Rh6DG330900

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000716
Physical Location & Seq
Reverse (-)
53525801 .. 53527332
1532 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG330900.1

Sequence Viewer

Length: 1320 bp
ATGGCTTCCTCTGTTCAATTTTGTGCCCTCTTCTCAACCCTACTCTTAATCTTCACATCTGCCACCTTTGCTCAACAATCCTTCAAACCCAAAGCCCTCGTCGTTCCGGTCACAAAAGACGCTTCTACCCTCCAATACACCACTCGTATTGCTCAACGAACCCCTCTCGTCCCCATCAGCCTTGTCCTCGACCTCGGCGGCCAGTTCCTCTGGGTAGACTGCGAGCAAAACTACGTGTCCTCCACGTACCGCCCGGCACGTTGCCGCTCCGCCCAATGCTCACTCGCAGGAGCCAGCGGCTGTGGTGACTGTTTCTCATCCCCCAAACCTGGCTGCAACAACAACACATGCGGCGTCACACCTGACAACACCGTCACACGCACCGCCACGGGCGGTGAGCTCGCCCAAGACGTGGTTTCTGTCCAGTCAACGACCGGGTCAAACCCCGGCCAAAACGTTACCGTTTCAAACTTCCTCTTCGCTTGTGCACCGACGTCGCTTTTAAGCGGCCTCGCTGCCGGAGTTTCCGGCATGGCCGGTCTAGGAAGGACTAAAATAGCCCTCTCTTCGCAATTTGCTTCGGCTTTCAGCTTCAAAAGAAAGTTCGCCGTCTGCTTATCCTCCTCCACCTCCGCAAATGGAGTCGCTTTCTTCGGTGACGGGCCGTACTCTCTCCTCCCAGGAATCGACGTTTCCCAGTCCCTCACATACAGCCCTCTCTTCATCAACCCCGTTAGCACCGCCTCGGCTTTCTCCCAGGGCGACGCCTCCTCGGAATACTTCATCGGCGTGAATTCAATCAAAGTCAACGACAAAGCCGTCGATATTAACACCACCTTGCTCTCCATCAACAACTCCTCCGGCGTGGGCGGGACCAAGATCAGCACGGTGAATCCCTACACTGTTCTAGAAGCTTCCATTTTCAAAGCCGTAACTGAAGCATTCGTAACCGAGTCCGCGGCTAGGAATATCTCTAGAGTAGCTGCTGTGGCTCCCTTCGAGGTGTGTTTCAGCACGGAGAACGTGTTGAGCACGCGCCTGGGGCCGTCGGTACCAGAGATCGACCTGGTGCTGCAGAATGAGAGCACGTACTGGAGAATGTTCGGGGCCAACTCAATGGTGTACGTAAGCGACGACGTTTTGTGCCTAGGGTTTGTGAACGGCGGAGAGAATGCGATGACTTCGATTGTGATCGGCGGGCACCAGTTGGAGGACAATCTTGTGCAGTTTGATTTGGCAGCTTCGAGGGTTGGGTTCAGCTCGACTTTGTTAGGGAGGCAAACTACTTGTTCCAACTTCAACTTCACCTCCGTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

439

Amino Acids

46.03

Weight (kDa)

5.33

Isoelectric Point (pI)

30.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 46 - 220 5.4e-48 Xylanase inhibitor N-terminal
TAXi_C PF14541 259 - 420 4.2e-60 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 371, 818
AatII GACGTC 1 cut(s) 497
Acc65I GGTACC 1 cut(s) 1051
AccB1I GGYRCC 2 cut(s) 1051, 1200
AccB7I CCANNNNNTGG 1 cut(s) 412
AccBSI CCGCTC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 216
AccII CGCG 2 cut(s) 959, 1036
AclI AACGTT 1 cut(s) 456
AcoI YGGCCR 3 cut(s) 199, 448, 534
AcsI RAATTY 1 cut(s) 793
AcuI CTGAAG 1 cut(s) 957
AcyI GRCGYC 3 cut(s) 354, 494, 765
AfaI GTAC 5 cut(s) 248, 668, 1053, 1091, 1124
AfiI CCNNNNNNNGG 4 cut(s) 329, 412, 963, 1210
AflIII ACRYGT 2 cut(s) 234, 1023
AgsI TTSAA 7 cut(s) 17, 85, 468, 595, 798, 925, 1300
AjiI CACGTC 1 cut(s) 412
AjnI CCWGG 5 cut(s) 328, 679, 756, 1038, 1065
AjuI GAANNNNNNNTTGG 2 cut(s) 1286, 1318
AluBI AGCT 6 cut(s) 400, 591, 914, 983, 1241, 1260
AluI AGCT 6 cut(s) 400, 591, 914, 983, 1241, 1260
Alw21I GWGCWC 4 cut(s) 402, 490, 1034, 1088
Alw44I GTGCAC 1 cut(s) 486
AlwNI CAGNNNCTG 1 cut(s) 300
AoxI GGCC 7 cut(s) 199, 448, 508, 534, 662, 1043, 1107
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 5 cut(s) 333, 515, 983, 1072, 1238
ApoI RAATTY 1 cut(s) 793
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
Asp718I GGTACC 1 cut(s) 1051
AspA2I CCTAGG 1 cut(s) 1147
AspLEI GCGC 1 cut(s) 1038
AspS9I GGNCC 4 cut(s) 662, 873, 1043, 1107
AsuC2I CCSGG 3 cut(s) 254, 436, 447
AsuHPI GGTGA 5 cut(s) 317, 407, 668, 901, 1297
AvaII GGWCC 1 cut(s) 873
AvrII CCTAGG 1 cut(s) 1147
BaeGI GKGCMC 3 cut(s) 28, 490, 1203
BanI GGYRCC 2 cut(s) 1051, 1200
BanII GRGCYC 1 cut(s) 402
Bbv12I GWGCWC 4 cut(s) 402, 490, 1034, 1088
BbvI GCAGC 5 cut(s) 320, 502, 970, 1059, 1250
BccI CCATC 2 cut(s) 182, 854
BceAI ACGGC 6 cut(s) 593, 649, 803, 914, 1030, 1177
BcgI CGANNNNNNTGC 2 cut(s) 477, 511
BciT130I CCWGG 5 cut(s) 330, 681, 758, 1040, 1067
BcnI CCSGG 3 cut(s) 254, 436, 447
BfaI CTAG 6 cut(s) 542, 908, 963, 975, 1148, 1318
BfmI CTRYAG 1 cut(s) 1073
BlnI CCTAGG 1 cut(s) 1147
Bme1390I CCNGG 8 cut(s) 254, 330, 436, 447, 681, 758, 1040, 1067
Bme18I GGWCC 1 cut(s) 873
BmgBI CACGTC 1 cut(s) 412
BmgT120I GGNCC 4 cut(s) 662, 873, 1043, 1107
BmiI GGNNCC 7 cut(s) 292, 874, 993, 1044, 1053, 1108, 1202
BmrFI CCNGG 8 cut(s) 254, 330, 436, 447, 681, 758, 1040, 1067
BmrI ACTGGG 1 cut(s) 691
BmuI ACTGGG 1 cut(s) 691
BpmI CTGGAG 1 cut(s) 1114
BpuMI CCSGG 3 cut(s) 254, 436, 447
BsaAI YACGTR 4 cut(s) 235, 246, 1089, 1126
BsaBI GATNNNNATC 1 cut(s) 1190
BsaHI GRCGYC 3 cut(s) 354, 494, 765
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 7 cut(s) 224, 254, 842, 872, 1010, 1040, 1292
Bsc4I CCNNNNNNNGG 4 cut(s) 329, 412, 963, 1210
Bse118I RCCGGY 1 cut(s) 536
Bse1I ACTGG 5 cut(s) 202, 424, 697, 1097, 1204
Bse8I GATNNNNATC 1 cut(s) 1190
BseBI CCWGG 5 cut(s) 330, 681, 758, 1040, 1067
BseGI GGATG 1 cut(s) 317
BseJI GATNNNNATC 1 cut(s) 1190
BseLI CCNNNNNNNGG 4 cut(s) 329, 412, 963, 1210
BseNI ACTGG 5 cut(s) 202, 424, 697, 1097, 1204
BseRI GAGGAG 4 cut(s) 613, 665, 760, 847
BseSI GKGCMC 3 cut(s) 28, 490, 1203
BseXI GCAGC 5 cut(s) 320, 502, 970, 1059, 1250
BsgI GTGCAG 1 cut(s) 1244
Bsh1236I CGCG 2 cut(s) 959, 1036
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 7 cut(s) 201, 450, 510, 536, 664, 1045, 1109
BshNI GGYRCC 2 cut(s) 1051, 1200
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 4 cut(s) 402, 490, 1034, 1088
BsiSI CCGG 8 cut(s) 107, 254, 435, 447, 519, 528, 537, 861
BslFI GGGAC 3 cut(s) 155, 685, 886
BslI CCNNNNNNNGG 4 cut(s) 329, 412, 963, 1210
BsmFI GGGAC 3 cut(s) 155, 685, 886
BsmI GAATGC 2 cut(s) 941, 1177
BsnI GGCC 7 cut(s) 201, 450, 510, 536, 664, 1045, 1109
Bsp1286I GDGCHC 6 cut(s) 28, 402, 490, 1034, 1088, 1203
Bsp143I GATC 3 cut(s) 879, 1059, 1191
BspANI GGCC 7 cut(s) 201, 450, 510, 536, 664, 1045, 1109
BspFNI CGCG 2 cut(s) 959, 1036
BspLI GGNNCC 7 cut(s) 292, 874, 993, 1044, 1053, 1108, 1202
BspMAI CTGCAG 1 cut(s) 1077
BspT107I GGYRCC 2 cut(s) 1051, 1200
BsrBI CCGCTC 1 cut(s) 267
BsrFI RCCGGY 1 cut(s) 536
BsrI ACTGG 5 cut(s) 202, 424, 697, 1097, 1204
BssAI RCCGGY 1 cut(s) 536
BssMI GATC 3 cut(s) 879, 1059, 1191
BssNI GRCGYC 3 cut(s) 354, 494, 765
BssT1I CCWWGG 1 cut(s) 1147
Bst2UI CCWGG 5 cut(s) 330, 681, 758, 1040, 1067
Bst4CI ACNGT 5 cut(s) 311, 373, 463, 889, 904
Bst6I CTCTTC 4 cut(s) 35, 482, 571, 725
BstACI GRCGYC 3 cut(s) 354, 494, 765
BstBAI YACGTR 4 cut(s) 235, 246, 1089, 1126
BstC8I GCNNGC 5 cut(s) 224, 295, 402, 1034, 1199
BstDSI CCRYGG 2 cut(s) 387, 957
BstF5I GGATG 1 cut(s) 317
BstFNI CGCG 2 cut(s) 959, 1036
BstHHI GCGC 1 cut(s) 1038
BstKTI GATC 3 cut(s) 882, 1062, 1194
BstMBI GATC 3 cut(s) 879, 1059, 1191
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 3 cut(s) 68, 989, 1042
BstNI CCWGG 5 cut(s) 330, 681, 758, 1040, 1067
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 8 cut(s) 252, 328, 434, 445, 679, 756, 1038, 1065
BstSFI CTRYAG 1 cut(s) 1073
BstSLI GKGCMC 3 cut(s) 28, 490, 1203
BstSNI TACGTA 1 cut(s) 1126
BstUI CGCG 2 cut(s) 959, 1036
BstV1I GCAGC 5 cut(s) 320, 502, 970, 1059, 1250
BstXI CCANNNNNNTGG 1 cut(s) 1117
BsuRI GGCC 7 cut(s) 201, 450, 510, 536, 664, 1045, 1109
BtgI CCRYGG 2 cut(s) 387, 957
BtgZI GCGATG 1 cut(s) 1190
BtrI CACGTC 1 cut(s) 412
BtsCI GGATG 1 cut(s) 317
BtsIMutI CAGTG 1 cut(s) 900
Cac8I GCNNGC 5 cut(s) 224, 295, 402, 1034, 1199
CaiI CAGNNNCTG 1 cut(s) 300
CfoI GCGC 1 cut(s) 1038
Cfr10I RCCGGY 1 cut(s) 536
Cfr13I GGNCC 4 cut(s) 662, 873, 1043, 1107
Cfr42I CCGCGG 1 cut(s) 960
CseI GACGC 3 cut(s) 128, 343, 773
CsiI ACCWGGT 1 cut(s) 1065
Csp6I GTAC 5 cut(s) 247, 667, 1052, 1090, 1123
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 2 cut(s) 348, 532
CviQI GTAC 5 cut(s) 247, 667, 1052, 1090, 1123
DpnI GATC 3 cut(s) 881, 1061, 1193
DpnII GATC 3 cut(s) 879, 1059, 1191
DrdI GACNNNNNNGTC 2 cut(s) 371, 818
DseDI GACNNNNNNGTC 2 cut(s) 371, 818
EaeI YGGCCR 3 cut(s) 199, 448, 534
Eam1104I CTCTTC 4 cut(s) 35, 482, 571, 725
EarI CTCTTC 4 cut(s) 35, 482, 571, 725
EciI GGCGGA 2 cut(s) 259, 1179
Ecl136II GAGCTC 1 cut(s) 400
Eco105I TACGTA 1 cut(s) 1126
Eco130I CCWWGG 1 cut(s) 1147
Eco24I GRGCYC 1 cut(s) 402
Eco47I GGWCC 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 1 cut(s) 957
EcoICRI GAGCTC 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 793
EcoRII CCWGG 5 cut(s) 328, 679, 756, 1038, 1065
EcoT14I CCWWGG 1 cut(s) 1147
EcoT38I GRGCYC 1 cut(s) 402
ErhI CCWWGG 1 cut(s) 1147
FaeI CATG 2 cut(s) 351, 535
FaiI YATR 3 cut(s) 349, 533, 709
FaqI GGGAC 3 cut(s) 155, 685, 886
FatI CATG 2 cut(s) 347, 531
FauI CCCGC 2 cut(s) 863, 1190
FblI GTMKAC 1 cut(s) 216
FokI GGATG 1 cut(s) 304
FriOI GRGCYC 1 cut(s) 402
FspBI CTAG 6 cut(s) 542, 908, 963, 975, 1148, 1318
GlaI GCGC 1 cut(s) 1037
GsuI CTGGAG 1 cut(s) 1114
HaeIII GGCC 7 cut(s) 201, 450, 510, 536, 664, 1045, 1109
HapII CCGG 8 cut(s) 107, 254, 435, 447, 519, 528, 537, 861
HgaI GACGC 3 cut(s) 128, 343, 773
HhaI GCGC 1 cut(s) 1038
Hin1I GRCGYC 3 cut(s) 354, 494, 765
Hin1II CATG 2 cut(s) 351, 535
Hin6I GCGC 1 cut(s) 1036
HinP1I GCGC 1 cut(s) 1036
HincII GTYRAC 2 cut(s) 429, 808
HindII GTYRAC 2 cut(s) 429, 808
HindIII AAGCTT 1 cut(s) 912
HinfI GANTC 4 cut(s) 642, 684, 892, 953
HpaII CCGG 8 cut(s) 107, 254, 435, 447, 519, 528, 537, 861
HphI GGTGA 5 cut(s) 317, 407, 668, 901, 1297
Hpy166II GTNNAC 6 cut(s) 217, 429, 488, 808, 1123, 1159
Hpy188I TCNGA 1 cut(s) 775
Hpy188III TCNNGA 2 cut(s) 908, 975
Hpy8I GTNNAC 6 cut(s) 217, 429, 488, 808, 1123, 1159
Hpy99I CGWCG 9 cut(s) 104, 496, 499, 692, 767, 824, 1051, 1136, 1139
HpyAV CCTTC 3 cut(s) 91, 540, 1006
HpyCH4III ACNGT 5 cut(s) 311, 373, 463, 889, 904
HpyCH4V TGCA 4 cut(s) 336, 488, 1075, 1225
HpyF10VI GCNNNNNNNGC 3 cut(s) 68, 989, 1042
Hsp92I GRCGYC 3 cut(s) 354, 494, 765
Hsp92II CATG 2 cut(s) 351, 535
HspAI GCGC 1 cut(s) 1036
KpnI GGTACC 1 cut(s) 1055
KspI CCGCGG 1 cut(s) 960
Kzo9I GATC 3 cut(s) 879, 1059, 1191
LmnI GCTCC 3 cut(s) 272, 290, 997
Lsp1109I GCAGC 5 cut(s) 320, 502, 970, 1059, 1250
MabI ACCWGGT 1 cut(s) 1065
MaeI CTAG 6 cut(s) 542, 908, 963, 975, 1148, 1318
MaeIII GTNAC 8 cut(s) 109, 305, 355, 373, 457, 656, 931, 946
MalI GATC 3 cut(s) 881, 1061, 1193
MbiI CCGCTC 1 cut(s) 267
MboI GATC 3 cut(s) 879, 1059, 1191
MboII GAAGA 6 cut(s) 22, 43, 469, 558, 643, 712
MhlI GDGCHC 6 cut(s) 28, 402, 490, 1034, 1088, 1203
MluCI AATT 3 cut(s) 17, 572, 793
MlyI GAGTC 2 cut(s) 651, 962
MmeI TCCRAC 2 cut(s) 1188, 1317
MseI TTAA 3 cut(s) 47, 503, 828
MslI CAYNNNNRTG 1 cut(s) 788
MspA1I CMGCKG 2 cut(s) 297, 959
MspI CCGG 8 cut(s) 107, 254, 435, 447, 519, 528, 537, 861
MspR9I CCNGG 8 cut(s) 254, 330, 436, 447, 681, 758, 1040, 1067
Mva1269I GAATGC 2 cut(s) 941, 1177
MvaI CCWGG 5 cut(s) 330, 681, 758, 1040, 1067
MvnI CGCG 2 cut(s) 959, 1036
MwoI GCNNNNNNNGC 3 cut(s) 68, 989, 1042
NciI CCSGG 3 cut(s) 254, 436, 447
NdeII GATC 3 cut(s) 879, 1059, 1191
NlaIII CATG 2 cut(s) 351, 535
NlaIV GGNNCC 7 cut(s) 292, 874, 993, 1044, 1053, 1108, 1202
NmeAIII GCCGAG 2 cut(s) 174, 725
NmuCI GTSAC 5 cut(s) 109, 305, 355, 373, 656
NspI RCATGY 1 cut(s) 351
PasI CCCWGGG 1 cut(s) 757
PcsI WCGNNNNNNNCGW 3 cut(s) 408, 816, 1131
PctI GAATGC 2 cut(s) 941, 1177
PfeI GAWTC 2 cut(s) 684, 892
PflFI GACNNNGTC 1 cut(s) 436
PflMI CCANNNNNTGG 1 cut(s) 412
PleI GAGTC 2 cut(s) 650, 961
PpsI GAGTC 2 cut(s) 650, 961
Ppu21I YACGTR 4 cut(s) 235, 246, 1089, 1126
Psp124BI GAGCTC 1 cut(s) 402
Psp1406I AACGTT 1 cut(s) 456
Psp6I CCWGG 5 cut(s) 328, 679, 756, 1038, 1065
PspGI CCWGG 5 cut(s) 328, 679, 756, 1038, 1065
PspN4I GGNNCC 7 cut(s) 292, 874, 993, 1044, 1053, 1108, 1202
PspPI GGNCC 4 cut(s) 662, 873, 1043, 1107
PstI CTGCAG 1 cut(s) 1077
PstNI CAGNNNCTG 1 cut(s) 300
PsyI GACNNNGTC 1 cut(s) 436
RsaI GTAC 5 cut(s) 248, 668, 1053, 1091, 1124
RsaNI GTAC 5 cut(s) 247, 667, 1052, 1090, 1123
RseI CAYNNNNRTG 1 cut(s) 788
SacI GAGCTC 1 cut(s) 402
SacII CCGCGG 1 cut(s) 960
SaqAI TTAA 3 cut(s) 47, 503, 828
Sau3AI GATC 3 cut(s) 879, 1059, 1191
Sau96I GGNCC 4 cut(s) 662, 873, 1043, 1107
SchI GAGTC 2 cut(s) 651, 962
ScrFI CCNGG 8 cut(s) 254, 330, 436, 447, 681, 758, 1040, 1067
SduI GDGCHC 6 cut(s) 28, 402, 490, 1034, 1088, 1203
SexAI ACCWGGT 1 cut(s) 1065
SfcI CTRYAG 1 cut(s) 1073
Sfr303I CCGCGG 1 cut(s) 960
SgrBI CCGCGG 1 cut(s) 960
SinI GGWCC 1 cut(s) 873
SmiMI CAYNNNNRTG 1 cut(s) 788
SnaBI TACGTA 1 cut(s) 1126
Sse9I AATT 3 cut(s) 17, 572, 793
SspMI CTAG 6 cut(s) 542, 908, 963, 975, 1148, 1318
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 8 cut(s) 252, 328, 434, 445, 679, 756, 1038, 1065
StyI CCWWGG 1 cut(s) 1147
TaaI ACNGT 5 cut(s) 311, 373, 463, 889, 904
TaqI TCGA 8 cut(s) 189, 687, 822, 999, 1062, 1184, 1244, 1262
TasI AATT 3 cut(s) 17, 572, 793
TauI GCSGC 6 cut(s) 201, 267, 300, 354, 510, 962
TfiI GAWTC 2 cut(s) 684, 892
Tru1I TTAA 3 cut(s) 47, 503, 828
Tru9I TTAA 3 cut(s) 47, 503, 828
TscAI CASTG 1 cut(s) 907
TseFI GTSAC 5 cut(s) 109, 305, 355, 373, 656
TseI GCWGC 5 cut(s) 333, 515, 983, 1072, 1238
Tsp45I GTSAC 5 cut(s) 109, 305, 355, 373, 656
TspDTI ATGAA 2 cut(s) 712, 772
TspGWI ACGGA 2 cut(s) 1031, 1300
TspRI CASTG 1 cut(s) 907
Tth111I GACNNNGTC 1 cut(s) 436
Van91I CCANNNNNTGG 1 cut(s) 412
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 873
XapI RAATTY 1 cut(s) 793
XbaI TCTAGA 2 cut(s) 907, 974
XceI RCATGY 1 cut(s) 351
XmaJI CCTAGG 1 cut(s) 1147
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 6 cut(s) 542, 908, 963, 975, 1148, 1318
ZraI GACGTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.