RLG00000007887

Belongs to the peptidase A1 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000716
Physical Location & Seq
Forward (+)
22468211 .. 22469360
1150 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007887

Sequence Viewer

Length: 996 bp
ATGGCTTCCTCTCCATTTCAGTGCCTTATTCTCCTTTGCTCACTAGCTTTCTTCTTCTTCGCCACTCCCTCACTAGCCAAAACATCTTTAAAACCCAGAGCCCTAGTTGTTCCAGGAGGCTATGTCTCCTCCACCTTCAAGCCTGCCCATTGTGGATCCTCGCAGTGCAAACTTGCCGGGTCCAAGGCGTATACCACAGAGTGCTACTCATCCCCAAAACCAGGCTGCAACAACAACTCATGTAACATCTTCCCAGACAACCCTCTCACCACCACACTCACCGGGGACGGTCAACTCGGTCAAGACGTAGTTTCCCTCCAATCCACAGATGGGTCTAATCCAGGTCCCGTTGTTTCTACTCCAAAAATCCTCTTCAGTTGTGGTGACACTGCTCTCTTGGCAAACCTTTCCGCCGGTGTTAAGGGCATGGCTGGCCTTGGCAGGCCTAAAGTCGGAAGCACGGCTGGTGTTTCTTTCGAAGGCGATGCTTCTTCAGAATACTTCACTGGAGTAAAGTCCATCAAGGTCAACGAAAAAGTTGTTCCATTTAATACTACACTGCTAGCCATTGACCAAGAAGGGTATGGCGGCACAAGAATTAGCACTCTGAAGCCTCACACGGTTTTGGAGACTTCGATCTATAAGGCAGTCGTGAATGCATTTGTGAAATCACTTGCTCACATACCAAGAGTTAAATCCGTAGCGCATTTCGGAGCGTGCTACAACTCAAAGAGGACTGGCAGCACACGTGTCGGCACGAGTGTGCCTGCAATTGACCTTGTGTTGAGCAAGCTAGGGAGTGAGGGCAAGGACGTGTTGTGTTTAGCATTTGTGGATGGCGGTGTAAGGCCAAGGACTTCTATTGTGATTGGAGGGCATCAAATCGAGGACAATCTTCTTCAATTTGATTTGGCGAACAAGAGGCTCGGATTCAGCTCCTCCTTGTTGTTCCGACAGACAAACTGTGCCAACTTCAACTTCACTTCCACTTCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TAXi_C TAXi_N

Protein Analysis

332

Amino Acids

34.73

Weight (kDa)

9.09

Isoelectric Point (pI)

34.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TAXi_N PF14543 37 - 152 1.3e-19 Xylanase inhibitor N-terminal
TAXi_C PF14541 166 - 312 5.7e-46 Xylanase inhibitor C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 191
AciI CCGC 3 cut(s) 411, 588, 840
AclWI GGATC 2 cut(s) 150, 163
AcuI CTGAAG 3 cut(s) 358, 477, 629
AcvI CACGTG 1 cut(s) 749
AdeI CACNNNGTG 1 cut(s) 201
AfiI CCNNNNNNNGG 3 cut(s) 221, 330, 452
AflIII ACRYGT 3 cut(s) 746, 748, 813
AgsI TTSAA 3 cut(s) 139, 902, 976
AjiI CACGTC 1 cut(s) 814
AjnI CCWGG 3 cut(s) 112, 220, 340
AjuI GAANNNNNNNTTGG 2 cut(s) 962, 994
AleI CACNNNNGTG 1 cut(s) 761
AluBI AGCT 3 cut(s) 47, 793, 936
AluI AGCT 3 cut(s) 47, 793, 936
Alw26I GTCTC 2 cut(s) 130, 623
AlwI GGATC 2 cut(s) 150, 163
AoxI GGCC 3 cut(s) 433, 443, 848
ApeKI GCWGC 2 cut(s) 225, 741
AspLEI GCGC 1 cut(s) 706
AspS9I GGNCC 2 cut(s) 180, 344
AsuC2I CCSGG 2 cut(s) 178, 283
AsuHPI GGTGA 3 cut(s) 259, 271, 395
AsuII TTCGAA 1 cut(s) 477
AsuNHI GCTAGC 1 cut(s) 562
AvaII GGWCC 2 cut(s) 180, 344
BamHI GGATCC 1 cut(s) 155
BanII GRGCYC 1 cut(s) 103
BauI CACGAG 1 cut(s) 757
BbrPI CACGTG 1 cut(s) 749
BbvI GCAGC 2 cut(s) 212, 753
BccI CCATC 3 cut(s) 323, 527, 830
BceAI ACGGC 1 cut(s) 477
BcgI CGANNNNNNTGC 4 cut(s) 467, 501, 733, 767
BciT130I CCWGG 3 cut(s) 114, 222, 342
BcnI CCSGG 2 cut(s) 178, 283
BcoDI GTCTC 2 cut(s) 130, 623
BfaI CTAG 5 cut(s) 44, 74, 104, 563, 794
BisI GCNGC 3 cut(s) 226, 589, 742
BlsI GCNGC 3 cut(s) 227, 590, 743
Bme1390I CCNGG 5 cut(s) 114, 178, 222, 283, 342
Bme18I GGWCC 2 cut(s) 180, 344
BmgBI CACGTC 1 cut(s) 814
BmgT120I GGNCC 2 cut(s) 180, 344
BmiI GGNNCC 3 cut(s) 157, 181, 346
BmrFI CCNGG 5 cut(s) 114, 178, 222, 283, 342
BmsI GCATC 2 cut(s) 475, 886
BmtI GCTAGC 1 cut(s) 566
BplI GAGNNNNNCTC 2 cut(s) 191, 223
BpmI CTGGAG 1 cut(s) 528
Bpu14I TTCGAA 1 cut(s) 477
BpuMI CCSGG 2 cut(s) 178, 283
BsaAI YACGTR 1 cut(s) 749
BsaJI CCNNGG 4 cut(s) 183, 282, 436, 851
BsaXI ACNNNNNCTCC 2 cut(s) 108, 138
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 330, 452
Bse118I RCCGGY 1 cut(s) 413
Bse1I ACTGG 2 cut(s) 511, 742
BseBI CCWGG 3 cut(s) 114, 222, 342
BseDI CCNNGG 4 cut(s) 183, 282, 436, 851
BseGI GGATG 2 cut(s) 209, 841
BseLI CCNNNNNNNGG 3 cut(s) 221, 330, 452
BseNI ACTGG 2 cut(s) 511, 742
BseRI GAGGAG 2 cut(s) 118, 928
BseXI GCAGC 2 cut(s) 212, 753
BshFI GGCC 3 cut(s) 435, 445, 850
BsiSI CCGG 3 cut(s) 177, 282, 414
BslFI GGGAC 2 cut(s) 299, 330
BslI CCNNNNNNNGG 3 cut(s) 221, 330, 452
BsmAI GTCTC 2 cut(s) 130, 623
BsmFI GGGAC 2 cut(s) 299, 330
BsmI GAATGC 1 cut(s) 661
BsnI GGCC 3 cut(s) 435, 445, 850
Bsp119I TTCGAA 1 cut(s) 477
Bsp1286I GDGCHC 1 cut(s) 103
Bsp143I GATC 2 cut(s) 155, 636
BspACI CCGC 3 cut(s) 411, 588, 840
BspANI GGCC 3 cut(s) 435, 445, 850
BspLI GGNNCC 3 cut(s) 157, 181, 346
BspOI GCTAGC 1 cut(s) 566
BspPI GGATC 2 cut(s) 150, 163
BspT104I TTCGAA 1 cut(s) 477
BsrFI RCCGGY 1 cut(s) 413
BsrI ACTGG 2 cut(s) 511, 742
BssAI RCCGGY 1 cut(s) 413
BssECI CCNNGG 4 cut(s) 183, 282, 436, 851
BssMI GATC 2 cut(s) 155, 636
BssNAI GTATAC 1 cut(s) 192
BssSI CACGAG 1 cut(s) 757
BssT1I CCWWGG 3 cut(s) 183, 436, 851
Bst1107I GTATAC 1 cut(s) 192
Bst2BI CACGAG 1 cut(s) 757
Bst2UI CCWGG 3 cut(s) 114, 222, 342
Bst4CI ACNGT 3 cut(s) 290, 622, 965
Bst6I CTCTTC 1 cut(s) 377
BstBAI YACGTR 1 cut(s) 749
BstBI TTCGAA 1 cut(s) 477
BstC8I GCNNGC 7 cut(s) 144, 433, 443, 564, 718, 768, 791
BstDEI CTNAG 1 cut(s) 993
BstF5I GGATG 2 cut(s) 209, 841
BstHHI GCGC 1 cut(s) 706
BstKTI GATC 2 cut(s) 158, 639
BstMAI GTCTC 2 cut(s) 130, 623
BstMBI GATC 2 cut(s) 155, 636
BstMWI GCNNNNNNNGC 2 cut(s) 398, 432
BstNI CCWGG 3 cut(s) 114, 222, 342
BstSCI CCNGG 5 cut(s) 112, 176, 220, 281, 340
BstV1I GCAGC 2 cut(s) 212, 753
BstX2I RGATCY 1 cut(s) 155
BstYI RGATCY 1 cut(s) 155
BstZ17I GTATAC 1 cut(s) 192
BsuRI GGCC 3 cut(s) 435, 445, 850
BtgZI GCGATG 1 cut(s) 498
BtrI CACGTC 1 cut(s) 814
BtsCI GGATG 2 cut(s) 209, 841
BtsI GCAGTG 3 cut(s) 170, 387, 557
BtsIMutI CAGTG 5 cut(s) 26, 170, 387, 504, 557
Cac8I GCNNGC 7 cut(s) 144, 433, 443, 564, 718, 768, 791
CfoI GCGC 1 cut(s) 706
Cfr10I RCCGGY 1 cut(s) 413
Cfr13I GGNCC 2 cut(s) 180, 344
CviAII CATG 2 cut(s) 240, 427
DdeI CTNAG 1 cut(s) 993
DpnI GATC 2 cut(s) 157, 638
DpnII GATC 2 cut(s) 155, 636
DraI TTTAAA 1 cut(s) 90
DraIII CACNNNGTG 1 cut(s) 201
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
EciI GGCGGA 1 cut(s) 400
Eco130I CCWWGG 3 cut(s) 183, 436, 851
Eco147I AGGCCT 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 103
Eco47I GGWCC 2 cut(s) 180, 344
Eco57I CTGAAG 3 cut(s) 358, 477, 629
Eco72I CACGTG 1 cut(s) 749
EcoO109I RGGNCCY 1 cut(s) 344
EcoRII CCWGG 3 cut(s) 112, 220, 340
EcoT14I CCWWGG 3 cut(s) 183, 436, 851
EcoT22I ATGCAT 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 103
ErhI CCWWGG 3 cut(s) 183, 436, 851
FaeI CATG 2 cut(s) 243, 430
FaiI YATR 7 cut(s) 123, 192, 241, 428, 585, 642, 683
FaqI GGGAC 2 cut(s) 299, 330
FatI CATG 2 cut(s) 239, 426
FblI GTMKAC 1 cut(s) 191
Fnu4HI GCNGC 3 cut(s) 226, 589, 742
FokI GGATG 2 cut(s) 196, 848
FriOI GRGCYC 1 cut(s) 103
Fsp4HI GCNGC 3 cut(s) 226, 589, 742
FspBI CTAG 5 cut(s) 44, 74, 104, 563, 794
GlaI GCGC 1 cut(s) 705
GluI GCNGC 3 cut(s) 226, 589, 742
GsuI CTGGAG 1 cut(s) 528
HaeIII GGCC 3 cut(s) 435, 445, 850
HapII CCGG 3 cut(s) 177, 282, 414
HhaI GCGC 1 cut(s) 706
Hin1II CATG 2 cut(s) 243, 430
Hin6I GCGC 1 cut(s) 704
HinP1I GCGC 1 cut(s) 704
HincII GTYRAC 2 cut(s) 293, 529
HindII GTYRAC 2 cut(s) 293, 529
HinfI GANTC 1 cut(s) 930
HpaII CCGG 3 cut(s) 177, 282, 414
HphI GGTGA 3 cut(s) 259, 271, 395
Hpy166II GTNNAC 3 cut(s) 192, 293, 529
Hpy188I TCNGA 6 cut(s) 455, 496, 609, 713, 929, 953
Hpy188III TCNNGA 2 cut(s) 302, 652
Hpy8I GTNNAC 3 cut(s) 192, 293, 529
HpyAV CCTTC 3 cut(s) 145, 473, 572
HpyCH4III ACNGT 3 cut(s) 290, 622, 965
HpyCH4IV ACGT 3 cut(s) 306, 748, 813
HpyCH4V TGCA 4 cut(s) 168, 228, 659, 770
HpyF10VI GCNNNNNNNGC 2 cut(s) 398, 432
HpyF3I CTNAG 1 cut(s) 993
HpySE526I ACGT 3 cut(s) 306, 748, 813
Hsp92II CATG 2 cut(s) 243, 430
HspAI GCGC 1 cut(s) 704
Kzo9I GATC 2 cut(s) 155, 636
LmnI GCTCC 2 cut(s) 713, 941
Lsp1109I GCAGC 2 cut(s) 212, 753
LweI GCATC 2 cut(s) 475, 886
MaeI CTAG 5 cut(s) 44, 74, 104, 563, 794
MaeII ACGT 3 cut(s) 306, 748, 813
MaeIII GTNAC 2 cut(s) 242, 383
MalI GATC 2 cut(s) 157, 638
MboI GATC 2 cut(s) 155, 636
MboII GAAGA 8 cut(s) 43, 46, 49, 241, 364, 483, 887, 890
MfeI CAATTG 1 cut(s) 771
MflI RGATCY 1 cut(s) 155
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 3 cut(s) 597, 771, 902
MmeI TCCRAC 2 cut(s) 433, 976
Mph1103I ATGCAT 1 cut(s) 661
MseI TTAA 4 cut(s) 89, 420, 549, 693
MslI CAYNNNNRTG 2 cut(s) 19, 761
MspI CCGG 3 cut(s) 177, 282, 414
MspR9I CCNGG 5 cut(s) 114, 178, 222, 283, 342
MunI CAATTG 1 cut(s) 771
Mva1269I GAATGC 1 cut(s) 661
MvaI CCWGG 3 cut(s) 114, 222, 342
MwoI GCNNNNNNNGC 2 cut(s) 398, 432
NciI CCSGG 2 cut(s) 178, 283
NdeII GATC 2 cut(s) 155, 636
NheI GCTAGC 1 cut(s) 562
NlaIII CATG 2 cut(s) 243, 430
NlaIV GGNNCC 3 cut(s) 157, 181, 346
NmuCI GTSAC 1 cut(s) 383
NsiI ATGCAT 1 cut(s) 661
NspV TTCGAA 1 cut(s) 477
OliI CACNNNNGTG 1 cut(s) 761
PceI AGGCCT 1 cut(s) 445
PcsI WCGNNNNNNNCGW 1 cut(s) 303
PctI GAATGC 1 cut(s) 661
PfeI GAWTC 1 cut(s) 930
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 3 cut(s) 227, 590, 743
PmaCI CACGTG 1 cut(s) 749
PmlI CACGTG 1 cut(s) 749
Ppu21I YACGTR 1 cut(s) 749
PpuMI RGGWCCY 1 cut(s) 344
Psp5II RGGWCCY 1 cut(s) 344
Psp6I CCWGG 3 cut(s) 112, 220, 340
PspCI CACGTG 1 cut(s) 749
PspGI CCWGG 3 cut(s) 112, 220, 340
PspN4I GGNNCC 3 cut(s) 157, 181, 346
PspPI GGNCC 2 cut(s) 180, 344
PspPPI RGGWCCY 1 cut(s) 344
PsuI RGATCY 1 cut(s) 155
RseI CAYNNNNRTG 2 cut(s) 19, 761
SaqAI TTAA 4 cut(s) 89, 420, 549, 693
SatI GCNGC 3 cut(s) 226, 589, 742
Sau3AI GATC 2 cut(s) 155, 636
Sau96I GGNCC 2 cut(s) 180, 344
ScrFI CCNGG 5 cut(s) 114, 178, 222, 283, 342
SduI GDGCHC 1 cut(s) 103
SfaNI GCATC 2 cut(s) 475, 886
SfuI TTCGAA 1 cut(s) 477
SgrAI CRCCGGYG 1 cut(s) 413
SinI GGWCC 2 cut(s) 180, 344
SmiMI CAYNNNNRTG 2 cut(s) 19, 761
Sse9I AATT 3 cut(s) 597, 771, 902
SseBI AGGCCT 1 cut(s) 445
SsiI CCGC 3 cut(s) 411, 588, 840
SspMI CTAG 5 cut(s) 44, 74, 104, 563, 794
StuI AGGCCT 1 cut(s) 445
StyD4I CCNGG 5 cut(s) 112, 176, 220, 281, 340
StyI CCWWGG 3 cut(s) 183, 436, 851
TaaI ACNGT 3 cut(s) 290, 622, 965
TaiI ACGT 3 cut(s) 309, 751, 816
TaqI TCGA 3 cut(s) 477, 635, 885
TaqII GACCGA 1 cut(s) 287
TasI AATT 3 cut(s) 597, 771, 902
TauI GCSGC 1 cut(s) 591
TfiI GAWTC 1 cut(s) 930
Tru1I TTAA 4 cut(s) 89, 420, 549, 693
Tru9I TTAA 4 cut(s) 89, 420, 549, 693
TscAI CASTG 5 cut(s) 26, 170, 394, 511, 564
TseFI GTSAC 1 cut(s) 383
TseI GCWGC 2 cut(s) 225, 741
Tsp45I GTSAC 1 cut(s) 383
TspGWI ACGGA 1 cut(s) 688
TspRI CASTG 5 cut(s) 26, 170, 394, 511, 564
VpaK11BI GGWCC 2 cut(s) 180, 344
XcmI CCANNNNNNNNNTGG 2 cut(s) 326, 581
XmiI GTMKAC 1 cut(s) 191
XspI CTAG 5 cut(s) 44, 74, 104, 563, 794
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.