RchiOBHm_Chr4g0417981

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0000716
Physical Location & Seq
Forward (+)
43288824 .. 43289587
764 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ38801

Sequence Viewer

Length: 699 bp
ATGGCTGGCCTTGGCAGATTTAAAGTCGGACTTCCTACCCAGTTTGCTTACGCTTTTAGCTTCAATAGGAAATTCGCCATTTGCTTGACCTCTGCAGCAAAATCGAATGGTGTCATATTTTTTGGTGACAGTCCTTATGTTTTCCTTCCCGGCATTGATGTCTCCAAGTCGCTTAAGTACACCAAATTGATCCTCAACCCGGTTAGCACGGCTGCTATTTATTTCGAAGGCGATGCTTCATCAGACTACTTTATCGAAGTAAAGTCCATCAAGGTCAATGAAAAGGTCGTTCCGATAAATACTAATTTGCTAGCCATCGACCAAGACGGGAATGGCGGGACAAGTATTAGCACATTGAAGCCTTACACGGTTTTGGAGACGTCAATCTACAAGGCTGTCGTCAATGCGTTTATCGGCAGCACACGTGTCGGCCCAGGTGTGCCTGCAATTGACCTTGTATTGAGCAAGGGAGTGTACTGGAGGGTATTTGGTGCAAACTCCATGGTGCAAGTGAGCAAGGACGTGTTGTGTTTAGGGTTTGTGAATGGCGGTGTGAGGCCAAGGACTTCTATTGTGATTGGAGGGAATCAAATCGAGGACAATCTTCTTCAGTTTGATTTGGCTAACAAGAGGCTCGGGTTCAGCTCCTCCTTGTTGTTCCAACAGACAACCTGTGCCAACTTCAACTTCACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

232

Amino Acids

25.03

Weight (kDa)

9.22

Isoelectric Point (pI)

22.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 1 - 43 3.6e-10 Xylanase inhibitor N-terminal
TAXi_C PF14541 82 - 137 1.4e-17 Xylanase inhibitor C-terminal
TAXi_C PF14541 138 - 215 9e-28 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 383
AciI CCGC 2 cut(s) 336, 549
AclWI GGATC 1 cut(s) 184
AcsI RAATTY 1 cut(s) 71
AcuI CTGAAG 1 cut(s) 593
AcvI CACGTG 1 cut(s) 425
AcyI GRCGYC 1 cut(s) 380
AfaI GTAC 2 cut(s) 179, 476
AfiI CCNNNNNNNGG 1 cut(s) 199
AflII CTTAAG 1 cut(s) 173
AflIII ACRYGT 3 cut(s) 422, 424, 522
AgsI TTSAA 3 cut(s) 64, 358, 685
AjiI CACGTC 1 cut(s) 523
AjnI CCWGG 1 cut(s) 433
AjuI GAANNNNNNNTTGG 1 cut(s) 671
AluBI AGCT 2 cut(s) 60, 645
AluI AGCT 2 cut(s) 60, 645
Alw26I GTCTC 2 cut(s) 166, 371
AlwI GGATC 1 cut(s) 184
Ama87I CYCGRG 1 cut(s) 635
AoxI GGCC 3 cut(s) 7, 430, 557
ApeKI GCWGC 3 cut(s) 95, 212, 417
ApoI RAATTY 1 cut(s) 71
AspS9I GGNCC 1 cut(s) 431
AsuC2I CCSGG 2 cut(s) 150, 200
AsuHPI GGTGA 1 cut(s) 137
AsuII TTCGAA 1 cut(s) 225
AsuNHI GCTAGC 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 635
BbrPI CACGTG 1 cut(s) 425
BbvI GCAGC 3 cut(s) 107, 199, 429
BccI CCATC 2 cut(s) 275, 323
BceAI ACGGC 1 cut(s) 225
BcgI CGANNNNNNTGC 6 cut(s) 84, 118, 215, 249, 409, 443
BciT130I CCWGG 1 cut(s) 435
BcnI CCSGG 2 cut(s) 150, 200
BcoDI GTCTC 2 cut(s) 166, 371
BfaI CTAG 1 cut(s) 311
BfmI CTRYAG 1 cut(s) 93
BfrI CTTAAG 1 cut(s) 173
BisI GCNGC 3 cut(s) 96, 213, 418
BlsI GCNGC 3 cut(s) 97, 214, 419
Bme1390I CCNGG 3 cut(s) 150, 200, 435
BmeT110I CYCGRG 1 cut(s) 635
BmgBI CACGTC 1 cut(s) 523
BmgT120I GGNCC 1 cut(s) 431
BmrFI CCNGG 3 cut(s) 150, 200, 435
BmrI ACTGGG 1 cut(s) 34
BmsI GCATC 1 cut(s) 223
BmtI GCTAGC 1 cut(s) 314
BmuI ACTGGG 1 cut(s) 34
BpmI CTGGAG 1 cut(s) 499
Bpu14I TTCGAA 1 cut(s) 225
BpuMI CCSGG 2 cut(s) 150, 200
BsaAI YACGTR 1 cut(s) 425
BsaHI GRCGYC 1 cut(s) 380
BsaJI CCNNGG 4 cut(s) 10, 433, 501, 560
Bsc4I CCNNNNNNNGG 1 cut(s) 199
Bse1I ACTGG 2 cut(s) 40, 482
BseBI CCWGG 1 cut(s) 435
BseDI CCNNGG 4 cut(s) 10, 433, 501, 560
BseLI CCNNNNNNNGG 1 cut(s) 199
BseNI ACTGG 2 cut(s) 40, 482
BseRI GAGGAG 1 cut(s) 637
BseXI GCAGC 3 cut(s) 107, 199, 429
BshFI GGCC 3 cut(s) 9, 432, 559
BsiHKCI CYCGRG 1 cut(s) 635
BsiSI CCGG 2 cut(s) 150, 200
BslFI GGGAC 1 cut(s) 352
BslI CCNNNNNNNGG 1 cut(s) 199
BsmAI GTCTC 2 cut(s) 166, 371
BsmBI CGTCTC 1 cut(s) 371
BsmFI GGGAC 1 cut(s) 352
BsnI GGCC 3 cut(s) 9, 432, 559
BsoBI CYCGRG 1 cut(s) 635
Bsp119I TTCGAA 1 cut(s) 225
Bsp143I GATC 1 cut(s) 189
Bsp19I CCATGG 1 cut(s) 501
BspACI CCGC 2 cut(s) 336, 549
BspANI GGCC 3 cut(s) 9, 432, 559
BspMAI CTGCAG 1 cut(s) 97
BspOI GCTAGC 1 cut(s) 314
BspPI GGATC 1 cut(s) 184
BspT104I TTCGAA 1 cut(s) 225
BspTI CTTAAG 1 cut(s) 173
BsrI ACTGG 2 cut(s) 40, 482
BssECI CCNNGG 4 cut(s) 10, 433, 501, 560
BssMI GATC 1 cut(s) 189
BssNI GRCGYC 1 cut(s) 380
BssT1I CCWWGG 3 cut(s) 10, 501, 560
Bst2UI CCWGG 1 cut(s) 435
Bst4CI ACNGT 2 cut(s) 131, 370
BstACI GRCGYC 1 cut(s) 380
BstAFI CTTAAG 1 cut(s) 173
BstBAI YACGTR 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 225
BstC8I GCNNGC 3 cut(s) 7, 312, 444
BstDEI CTNAG 1 cut(s) 696
BstDSI CCRYGG 1 cut(s) 501
BstKTI GATC 1 cut(s) 192
BstMAI GTCTC 2 cut(s) 166, 371
BstMBI GATC 1 cut(s) 189
BstNI CCWGG 1 cut(s) 435
BstSCI CCNGG 3 cut(s) 148, 198, 433
BstSFI CTRYAG 1 cut(s) 93
BstV1I GCAGC 3 cut(s) 107, 199, 429
BsuRI GGCC 3 cut(s) 9, 432, 559
BtgI CCRYGG 1 cut(s) 501
BtgZI GCGATG 1 cut(s) 246
BtrI CACGTC 1 cut(s) 523
Cac8I GCNNGC 3 cut(s) 7, 312, 444
Cfr13I GGNCC 1 cut(s) 431
Csp6I GTAC 2 cut(s) 178, 475
CviAII CATG 1 cut(s) 502
CviQI GTAC 2 cut(s) 178, 475
DdeI CTNAG 1 cut(s) 696
DpnI GATC 1 cut(s) 191
DpnII GATC 1 cut(s) 189
DraI TTTAAA 1 cut(s) 22
Eco130I CCWWGG 3 cut(s) 10, 501, 560
Eco57I CTGAAG 1 cut(s) 593
Eco72I CACGTG 1 cut(s) 425
Eco88I CYCGRG 1 cut(s) 635
EcoRII CCWGG 1 cut(s) 433
EcoT14I CCWWGG 3 cut(s) 10, 501, 560
ErhI CCWWGG 3 cut(s) 10, 501, 560
Esp3I CGTCTC 1 cut(s) 371
FaeI CATG 1 cut(s) 505
FaiI YATR 3 cut(s) 116, 138, 503
FalI AAGNNNNNCTT 2 cut(s) 15, 47
FaqI GGGAC 1 cut(s) 352
FatI CATG 1 cut(s) 501
FauI CCCGC 1 cut(s) 329
Fnu4HI GCNGC 3 cut(s) 96, 213, 418
Fsp4HI GCNGC 3 cut(s) 96, 213, 418
FspBI CTAG 1 cut(s) 311
GluI GCNGC 3 cut(s) 96, 213, 418
GsuI CTGGAG 1 cut(s) 499
HaeIII GGCC 3 cut(s) 9, 432, 559
HapII CCGG 2 cut(s) 150, 200
Hin1I GRCGYC 1 cut(s) 380
Hin1II CATG 1 cut(s) 505
HinfI GANTC 1 cut(s) 586
HpaII CCGG 2 cut(s) 150, 200
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 2 cut(s) 180, 475
Hpy188I TCNGA 3 cut(s) 29, 244, 294
Hpy8I GTNNAC 2 cut(s) 180, 475
HpyAV CCTTC 2 cut(s) 155, 221
HpyCH4III ACNGT 2 cut(s) 131, 370
HpyCH4IV ACGT 3 cut(s) 380, 424, 522
HpyCH4V TGCA 4 cut(s) 95, 446, 494, 508
HpyF3I CTNAG 1 cut(s) 696
HpySE526I ACGT 3 cut(s) 380, 424, 522
Hsp92I GRCGYC 1 cut(s) 380
Hsp92II CATG 1 cut(s) 505
Kzo9I GATC 1 cut(s) 189
LmnI GCTCC 1 cut(s) 650
LpnPI CCDG 8 cut(s) 53, 163, 213, 420, 447, 456, 463, 685
Lsp1109I GCAGC 3 cut(s) 107, 199, 429
LweI GCATC 1 cut(s) 223
MaeI CTAG 1 cut(s) 311
MaeII ACGT 3 cut(s) 380, 424, 522
MaeIII GTNAC 1 cut(s) 125
MalI GATC 1 cut(s) 191
MboI GATC 1 cut(s) 189
MboII GAAGA 2 cut(s) 596, 599
MfeI CAATTG 1 cut(s) 447
MluCI AATT 4 cut(s) 71, 185, 304, 447
MmeI TCCRAC 2 cut(s) 7, 685
MnlI CCTC 8 cut(s) 100, 203, 474, 549, 575, 589, 624, 658
MseI TTAA 2 cut(s) 21, 174
MspCI CTTAAG 1 cut(s) 173
MspI CCGG 2 cut(s) 150, 200
MspR9I CCNGG 3 cut(s) 150, 200, 435
MunI CAATTG 1 cut(s) 447
MvaI CCWGG 1 cut(s) 435
NciI CCSGG 2 cut(s) 150, 200
NcoI CCATGG 1 cut(s) 501
NdeII GATC 1 cut(s) 189
NheI GCTAGC 1 cut(s) 310
NlaIII CATG 1 cut(s) 505
NmuCI GTSAC 1 cut(s) 125
NspV TTCGAA 1 cut(s) 225
PfeI GAWTC 1 cut(s) 586
PkrI GCNGC 3 cut(s) 97, 214, 419
PmaCI CACGTG 1 cut(s) 425
PmlI CACGTG 1 cut(s) 425
Ppu21I YACGTR 1 cut(s) 425
Psp6I CCWGG 1 cut(s) 433
PspCI CACGTG 1 cut(s) 425
PspGI CCWGG 1 cut(s) 433
PspPI GGNCC 1 cut(s) 431
PstI CTGCAG 1 cut(s) 97
RsaI GTAC 2 cut(s) 179, 476
RsaNI GTAC 2 cut(s) 178, 475
SaqAI TTAA 2 cut(s) 21, 174
SatI GCNGC 3 cut(s) 96, 213, 418
Sau3AI GATC 1 cut(s) 189
Sau96I GGNCC 1 cut(s) 431
ScrFI CCNGG 3 cut(s) 150, 200, 435
SfaNI GCATC 1 cut(s) 223
SfcI CTRYAG 1 cut(s) 93
SfuI TTCGAA 1 cut(s) 225
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
Sse9I AATT 4 cut(s) 71, 185, 304, 447
SsiI CCGC 2 cut(s) 336, 549
SspMI CTAG 1 cut(s) 311
StyD4I CCNGG 3 cut(s) 148, 198, 433
StyI CCWWGG 3 cut(s) 10, 501, 560
TaaI ACNGT 2 cut(s) 131, 370
TaiI ACGT 3 cut(s) 383, 427, 525
TaqI TCGA 5 cut(s) 104, 225, 255, 318, 594
TasI AATT 4 cut(s) 71, 185, 304, 447
TatI WGTACW 2 cut(s) 177, 474
TfiI GAWTC 1 cut(s) 586
Tru1I TTAA 2 cut(s) 21, 174
Tru9I TTAA 2 cut(s) 21, 174
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 3 cut(s) 95, 212, 417
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 228, 294
Vha464I CTTAAG 1 cut(s) 173
XapI RAATTY 1 cut(s) 71
XcmI CCANNNNNNNNNTGG 1 cut(s) 329
XspI CTAG 1 cut(s) 311
ZraI GACGTC 1 cut(s) 381
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.