FvH4_4g24771

Vinorine synthase-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
Physical Location & Seq
Reverse (-)
26793125 .. 26797928
4804 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24771.t1

Sequence Viewer

Length: 798 bp
ATGGTTGACACGGTTGAAAATCCAGAGCAATCAAAACAGAAACGCAACATCACGGCCAACACAACCCTTACAGTGGAGGAGTACAACCAACTCAAGGCCTTACTGAAAATCCAGAACGCCAACCTCTTCCCACCAAAGGACCTCACCGGGTATATCAATCCAAGCATTGCGTCTATCACAAAGAACAAGGTAACAAAAAGGTTTGTGTTTGACGCCTCTAACATAGAGGTGCTCAGAGTGAAATATGAAGGCAATGCAGGTTTGGAGAAGGATGAAAAACACCCATCGCGTGTTGAGGTCTTATCGGCTTTCATATGGAGCCGATTTGTGGCGGTTACTAAGGATACTGGAGCAGCTGAGAAGTTGTACATGGTGATCCATGCAGTGAATTTGCGTTCAAGGTTTGATCCACCATTGCCAGAACATTCTTTTGGCAACCTTTATCGTGTATGTGAAGAAATAAGCAAGATCGACAAGGACTACTTGAAAAGACTGCAACAAGGCGATGAGCACTTGAGTTTCATCAGGAGAAACACTGATAGTTTTATGAAAGGAGGGATTGTTGCATTTAGTTTCAGTAGTTTGTGCAGTCTTCCAATATATGATAGTGATTTTGGTTGGGGAAGGCCTACGTGGGTAGGTTCGCCGGCTCGGACCTTCAAAAACCTGGTCCATTTCCTGGACACTAAAGAGGGTGATGGAATAGAAGCTTATATTTGCTTGGAGAAAGAAGTAATGGCTAAATTTGAGACTGACAGTGAGTTCCTCGCTTATGTTAATCCAAATGATGTGTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

266

Amino Acids

30.15

Weight (kDa)

6.25

Isoelectric Point (pI)

43.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 42 - 155 1e-12 Transferase family
Transferase PF02458 153 - 255 2e-14 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 248
AccB7I CCANNNNNTGG 1 cut(s) 679
AccII CGCG 1 cut(s) 289
AciI CCGC 1 cut(s) 332
AclWI GGATC 2 cut(s) 370, 401
AcoI YGGCCR 1 cut(s) 54
AcsI RAATTY 2 cut(s) 388, 743
AcyI GRCGYC 1 cut(s) 213
AfaI GTAC 2 cut(s) 83, 368
AfiI CCNNNNNNNGG 5 cut(s) 73, 94, 136, 328, 679
AgsI TTSAA 4 cut(s) 17, 399, 487, 661
AjnI CCWGG 2 cut(s) 666, 678
AjuI GAANNNNNNNTTGG 2 cut(s) 414, 446
AluBI AGCT 2 cut(s) 356, 710
AluI AGCT 2 cut(s) 356, 710
Alw21I GWGCWC 2 cut(s) 234, 513
Alw26I GTCTC 1 cut(s) 743
AlwI GGATC 2 cut(s) 370, 401
AoxI GGCC 3 cut(s) 54, 96, 626
ApeKI GCWGC 1 cut(s) 353
ApoI RAATTY 2 cut(s) 388, 743
ArsI GACNNNNNNTTYG 2 cut(s) 654, 686
AspS9I GGNCC 3 cut(s) 139, 654, 670
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 3 cut(s) 136, 385, 707
AvaII GGWCC 3 cut(s) 139, 654, 670
BbsI GAAGAC 1 cut(s) 584
Bbv12I GWGCWC 2 cut(s) 234, 513
BbvI GCAGC 1 cut(s) 365
BccI CCATC 2 cut(s) 292, 692
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 2 cut(s) 668, 680
BciVI GTATCC 1 cut(s) 337
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 1 cut(s) 743
BfuAI ACCTGC 1 cut(s) 248
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 1 cut(s) 354
BlsI GCNGC 1 cut(s) 355
Bme1390I CCNGG 3 cut(s) 148, 668, 680
Bme18I GGWCC 3 cut(s) 139, 654, 670
BmgT120I GGNCC 3 cut(s) 139, 654, 670
BmiI GGNNCC 1 cut(s) 320
BmrFI CCNGG 3 cut(s) 148, 668, 680
BpiI GAAGAC 1 cut(s) 584
BpmI CTGGAG 1 cut(s) 369
BpuEI CTTGAG 2 cut(s) 77, 535
BpuMI CCSGG 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 633
BsaHI GRCGYC 1 cut(s) 213
BsaXI ACNNNNNCTCC 2 cut(s) 546, 576
Bsc4I CCNNNNNNNGG 5 cut(s) 73, 94, 136, 328, 679
Bse118I RCCGGY 1 cut(s) 646
Bse1I ACTGG 1 cut(s) 352
Bse3DI GCAATG 3 cut(s) 165, 259, 413
BseBI CCWGG 2 cut(s) 668, 680
BseGI GGATG 1 cut(s) 277
BseLI CCNNNNNNNGG 5 cut(s) 73, 94, 136, 328, 679
BseMI GCAATG 3 cut(s) 165, 259, 413
BseMII CTCAG 2 cut(s) 247, 348
BseNI ACTGG 1 cut(s) 352
BseRI GAGGAG 1 cut(s) 92
BseXI GCAGC 1 cut(s) 365
BsgI GTGCAG 1 cut(s) 607
Bsh1236I CGCG 1 cut(s) 289
BshFI GGCC 3 cut(s) 56, 98, 628
BsiHKAI GWGCWC 2 cut(s) 234, 513
BsiSI CCGG 2 cut(s) 147, 647
BslI CCNNNNNNNGG 5 cut(s) 73, 94, 136, 328, 679
BsmAI GTCTC 1 cut(s) 743
BsnI GGCC 3 cut(s) 56, 98, 628
Bsp1286I GDGCHC 2 cut(s) 234, 513
Bsp1407I TGTACA 1 cut(s) 366
Bsp143I GATC 3 cut(s) 375, 406, 468
BspACI CCGC 1 cut(s) 332
BspANI GGCC 3 cut(s) 56, 98, 628
BspCNI CTCAG 2 cut(s) 246, 349
BspFNI CGCG 1 cut(s) 289
BspLI GGNNCC 1 cut(s) 320
BspMI ACCTGC 1 cut(s) 248
BspPI GGATC 2 cut(s) 370, 401
BsrDI GCAATG 3 cut(s) 165, 259, 413
BsrFI RCCGGY 1 cut(s) 646
BsrGI TGTACA 1 cut(s) 366
BsrI ACTGG 1 cut(s) 352
BssAI RCCGGY 1 cut(s) 646
BssMI GATC 3 cut(s) 375, 406, 468
BssNI GRCGYC 1 cut(s) 213
Bst2UI CCWGG 2 cut(s) 668, 680
Bst4CI ACNGT 3 cut(s) 13, 73, 758
Bst6I CTCTTC 1 cut(s) 131
BstACI GRCGYC 1 cut(s) 213
BstAUI TGTACA 1 cut(s) 366
BstBAI YACGTR 1 cut(s) 633
BstC8I GCNNGC 1 cut(s) 648
BstDEI CTNAG 3 cut(s) 233, 339, 357
BstF5I GGATG 1 cut(s) 277
BstFNI CGCG 1 cut(s) 289
BstKTI GATC 3 cut(s) 378, 409, 471
BstMAI GTCTC 1 cut(s) 743
BstMBI GATC 3 cut(s) 375, 406, 468
BstNI CCWGG 2 cut(s) 668, 680
BstSCI CCNGG 3 cut(s) 146, 666, 678
BstUI CGCG 1 cut(s) 289
BstV1I GCAGC 1 cut(s) 365
BstV2I GAAGAC 1 cut(s) 584
BsuI GTATCC 1 cut(s) 337
BsuRI GGCC 3 cut(s) 56, 98, 628
BtgZI GCGATG 2 cut(s) 270, 519
BtsCI GGATG 1 cut(s) 277
BtsI GCAGTG 1 cut(s) 390
BtsIMutI CAGTG 4 cut(s) 78, 390, 534, 763
BveI ACCTGC 1 cut(s) 248
Cac8I GCNNGC 1 cut(s) 648
Cfr10I RCCGGY 1 cut(s) 646
Cfr13I GGNCC 3 cut(s) 139, 654, 670
CseI GACGC 2 cut(s) 159, 221
CsiI ACCWGGT 1 cut(s) 666
Csp6I GTAC 2 cut(s) 82, 367
CviAII CATG 2 cut(s) 370, 380
CviJI RGCY 9 cut(s) 56, 98, 308, 321, 356, 628, 650, 710, 740
CviKI_1 RGCY 9 cut(s) 56, 98, 308, 321, 356, 628, 650, 710, 740
CviQI GTAC 2 cut(s) 82, 367
DdeI CTNAG 3 cut(s) 233, 339, 357
DpnI GATC 3 cut(s) 377, 408, 470
DpnII GATC 3 cut(s) 375, 406, 468
EaeI YGGCCR 1 cut(s) 54
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco147I AGGCCT 2 cut(s) 98, 628
Eco47I GGWCC 3 cut(s) 139, 654, 670
EcoO109I RGGNCCY 1 cut(s) 139
EcoRII CCWGG 2 cut(s) 666, 678
FaeI CATG 2 cut(s) 373, 383
FalI AAGNNNNNCTT 2 cut(s) 467, 499
FatI CATG 2 cut(s) 369, 379
FauNDI CATATG 1 cut(s) 314
Fnu4HI GCNGC 1 cut(s) 354
FokI GGATG 1 cut(s) 284
Fsp4HI GCNGC 1 cut(s) 354
GluI GCNGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 369
HaeIII GGCC 3 cut(s) 56, 98, 628
HapII CCGG 2 cut(s) 147, 647
HgaI GACGC 2 cut(s) 159, 221
Hin1I GRCGYC 1 cut(s) 213
Hin1II CATG 2 cut(s) 373, 383
HincII GTYRAC 1 cut(s) 7
HindII GTYRAC 1 cut(s) 7
HindIII AAGCTT 1 cut(s) 708
HpaII CCGG 2 cut(s) 147, 647
HphI GGTGA 3 cut(s) 136, 385, 707
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 236, 654
Hpy188III TCNNGA 3 cut(s) 23, 112, 526
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 4 cut(s) 242, 262, 618, 667
HpyCH4III ACNGT 3 cut(s) 13, 73, 758
HpyCH4IV ACGT 1 cut(s) 632
HpyCH4V TGCA 5 cut(s) 257, 383, 496, 566, 588
HpyF3I CTNAG 3 cut(s) 233, 339, 357
HpySE526I ACGT 1 cut(s) 632
Hsp92I GRCGYC 1 cut(s) 213
Hsp92II CATG 2 cut(s) 373, 383
KroI GCCGGC 1 cut(s) 646
KroNI GCCGGC 1 cut(s) 648
Kzo9I GATC 3 cut(s) 375, 406, 468
LmnI GCTCC 2 cut(s) 318, 350
Lsp1109I GCAGC 1 cut(s) 365
MabI ACCWGGT 1 cut(s) 666
MaeII ACGT 1 cut(s) 632
MaeIII GTNAC 2 cut(s) 190, 334
MalI GATC 3 cut(s) 377, 408, 470
MboI GATC 3 cut(s) 375, 406, 468
MboII GAAGA 3 cut(s) 118, 467, 584
MhlI GDGCHC 2 cut(s) 234, 513
MluCI AATT 2 cut(s) 388, 743
MnlI CCTC 9 cut(s) 70, 134, 152, 220, 226, 289, 548, 685, 776
MroNI GCCGGC 1 cut(s) 646
MseI TTAA 1 cut(s) 777
MslI CAYNNNNRTG 1 cut(s) 227
MspA1I CMGCKG 1 cut(s) 356
MspI CCGG 2 cut(s) 147, 647
MspR9I CCNGG 3 cut(s) 148, 668, 680
MvaI CCWGG 2 cut(s) 668, 680
MvnI CGCG 1 cut(s) 289
NaeI GCCGGC 1 cut(s) 648
NciI CCSGG 1 cut(s) 148
NdeI CATATG 1 cut(s) 314
NdeII GATC 3 cut(s) 375, 406, 468
NgoMIV GCCGGC 1 cut(s) 646
NlaIII CATG 2 cut(s) 373, 383
NlaIV GGNNCC 1 cut(s) 320
PceI AGGCCT 2 cut(s) 98, 628
PdiI GCCGGC 1 cut(s) 648
PflMI CCANNNNNTGG 1 cut(s) 679
PfoI TCCNGGA 1 cut(s) 678
PkrI GCNGC 1 cut(s) 355
Ppu21I YACGTR 1 cut(s) 633
PpuMI RGGWCCY 1 cut(s) 139
Psp5II RGGWCCY 1 cut(s) 139
Psp6I CCWGG 2 cut(s) 666, 678
PspGI CCWGG 2 cut(s) 666, 678
PspN4I GGNNCC 1 cut(s) 320
PspPI GGNCC 3 cut(s) 139, 654, 670
PspPPI RGGWCCY 1 cut(s) 139
PvuII CAGCTG 1 cut(s) 356
RsaI GTAC 2 cut(s) 83, 368
RsaNI GTAC 2 cut(s) 82, 367
RseI CAYNNNNRTG 1 cut(s) 227
SaqAI TTAA 1 cut(s) 777
SatI GCNGC 1 cut(s) 354
Sau3AI GATC 3 cut(s) 375, 406, 468
Sau96I GGNCC 3 cut(s) 139, 654, 670
ScrFI CCNGG 3 cut(s) 148, 668, 680
SduI GDGCHC 2 cut(s) 234, 513
SexAI ACCWGGT 1 cut(s) 666
SinI GGWCC 3 cut(s) 139, 654, 670
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 2 cut(s) 92, 514
SmoI CTYRAG 2 cut(s) 92, 514
Sse9I AATT 2 cut(s) 388, 743
SseBI AGGCCT 2 cut(s) 98, 628
SsiI CCGC 1 cut(s) 332
StuI AGGCCT 2 cut(s) 98, 628
StyD4I CCNGG 3 cut(s) 146, 666, 678
TaaI ACNGT 3 cut(s) 13, 73, 758
TaiI ACGT 1 cut(s) 635
TaqI TCGA 1 cut(s) 471
TasI AATT 2 cut(s) 388, 743
TatI WGTACW 2 cut(s) 81, 366
Tru1I TTAA 1 cut(s) 777
Tru9I TTAA 1 cut(s) 777
TscAI CASTG 4 cut(s) 78, 390, 541, 763
TseI GCWGC 1 cut(s) 353
TspDTI ATGAA 5 cut(s) 261, 288, 301, 511, 563
TspRI CASTG 4 cut(s) 78, 390, 541, 763
Van91I CCANNNNNTGG 1 cut(s) 679
VpaK11BI GGWCC 3 cut(s) 139, 654, 670
XapI RAATTY 2 cut(s) 388, 743
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.