfr13I GGNCC 3 cut(s) 100, 783, 883
CseI GACGC 1 cut(s) 364
Csp6I GTAC 3 cut(s) 264, 271, 835
CspCI CAANNNNNGTGG 2 cut(s) 595, 630
CviAII CATG 5 cut(s) 268, 424, 623, 750, 871
CviQI GTAC 3 cut(s) 264, 271, 835
DdeI CTNAG 2 cut(s) 34, 398
DpnI GATC 3 cut(s) 47, 432, 611
DpnII GATC 3 cut(s) 45, 430, 609
EaeI YGGCCR 2 cut(s) 75, 426
Eam1104I CTCTTC 2 cut(s) 32, 1012
EarI CTCTTC 2 cut(s) 32, 1012
Ecl136II GAGCTC 1 cut(s) 513
Eco24I GRGCYC 1 cut(s) 515
Eco47I GGWCC 1 cut(s) 883
Eco53kI GAGCTC 1 cut(s) 513
Eco57I CTGAAG 1 cut(s) 520
EcoICRI GAGCTC 1 cut(s) 513
EcoO109I RGGNCCY 2 cut(s) 100, 883
EcoRII CCWGG 2 cut(s) 96, 704
EcoT38I GRGCYC 1 cut(s) 515
Esp3I CGTCTC 1 cut(s) 202
FaeI CATG 5 cut(s) 271, 427, 626, 753, 874
FaiI YATR 6 cut(s) 269, 425, 624, 700, 751, 872
FaqI GGGAC 2 cut(s) 273, 1003
FatI CATG 5 cut(s) 267, 423, 622, 749, 870
Fnu4HI GCNGC 5 cut(s) 279, 395, 471, 474, 984
FokI GGATG 1 cut(s) 701
FriOI GRGCYC 1 cut(s) 515
Fsp4HI GCNGC 5 cut(s) 279, 395, 471, 474, 984
FspBI CTAG 3 cut(s) 41, 285, 356
GlaI GCGC 1 cut(s) 738
GluI GCNGC 5 cut(s) 279, 395, 471, 474, 984
GsuI CTGGAG 3 cut(s) 304, 803, 859
HaeIII GGCC 6 cut(s) 77, 101, 403, 428, 453, 785
HapII CCGG 1 cut(s) 786
HgaI GACGC 1 cut(s) 364
HhaI GCGC 1 cut(s) 739
Hin1II CATG 5 cut(s) 271, 427, 626, 753, 874
Hin6I GCGC 1 cut(s) 737
HinP1I GCGC 1 cut(s) 737
HindIII AAGCTT 2 cut(s) 380, 992
HinfI GANTC 4 cut(s) 151, 293, 317, 694
HpaII CCGG 1 cut(s) 786
HphI GGTGA 1 cut(s) 136
Hpy166II GTNNAC 4 cut(s) 316, 352, 835, 904
Hpy188I TCNGA 6 cut(s) 92, 370, 539, 564, 746, 804
Hpy188III TCNNGA 6 cut(s) 290, 321, 414, 607, 718, 820
Hpy8I GTNNAC 4 cut(s) 316, 352, 835, 904
Hpy99I CGWCG 1 cut(s) 188
HpyAV CCTTC 3 cut(s) 21, 225, 757
HpyCH4III ACNGT 5 cut(s) 148, 665, 691, 908, 972
HpyCH4IV ACGT 1 cut(s) 195
HpyCH4V TGCA 8 cut(s) 225, 233, 248, 423, 473, 545, 659, 870
HpyF10VI GCNNNNNNNGC 5 cut(s) 189, 394, 400, 450, 734
HpyF3I CTNAG 2 cut(s) 34, 398
HpySE526I ACGT 1 cut(s) 195
Hsp92II CATG 5 cut(s) 271, 427, 626, 753, 874
HspAI GCGC 1 cut(s) 737
Kzo9I GATC 3 cut(s) 45, 430, 609
LguI GCTCTTC 1 cut(s) 1012
LmnI GCTCC 5 cut(s) 441, 746, 822, 851, 916
Lsp1109I GCAGC 4 cut(s) 406, 457, 485, 970
LweI GCATC 3 cut(s) 397, 737, 955
MaeI CTAG 3 cut(s) 41, 285, 356
MaeII ACGT 1 cut(s) 195
MaeIII GTNAC 3 cut(s) 132, 526, 665
MalI GATC 3 cut(s) 47, 432, 611
MboI GATC 3 cut(s) 45, 430, 609
MboII GAAGA 6 cut(s) 19, 40, 288, 526, 956, 999
MhlI GDGCHC 2 cut(s) 515, 819
MlsI TGGCCA 1 cut(s) 77
MluCI AATT 5 cut(s) 54, 447, 464, 494, 553
MluNI TGGCCA 1 cut(s) 77
MlyI GAGTC 1 cut(s) 311
MmeI TCCRAC 3 cut(s) 115, 393, 829
Mox20I TGGCCA 1 cut(s) 77
MscI TGGCCA 1 cut(s) 77
MseI TTAA 2 cut(s) 632, 654
MslI CAYNNNNRTG 1 cut(s) 173
Msp20I TGGCCA 1 cut(s) 77
MspA1I CMGCKG 1 cut(s) 397
MspI CCGG 1 cut(s) 786
MspR9I CCNGG 2 cut(s) 98, 706
MvaI CCWGG 2 cut(s) 98, 706
MwoI GCNNNNNNNGC 5 cut(s) 189, 394, 400, 450, 734
NdeII GATC 3 cut(s) 45, 430, 609
NlaIII CATG 5 cut(s) 271, 427, 626, 753, 874
NlaIV GGNNCC 1 cut(s) 676
NmuCI GTSAC 2 cut(s) 132, 526
NspI RCATGY 2 cut(s) 626, 753
PaeI GCATGC 1 cut(s) 753
PciI ACATGT 1 cut(s) 622
PciSI GCTCTTC 1 cut(s) 1012
PcsI WCGNNNNNNNCGW 1 cut(s) 192
PfeI GAWTC 3 cut(s) 151, 293, 694
PflFI GACNNNGTC 1 cut(s) 374
PflMI CCANNNNNTGG 1 cut(s) 724
PfoI TCCNGGA 1 cut(s) 704
PkrI GCNGC 5 cut(s) 280, 396, 472, 475, 985
PleI GAGTC 1 cut(s) 311
PpsI GAGTC 1 cut(s) 311
PpuMI RGGWCCY 1 cut(s) 883
PscI ACATGT 1 cut(s) 622
PshBI ATTAAT 1 cut(s) 654
Psp124BI GAGCTC 1 cut(s) 515
Psp5II RGGWCCY 1 cut(s) 883
Psp6I CCWGG 2 cut(s) 96, 704
PspGI CCWGG 2 cut(s) 96, 704
PspN4I GGNNCC 1 cut(s) 676
PspPI GGNCC 3 cut(s) 100, 783, 883
PspPPI RGGWCCY 1 cut(s) 883
PstI CTGCAG 1 cut(s) 475
PsyI GACNNNGTC 1 cut(s) 374
PvuII CAGCTG 1 cut(s) 397
RsaI GTAC 3 cut(s) 265, 272, 836
RsaNI GTAC 3 cut(s) 264, 271, 835
RseI CAYNNNNRTG 1 cut(s) 173
SacI GAGCTC 1 cut(s) 515
SapI GCTCTTC 1 cut(s) 1012
SaqAI TTAA 2 cut(s) 632, 654
SatI GCNGC 5 cut(s) 279, 395, 471, 474, 984
Sau3AI GATC 3 cut(s) 45, 430, 609
Sau96I GGNCC 3 cut(s) 100, 783, 883
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 2 cut(s) 98, 706
SduI GDGCHC 2 cut(s) 515, 819
SfaNI GCATC 3 cut(s) 397, 737, 955
SfcI CTRYAG 2 cut(s) 471, 732
SinI GGWCC 1 cut(s) 883
SmiMI CAYNNNNRTG 1 cut(s) 173
SmlI CTYRAG 2 cut(s) 383, 508
SmoI CTYRAG 2 cut(s) 383, 508
SphI GCATGC 1 cut(s) 753
Sse9I AATT 5 cut(s) 54, 447, 464, 494, 553
SsiI CCGC 3 cut(s) 113, 159, 279
SspMI CTAG 3 cut(s) 41, 285, 356
SstI GAGCTC 1 cut(s) 515
StyD4I CCNGG 2 cut(s) 96, 704
TaaI ACNGT 5 cut(s) 148, 665, 691, 908, 972
TaiI ACGT 1 cut(s) 198
TaqI TCGA 2 cut(s) 203, 929
TaqII GACCGA 1 cut(s) 399
TasI AATT 5 cut(s) 54, 447, 464, 494, 553
TatI WGTACW 2 cut(s) 270, 834
TauI GCSGC 1 cut(s) 281
TfiI GAWTC 3 cut(s) 151, 293, 694
Tru1I TTAA 2 cut(s) 632, 654
Tru9I TTAA 2 cut(s) 632, 654
TscAI CASTG 3 cut(s) 42, 425, 619
TseFI GTSAC 2 cut(s) 132, 526
TseI GCWGC 4 cut(s) 394, 470, 473, 983
Tsp45I GTSAC 2 cut(s) 132, 526
TspDTI ATGAA 3 cut(s) 577, 618, 630
TspGWI ACGGA 2 cut(s) 476, 684
TspRI CASTG 3 cut(s) 42, 425, 619
Tth111I GACNNNGTC 1 cut(s) 374
Van91I CCANNNNNTGG 1 cut(s) 724
VpaK11BI GGWCC 1 cut(s) 883
VspI ATTAAT 1 cut(s) 654
XapI RAATTY 1 cut(s) 494
XceI RCATGY 2 cut(s) 626, 753
XspI CTAG 3 cut(s) 41, 285, 356
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.