Rh6BG337500

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000716
Physical Location & Seq
Reverse (-)
57041086 .. 57042404
1319 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG337500.1

Sequence Viewer

Length: 1248 bp
ATGGCTTCCTCTGTTCAATTTTGTGCCCTCTTCTCAACCCTACTCTTAATCTTCACATCTGCCACCTTTGCTCAACAATCCTTCAGACCCAAAGCCCTCGTCGTTCCGGTCACAAAAGACGCTTCTACCCTCCAATACACCACTCGTATTGCTCAACGAACCCCTCTCGTCCCCATCAGCCTTGTCCTCGACCTCGGCGGCCAGTTCCTCTGGGTAGACTGCGAGCAAAACTACGTGTCCTCCACGTACCGCCCGGCACGTTGCCGCTCCGCCCAATGCTCACTCGCAGGAGCCAGCGGCTGTGGCGACTGTTTCTCATCCCCCAAACCTGGCTGCAACAACAACACATGCGGCGTCACACCTGACAACACCGTCACACGCACCGCCACCGGCGGTGAGCTCGCCCAAGACGTTGTTTCTGTCCAGTCAACGACCGGGTCAAACCCCGGCCAAAACGTTACCGTTTCAAACTTCCTCTTCGCTTGTGCACCGACGTCGCTTTTAAGCGGCCTCGCTGCCGGAGTTTCCGGCATGGCCGGTCTAGGAAGGACTAAAATAGCCCTCTCTTCGCAATTTGCTTCGGCTTTCAGCTTCAAAAGAAAGTTCGCCGTCTGCTTATCCTCCTCCACCTCCGCAAATGGAGTCGCTTTCTTCGGTGACGGGCCCACCGCCTCGGCTTTCTCCCAGGGCGACGCCTCCTCGGAATACTTCATCGGCGTGAATTCAATCAAAGTCAACGACAAAGCCGTCGATATTAACACCACCTTGCTCTCCATCAACAACTCCTCCGGCGTGGGCGGGACCAAGATCAGCACGGTGAATCCCTACACTGTTCTAGAAGCTTCCATTTTCAAAGCCGTAACTGAAGCATTCGTAACCGAGTCCGCGGCTAGGAATATCTCTAGAGTAGCTGCTGTGGCTCCCTTCGAGGTGTGTTTCAGCACGGAGAACGTGTTGAGCACGCGCCTGGGGCCGTCGGTACCAGAGATCGACCTGGTGCTGCAGAATGAGAGCACGTACTGGAGAATGTTCGGGGCCAACTCAATGGTGTACGTAAGCGACGACGTTTTGTGCCTAGGGTTTGTGAACGGCGGAGAGAATGCGATGACTTCGATTGTGATCGGCGGGCACCAGTTGGAGGACAATCTTGTGCAGTTTGATTTGGCAGCTTCGAGGGTTGGGTTCAGCTCGACTTTGTTGGGGAGGCAAACTACTTGTTCCAACTTCAACTTCACCTCCGTTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

415

Amino Acids

43.46

Weight (kDa)

5.56

Isoelectric Point (pI)

29.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 46 - 220 4.7e-48 Xylanase inhibitor N-terminal
TAXi_C PF14541 235 - 396 3.7e-60 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 371, 746
AatII GACGTC 1 cut(s) 497
Acc65I GGTACC 1 cut(s) 979
AccB1I GGYRCC 2 cut(s) 979, 1128
AccBSI CCGCTC 1 cut(s) 267
AccI GTMKAC 1 cut(s) 216
AccII CGCG 2 cut(s) 887, 964
AclI AACGTT 1 cut(s) 456
AcoI YGGCCR 3 cut(s) 199, 448, 534
AcsI RAATTY 1 cut(s) 721
AcuI CTGAAG 2 cut(s) 67, 885
AcyI GRCGYC 3 cut(s) 354, 494, 693
AfaI GTAC 4 cut(s) 248, 981, 1019, 1052
AfiI CCNNNNNNNGG 3 cut(s) 329, 891, 1138
AflIII ACRYGT 2 cut(s) 234, 951
AgsI TTSAA 6 cut(s) 17, 468, 595, 726, 853, 1228
AjnI CCWGG 4 cut(s) 328, 684, 966, 993
AjuI GAANNNNNNNTTGG 2 cut(s) 1214, 1246
AluBI AGCT 6 cut(s) 400, 591, 842, 911, 1169, 1188
AluI AGCT 6 cut(s) 400, 591, 842, 911, 1169, 1188
Alw21I GWGCWC 4 cut(s) 402, 490, 962, 1016
Alw44I GTGCAC 1 cut(s) 486
AlwNI CAGNNNCTG 1 cut(s) 300
AoxI GGCC 7 cut(s) 199, 448, 508, 534, 662, 971, 1035
ApaI GGGCCC 1 cut(s) 666
ApaLI GTGCAC 1 cut(s) 486
ApeKI GCWGC 5 cut(s) 333, 515, 911, 1000, 1166
ApoI RAATTY 1 cut(s) 721
ArsI GACNNNNNNTTYG 2 cut(s) 84, 116
Asp718I GGTACC 1 cut(s) 979
AspA2I CCTAGG 1 cut(s) 1075
AspLEI GCGC 1 cut(s) 966
AspS9I GGNCC 5 cut(s) 662, 663, 801, 971, 1035
AsuC2I CCSGG 3 cut(s) 254, 436, 447
AsuHPI GGTGA 4 cut(s) 407, 668, 829, 1225
AvaII GGWCC 1 cut(s) 801
AvrII CCTAGG 1 cut(s) 1075
BaeGI GKGCMC 4 cut(s) 28, 490, 666, 1131
BanI GGYRCC 2 cut(s) 979, 1128
BanII GRGCYC 2 cut(s) 402, 666
Bbv12I GWGCWC 4 cut(s) 402, 490, 962, 1016
BbvI GCAGC 5 cut(s) 320, 502, 898, 987, 1178
BccI CCATC 2 cut(s) 182, 782
BceAI ACGGC 5 cut(s) 593, 731, 842, 958, 1105
BcgI CGANNNNNNTGC 2 cut(s) 477, 511
BciT130I CCWGG 4 cut(s) 330, 686, 968, 995
BcnI CCSGG 3 cut(s) 254, 436, 447
BfaI CTAG 6 cut(s) 542, 836, 891, 903, 1076, 1246
BfmI CTRYAG 1 cut(s) 1001
BlnI CCTAGG 1 cut(s) 1075
Bme1390I CCNGG 7 cut(s) 254, 330, 436, 447, 686, 968, 995
Bme18I GGWCC 1 cut(s) 801
BmgT120I GGNCC 5 cut(s) 662, 663, 801, 971, 1035
BmiI GGNNCC 8 cut(s) 292, 664, 802, 921, 972, 981, 1036, 1130
BmrFI CCNGG 7 cut(s) 254, 330, 436, 447, 686, 968, 995
BpmI CTGGAG 1 cut(s) 1042
BpuMI CCSGG 3 cut(s) 254, 436, 447
BsaAI YACGTR 4 cut(s) 235, 246, 1017, 1054
BsaBI GATNNNNATC 1 cut(s) 1118
BsaHI GRCGYC 3 cut(s) 354, 494, 693
BsaJI CCNNGG 9 cut(s) 193, 445, 672, 684, 685, 699, 885, 967, 1075
BsaWI WCCGGW 1 cut(s) 106
BsaXI ACNNNNNCTCC 7 cut(s) 224, 254, 770, 800, 938, 968, 1220
Bsc4I CCNNNNNNNGG 3 cut(s) 329, 891, 1138
Bse118I RCCGGY 2 cut(s) 389, 536
Bse1I ACTGG 4 cut(s) 202, 424, 1025, 1132
Bse8I GATNNNNATC 1 cut(s) 1118
BseBI CCWGG 4 cut(s) 330, 686, 968, 995
BseDI CCNNGG 9 cut(s) 193, 445, 672, 684, 685, 699, 885, 967, 1075
BseGI GGATG 1 cut(s) 317
BseJI GATNNNNATC 1 cut(s) 1118
BseLI CCNNNNNNNGG 3 cut(s) 329, 891, 1138
BseNI ACTGG 4 cut(s) 202, 424, 1025, 1132
BseRI GAGGAG 3 cut(s) 613, 688, 775
BseSI GKGCMC 4 cut(s) 28, 490, 666, 1131
BseXI GCAGC 5 cut(s) 320, 502, 898, 987, 1178
BsgI GTGCAG 1 cut(s) 1172
Bsh1236I CGCG 2 cut(s) 887, 964
Bsh1285I CGRYCG 1 cut(s) 435
BshFI GGCC 7 cut(s) 201, 450, 510, 536, 664, 973, 1037
BshNI GGYRCC 2 cut(s) 979, 1128
BsiEI CGRYCG 1 cut(s) 435
BsiHKAI GWGCWC 4 cut(s) 402, 490, 962, 1016
BsiSI CCGG 9 cut(s) 107, 254, 390, 435, 447, 519, 528, 537, 789
BslFI GGGAC 2 cut(s) 155, 814
BslI CCNNNNNNNGG 3 cut(s) 329, 891, 1138
BsmFI GGGAC 2 cut(s) 155, 814
BsmI GAATGC 2 cut(s) 869, 1105
BsnI GGCC 7 cut(s) 201, 450, 510, 536, 664, 973, 1037
Bsp120I GGGCCC 1 cut(s) 662
Bsp1286I GDGCHC 7 cut(s) 28, 402, 490, 666, 962, 1016, 1131
Bsp143I GATC 3 cut(s) 807, 987, 1119
BspANI GGCC 7 cut(s) 201, 450, 510, 536, 664, 973, 1037
BspFNI CGCG 2 cut(s) 887, 964
BspLI GGNNCC 8 cut(s) 292, 664, 802, 921, 972, 981, 1036, 1130
BspMAI CTGCAG 1 cut(s) 1005
BspT107I GGYRCC 2 cut(s) 979, 1128
BsrBI CCGCTC 1 cut(s) 267
BsrFI RCCGGY 2 cut(s) 389, 536
BsrI ACTGG 4 cut(s) 202, 424, 1025, 1132
BssAI RCCGGY 2 cut(s) 389, 536
BssECI CCNNGG 9 cut(s) 193, 445, 672, 684, 685, 699, 885, 967, 1075
BssMI GATC 3 cut(s) 807, 987, 1119
BssNI GRCGYC 3 cut(s) 354, 494, 693
BssT1I CCWWGG 1 cut(s) 1075
Bst2UI CCWGG 4 cut(s) 330, 686, 968, 995
Bst4CI ACNGT 5 cut(s) 311, 373, 463, 817, 832
Bst6I CTCTTC 3 cut(s) 35, 482, 571
BstACI GRCGYC 3 cut(s) 354, 494, 693
BstBAI YACGTR 4 cut(s) 235, 246, 1017, 1054
BstC8I GCNNGC 5 cut(s) 224, 295, 402, 962, 1127
BstDSI CCRYGG 1 cut(s) 885
BstF5I GGATG 1 cut(s) 317
BstFNI CGCG 2 cut(s) 887, 964
BstHHI GCGC 1 cut(s) 966
BstKTI GATC 3 cut(s) 810, 990, 1122
BstMBI GATC 3 cut(s) 807, 987, 1119
BstMCI CGRYCG 1 cut(s) 435
BstMWI GCNNNNNNNGC 4 cut(s) 68, 303, 917, 970
BstNI CCWGG 4 cut(s) 330, 686, 968, 995
BstNSI RCATGY 1 cut(s) 351
BstSCI CCNGG 7 cut(s) 252, 328, 434, 445, 684, 966, 993
BstSFI CTRYAG 1 cut(s) 1001
BstSLI GKGCMC 4 cut(s) 28, 490, 666, 1131
BstSNI TACGTA 1 cut(s) 1054
BstUI CGCG 2 cut(s) 887, 964
BstV1I GCAGC 5 cut(s) 320, 502, 898, 987, 1178
BstXI CCANNNNNNTGG 1 cut(s) 1045
BsuRI GGCC 7 cut(s) 201, 450, 510, 536, 664, 973, 1037
BtgI CCRYGG 1 cut(s) 885
BtgZI GCGATG 1 cut(s) 1118
BtsCI GGATG 1 cut(s) 317
BtsIMutI CAGTG 1 cut(s) 828
Cac8I GCNNGC 5 cut(s) 224, 295, 402, 962, 1127
CaiI CAGNNNCTG 1 cut(s) 300
CfoI GCGC 1 cut(s) 966
Cfr10I RCCGGY 2 cut(s) 389, 536
Cfr13I GGNCC 5 cut(s) 662, 663, 801, 971, 1035
Cfr42I CCGCGG 1 cut(s) 888
CseI GACGC 3 cut(s) 128, 343, 701
CsiI ACCWGGT 1 cut(s) 993
Csp6I GTAC 4 cut(s) 247, 980, 1018, 1051
CspCI CAANNNNNGTGG 2 cut(s) 130, 165
CviAII CATG 2 cut(s) 348, 532
CviQI GTAC 4 cut(s) 247, 980, 1018, 1051
DpnI GATC 3 cut(s) 809, 989, 1121
DpnII GATC 3 cut(s) 807, 987, 1119
DrdI GACNNNNNNGTC 2 cut(s) 371, 746
DseDI GACNNNNNNGTC 2 cut(s) 371, 746
EaeI YGGCCR 3 cut(s) 199, 448, 534
Eam1104I CTCTTC 3 cut(s) 35, 482, 571
EarI CTCTTC 3 cut(s) 35, 482, 571
EciI GGCGGA 2 cut(s) 259, 1107
Ecl136II GAGCTC 1 cut(s) 400
Eco105I TACGTA 1 cut(s) 1054
Eco130I CCWWGG 1 cut(s) 1075
Eco24I GRGCYC 2 cut(s) 402, 666
Eco47I GGWCC 1 cut(s) 801
Eco53kI GAGCTC 1 cut(s) 400
Eco57I CTGAAG 2 cut(s) 67, 885
EcoICRI GAGCTC 1 cut(s) 400
EcoRI GAATTC 1 cut(s) 721
EcoRII CCWGG 4 cut(s) 328, 684, 966, 993
EcoT14I CCWWGG 1 cut(s) 1075
EcoT38I GRGCYC 2 cut(s) 402, 666
ErhI CCWWGG 1 cut(s) 1075
FaeI CATG 2 cut(s) 351, 535
FaiI YATR 2 cut(s) 349, 533
FaqI GGGAC 2 cut(s) 155, 814
FatI CATG 2 cut(s) 347, 531
FauI CCCGC 2 cut(s) 791, 1118
FblI GTMKAC 1 cut(s) 216
FokI GGATG 1 cut(s) 304
FriOI GRGCYC 2 cut(s) 402, 666
FspBI CTAG 6 cut(s) 542, 836, 891, 903, 1076, 1246
GlaI GCGC 1 cut(s) 965
GsuI CTGGAG 1 cut(s) 1042
HaeIII GGCC 7 cut(s) 201, 450, 510, 536, 664, 973, 1037
HapII CCGG 9 cut(s) 107, 254, 390, 435, 447, 519, 528, 537, 789
HgaI GACGC 3 cut(s) 128, 343, 701
HhaI GCGC 1 cut(s) 966
Hin1I GRCGYC 3 cut(s) 354, 494, 693
Hin1II CATG 2 cut(s) 351, 535
Hin6I GCGC 1 cut(s) 964
HinP1I GCGC 1 cut(s) 964
HincII GTYRAC 2 cut(s) 429, 736
HindII GTYRAC 2 cut(s) 429, 736
HindIII AAGCTT 1 cut(s) 840
HinfI GANTC 3 cut(s) 642, 820, 881
HpaII CCGG 9 cut(s) 107, 254, 390, 435, 447, 519, 528, 537, 789
HphI GGTGA 4 cut(s) 407, 668, 829, 1225
Hpy166II GTNNAC 6 cut(s) 217, 429, 488, 736, 1051, 1087
Hpy188I TCNGA 2 cut(s) 86, 703
Hpy188III TCNNGA 2 cut(s) 836, 903
Hpy8I GTNNAC 6 cut(s) 217, 429, 488, 736, 1051, 1087
Hpy99I CGWCG 8 cut(s) 104, 496, 499, 695, 752, 979, 1064, 1067
HpyAV CCTTC 3 cut(s) 91, 540, 934
HpyCH4III ACNGT 5 cut(s) 311, 373, 463, 817, 832
HpyCH4V TGCA 4 cut(s) 336, 488, 1003, 1153
HpyF10VI GCNNNNNNNGC 4 cut(s) 68, 303, 917, 970
Hsp92I GRCGYC 3 cut(s) 354, 494, 693
Hsp92II CATG 2 cut(s) 351, 535
HspAI GCGC 1 cut(s) 964
KpnI GGTACC 1 cut(s) 983
KspI CCGCGG 1 cut(s) 888
Kzo9I GATC 3 cut(s) 807, 987, 1119
LmnI GCTCC 3 cut(s) 272, 290, 925
Lsp1109I GCAGC 5 cut(s) 320, 502, 898, 987, 1178
MabI ACCWGGT 1 cut(s) 993
MaeI CTAG 6 cut(s) 542, 836, 891, 903, 1076, 1246
MaeIII GTNAC 7 cut(s) 109, 355, 373, 457, 656, 859, 874
MalI GATC 3 cut(s) 809, 989, 1121
MbiI CCGCTC 1 cut(s) 267
MboI GATC 3 cut(s) 807, 987, 1119
MboII GAAGA 5 cut(s) 22, 43, 469, 558, 643
MhlI GDGCHC 7 cut(s) 28, 402, 490, 666, 962, 1016, 1131
MluCI AATT 3 cut(s) 17, 572, 721
MlyI GAGTC 2 cut(s) 651, 890
MmeI TCCRAC 2 cut(s) 1116, 1245
MseI TTAA 3 cut(s) 47, 503, 756
MslI CAYNNNNRTG 1 cut(s) 716
MspA1I CMGCKG 2 cut(s) 297, 887
MspI CCGG 9 cut(s) 107, 254, 390, 435, 447, 519, 528, 537, 789
MspR9I CCNGG 7 cut(s) 254, 330, 436, 447, 686, 968, 995
Mva1269I GAATGC 2 cut(s) 869, 1105
MvaI CCWGG 4 cut(s) 330, 686, 968, 995
MvnI CGCG 2 cut(s) 887, 964
MwoI GCNNNNNNNGC 4 cut(s) 68, 303, 917, 970
NciI CCSGG 3 cut(s) 254, 436, 447
NdeII GATC 3 cut(s) 807, 987, 1119
NlaIII CATG 2 cut(s) 351, 535
NlaIV GGNNCC 8 cut(s) 292, 664, 802, 921, 972, 981, 1036, 1130
NmeAIII GCCGAG 2 cut(s) 174, 653
NmuCI GTSAC 4 cut(s) 109, 355, 373, 656
NspI RCATGY 1 cut(s) 351
PasI CCCWGGG 1 cut(s) 685
PcsI WCGNNNNNNNCGW 3 cut(s) 408, 744, 1059
PctI GAATGC 2 cut(s) 869, 1105
PfeI GAWTC 1 cut(s) 820
PflFI GACNNNGTC 1 cut(s) 436
PleI GAGTC 2 cut(s) 650, 889
PpsI GAGTC 2 cut(s) 650, 889
Ppu21I YACGTR 4 cut(s) 235, 246, 1017, 1054
Psp124BI GAGCTC 1 cut(s) 402
Psp1406I AACGTT 1 cut(s) 456
Psp6I CCWGG 4 cut(s) 328, 684, 966, 993
PspGI CCWGG 4 cut(s) 328, 684, 966, 993
PspN4I GGNNCC 8 cut(s) 292, 664, 802, 921, 972, 981, 1036, 1130
PspOMI GGGCCC 1 cut(s) 662
PspPI GGNCC 5 cut(s) 662, 663, 801, 971, 1035
PstI CTGCAG 1 cut(s) 1005
PstNI CAGNNNCTG 1 cut(s) 300
PsyI GACNNNGTC 1 cut(s) 436
RsaI GTAC 4 cut(s) 248, 981, 1019, 1052
RsaNI GTAC 4 cut(s) 247, 980, 1018, 1051
RseI CAYNNNNRTG 1 cut(s) 716
SacI GAGCTC 1 cut(s) 402
SacII CCGCGG 1 cut(s) 888
SaqAI TTAA 3 cut(s) 47, 503, 756
Sau3AI GATC 3 cut(s) 807, 987, 1119
Sau96I GGNCC 5 cut(s) 662, 663, 801, 971, 1035
SchI GAGTC 2 cut(s) 651, 890
ScrFI CCNGG 7 cut(s) 254, 330, 436, 447, 686, 968, 995
SduI GDGCHC 7 cut(s) 28, 402, 490, 666, 962, 1016, 1131
SexAI ACCWGGT 1 cut(s) 993
SfcI CTRYAG 1 cut(s) 1001
Sfr303I CCGCGG 1 cut(s) 888
SgrAI CRCCGGYG 1 cut(s) 389
SgrBI CCGCGG 1 cut(s) 888
SinI GGWCC 1 cut(s) 801
SmiMI CAYNNNNRTG 1 cut(s) 716
SnaBI TACGTA 1 cut(s) 1054
Sse9I AATT 3 cut(s) 17, 572, 721
SspMI CTAG 6 cut(s) 542, 836, 891, 903, 1076, 1246
SstI GAGCTC 1 cut(s) 402
StyD4I CCNGG 7 cut(s) 252, 328, 434, 445, 684, 966, 993
StyI CCWWGG 1 cut(s) 1075
TaaI ACNGT 5 cut(s) 311, 373, 463, 817, 832
TaqI TCGA 7 cut(s) 189, 750, 927, 990, 1112, 1172, 1190
TasI AATT 3 cut(s) 17, 572, 721
TauI GCSGC 6 cut(s) 201, 267, 300, 354, 510, 890
TfiI GAWTC 1 cut(s) 820
Tru1I TTAA 3 cut(s) 47, 503, 756
Tru9I TTAA 3 cut(s) 47, 503, 756
TscAI CASTG 1 cut(s) 835
TseFI GTSAC 4 cut(s) 109, 355, 373, 656
TseI GCWGC 5 cut(s) 333, 515, 911, 1000, 1166
Tsp45I GTSAC 4 cut(s) 109, 355, 373, 656
TspDTI ATGAA 1 cut(s) 700
TspGWI ACGGA 2 cut(s) 959, 1228
TspRI CASTG 1 cut(s) 835
Tth111I GACNNNGTC 1 cut(s) 436
VneI GTGCAC 1 cut(s) 486
VpaK11BI GGWCC 1 cut(s) 801
XapI RAATTY 1 cut(s) 721
XbaI TCTAGA 2 cut(s) 835, 902
XceI RCATGY 1 cut(s) 351
XmaJI CCTAGG 1 cut(s) 1075
XmiI GTMKAC 1 cut(s) 216
XspI CTAG 6 cut(s) 542, 836, 891, 903, 1076, 1246
ZraI GACGTC 1 cut(s) 495
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.