MD13G1109100.v1.1

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000622
Physical Location & Seq
Forward (+)
7899091 .. 7899729
639 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1109100.v1.1.491

Sequence Viewer

Length: 639 bp
ATGGGAAGATCAATGAAGGTCGAGATTGAAGTGATCTCCAATAAGATAATCAAACCATCTTCTCCAACTCCTGGCCACCTTCGTCATTACCAATTCTCCTTTCTTGATCAAATAGCTCCCCAAGTCTACAACCCTTTACTCCTCTTCTATGAATACAATGCCAAGACACATCCCAATATCACTGAAATATCCAACCACCTTAAGAACTCGTTATCCAAGGTCCTATCCCTATTCTACCCGCTAGCGGGAATCAAACACAACCACTTCATACATTGCAATGACGAGGGCATCCCCTACGTCAAGGCTCAAGTGCTGAATTGCACTCTCTCTGATGTTCTCAGCAACCCCAACCCTGGTGAACTTAACAAGTTCATGCCATTTGAACTTGATGATATTACCAATCCATTACCCTTAGGGGTCCAGCTCAACATATTTCAGTGTGGAGGATTTGCTATTGGCCAATGCATTTCTCACAAGATTGCTGATGGGTTGTCCTATTTCATGTTCAGCAAAATTTGGGCAGCCATTGCCCGTGGGAACCAAGCCAACATAGACCCTCCACCATTTGTGTCAGCCACTCTTCCCACCAAAGGAGTTCAATACTGGATTCGATGGAGGCGTTGGAATCACAAAGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

213

Amino Acids

24.0

Weight (kDa)

9.02

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 8 - 194 4.1e-42 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 71
AccI GTMKAC 1 cut(s) 126
AciI CCGC 2 cut(s) 239, 245
AcoI YGGCCR 2 cut(s) 73, 457
AcsI RAATTY 1 cut(s) 513
AfiI CCNNNNNNNGG 5 cut(s) 71, 244, 245, 353, 590
AflII CTTAAG 1 cut(s) 200
AgsI TTSAA 3 cut(s) 29, 383, 599
AjnI CCWGG 2 cut(s) 70, 352
AjuI GAANNNNNNNTTGG 2 cut(s) 84, 116
AloI GAACNNNNNNTCC 2 cut(s) 197, 229
AluBI AGCT 2 cut(s) 116, 424
AluI AGCT 2 cut(s) 116, 424
AoxI GGCC 2 cut(s) 73, 457
ApeKI GCWGC 1 cut(s) 521
ApoI RAATTY 1 cut(s) 513
AspS9I GGNCC 2 cut(s) 220, 418
AsuHPI GGTGA 1 cut(s) 368
AsuNHI GCTAGC 1 cut(s) 241
AvaII GGWCC 2 cut(s) 220, 418
AxyI CCTNAGG 1 cut(s) 412
BalI TGGCCA 2 cut(s) 75, 459
BbvI GCAGC 1 cut(s) 533
BccI CCATC 3 cut(s) 64, 479, 606
BciT130I CCWGG 2 cut(s) 72, 354
BclI TGATCA 1 cut(s) 106
BfaI CTAG 1 cut(s) 242
BfrI CTTAAG 1 cut(s) 200
BisI GCNGC 1 cut(s) 522
BlsI GCNGC 1 cut(s) 523
Bme1390I CCNGG 2 cut(s) 72, 354
Bme18I GGWCC 2 cut(s) 220, 418
BmgT120I GGNCC 2 cut(s) 220, 418
BmiI GGNNCC 2 cut(s) 419, 539
BmrFI CCNGG 2 cut(s) 72, 354
BmsI GCATC 1 cut(s) 297
BmtI GCTAGC 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 291
BsaJI CCNNGG 3 cut(s) 216, 352, 532
BsaXI ACNNNNNCTCC 2 cut(s) 80, 110
Bsc4I CCNNNNNNNGG 5 cut(s) 71, 244, 245, 353, 590
Bse1I ACTGG 1 cut(s) 608
Bse21I CCTNAGG 1 cut(s) 412
Bse3DI GCAATG 3 cut(s) 271, 283, 525
BseBI CCWGG 2 cut(s) 72, 354
BseDI CCNNGG 3 cut(s) 216, 352, 532
BseGI GGATG 2 cut(s) 169, 288
BseLI CCNNNNNNNGG 5 cut(s) 71, 244, 245, 353, 590
BseMI GCAATG 3 cut(s) 271, 283, 525
BseMII CTCAG 1 cut(s) 352
BseNI ACTGG 1 cut(s) 608
BseRI GAGGAG 1 cut(s) 131
BseXI GCAGC 1 cut(s) 533
BshFI GGCC 2 cut(s) 75, 459
BslI CCNNNNNNNGG 5 cut(s) 71, 244, 245, 353, 590
BsnI GGCC 2 cut(s) 75, 459
Bsp143I GATC 3 cut(s) 8, 33, 106
BspACI CCGC 2 cut(s) 239, 245
BspANI GGCC 2 cut(s) 75, 459
BspCNI CTCAG 1 cut(s) 351
BspLI GGNNCC 2 cut(s) 419, 539
BspOI GCTAGC 1 cut(s) 245
BspTI CTTAAG 1 cut(s) 200
BsrDI GCAATG 3 cut(s) 271, 283, 525
BsrI ACTGG 1 cut(s) 608
BssECI CCNNGG 3 cut(s) 216, 352, 532
BssMI GATC 3 cut(s) 8, 33, 106
BssT1I CCWWGG 1 cut(s) 216
Bst2UI CCWGG 2 cut(s) 72, 354
Bst6I CTCTTC 2 cut(s) 149, 585
BstAFI CTTAAG 1 cut(s) 200
BstAPI GCANNNNNTGC 1 cut(s) 527
BstC8I GCNNGC 1 cut(s) 243
BstDEI CTNAG 2 cut(s) 338, 412
BstDSI CCRYGG 1 cut(s) 532
BstF5I GGATG 2 cut(s) 169, 288
BstKTI GATC 3 cut(s) 11, 36, 109
BstMBI GATC 3 cut(s) 8, 33, 106
BstMWI GCNNNNNNNGC 1 cut(s) 527
BstNI CCWGG 2 cut(s) 72, 354
BstSCI CCNGG 2 cut(s) 70, 352
BstV1I GCAGC 1 cut(s) 533
Bsu36I CCTNAGG 1 cut(s) 412
BsuRI GGCC 2 cut(s) 75, 459
BtgI CCRYGG 1 cut(s) 532
BtsCI GGATG 2 cut(s) 169, 288
BtsIMutI CAGTG 2 cut(s) 180, 443
Cac8I GCNNGC 1 cut(s) 243
Cfr13I GGNCC 2 cut(s) 220, 418
CviAII CATG 2 cut(s) 373, 502
CviJI RGCY 8 cut(s) 75, 116, 305, 424, 459, 524, 545, 575
CviKI_1 RGCY 8 cut(s) 75, 116, 305, 424, 459, 524, 545, 575
DdeI CTNAG 2 cut(s) 338, 412
DpnI GATC 3 cut(s) 10, 35, 108
DpnII GATC 3 cut(s) 8, 33, 106
EaeI YGGCCR 2 cut(s) 73, 457
Eam1104I CTCTTC 2 cut(s) 149, 585
EarI CTCTTC 2 cut(s) 149, 585
Eco130I CCWWGG 1 cut(s) 216
Eco47I GGWCC 2 cut(s) 220, 418
Eco81I CCTNAGG 1 cut(s) 412
EcoO109I RGGNCCY 1 cut(s) 220
EcoRII CCWGG 2 cut(s) 70, 352
EcoT14I CCWWGG 1 cut(s) 216
EcoT22I ATGCAT 1 cut(s) 467
ErhI CCWWGG 1 cut(s) 216
FaeI CATG 2 cut(s) 376, 505
FaiI YATR 6 cut(s) 150, 269, 374, 431, 503, 551
FatI CATG 2 cut(s) 372, 501
FauI CCCGC 2 cut(s) 238, 246
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 126
Fnu4HI GCNGC 1 cut(s) 522
FokI GGATG 2 cut(s) 156, 275
Fsp4HI GCNGC 1 cut(s) 522
FspBI CTAG 1 cut(s) 242
GluI GCNGC 1 cut(s) 522
HaeIII GGCC 2 cut(s) 75, 459
Hin1II CATG 2 cut(s) 376, 505
HinfI GANTC 3 cut(s) 249, 607, 625
HphI GGTGA 1 cut(s) 368
Hpy166II GTNNAC 2 cut(s) 127, 359
Hpy188I TCNGA 1 cut(s) 331
Hpy188III TCNNGA 2 cut(s) 22, 104
Hpy8I GTNNAC 2 cut(s) 127, 359
HpyAV CCTTC 2 cut(s) 10, 89
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 3 cut(s) 276, 321, 465
HpyF10VI GCNNNNNNNGC 1 cut(s) 527
HpyF3I CTNAG 2 cut(s) 338, 412
HpySE526I ACGT 1 cut(s) 297
Hsp92II CATG 2 cut(s) 376, 505
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 3 cut(s) 8, 33, 106
LmnI GCTCC 1 cut(s) 121
LpnPI CCDG 6 cut(s) 57, 84, 339, 366, 434, 589
Lsp1109I GCAGC 1 cut(s) 533
LweI GCATC 1 cut(s) 297
MaeI CTAG 1 cut(s) 242
MaeII ACGT 1 cut(s) 297
MalI GATC 3 cut(s) 10, 35, 108
MboI GATC 3 cut(s) 8, 33, 106
MboII GAAGA 4 cut(s) 18, 51, 136, 572
MlsI TGGCCA 2 cut(s) 75, 459
MluCI AATT 3 cut(s) 92, 316, 513
MluNI TGGCCA 2 cut(s) 75, 459
MmeI TCCRAC 3 cut(s) 89, 216, 602
MnlI CCTC 5 cut(s) 152, 277, 437, 567, 609
Mox20I TGGCCA 2 cut(s) 75, 459
Mph1103I ATGCAT 1 cut(s) 467
MscI TGGCCA 2 cut(s) 75, 459
MseI TTAA 2 cut(s) 201, 363
MslI CAYNNNNRTG 1 cut(s) 276
Msp20I TGGCCA 2 cut(s) 75, 459
MspCI CTTAAG 1 cut(s) 200
MspR9I CCNGG 2 cut(s) 72, 354
MvaI CCWGG 2 cut(s) 72, 354
MwoI GCNNNNNNNGC 1 cut(s) 527
NdeII GATC 3 cut(s) 8, 33, 106
NheI GCTAGC 1 cut(s) 241
NlaIII CATG 2 cut(s) 376, 505
NlaIV GGNNCC 2 cut(s) 419, 539
NsiI ATGCAT 1 cut(s) 467
PcsI WCGNNNNNNNCGW 1 cut(s) 616
PfeI GAWTC 3 cut(s) 249, 607, 625
PflMI CCANNNNNTGG 1 cut(s) 71
PkrI GCNGC 1 cut(s) 523
PpuMI RGGWCCY 1 cut(s) 220
Psp5II RGGWCCY 1 cut(s) 220
Psp6I CCWGG 2 cut(s) 70, 352
PspGI CCWGG 2 cut(s) 70, 352
PspN4I GGNNCC 2 cut(s) 419, 539
PspPI GGNCC 2 cut(s) 220, 418
PspPPI RGGWCCY 1 cut(s) 220
RseI CAYNNNNRTG 1 cut(s) 276
SaqAI TTAA 2 cut(s) 201, 363
SatI GCNGC 1 cut(s) 522
Sau3AI GATC 3 cut(s) 8, 33, 106
Sau96I GGNCC 2 cut(s) 220, 418
ScrFI CCNGG 2 cut(s) 72, 354
SetI ASST 7 cut(s) 21, 81, 118, 201, 222, 300, 426
SfaNI GCATC 1 cut(s) 297
SinI GGWCC 2 cut(s) 220, 418
SmiMI CAYNNNNRTG 1 cut(s) 276
SmlI CTYRAG 2 cut(s) 200, 306
SmoI CTYRAG 2 cut(s) 200, 306
Sse9I AATT 3 cut(s) 92, 316, 513
SsiI CCGC 2 cut(s) 239, 245
SspMI CTAG 1 cut(s) 242
StyD4I CCNGG 2 cut(s) 70, 352
StyI CCWWGG 1 cut(s) 216
TaiI ACGT 1 cut(s) 300
TaqI TCGA 2 cut(s) 21, 610
TasI AATT 3 cut(s) 92, 316, 513
TfiI GAWTC 3 cut(s) 249, 607, 625
Tru1I TTAA 2 cut(s) 201, 363
Tru9I TTAA 2 cut(s) 201, 363
TscAI CASTG 2 cut(s) 187, 443
TseI GCWGC 1 cut(s) 521
TspDTI ATGAA 5 cut(s) 29, 165, 256, 361, 490
TspRI CASTG 2 cut(s) 187, 443
Van91I CCANNNNNTGG 1 cut(s) 71
Vha464I CTTAAG 1 cut(s) 200
VpaK11BI GGWCC 2 cut(s) 220, 418
XapI RAATTY 1 cut(s) 513
XmiI GTMKAC 1 cut(s) 126
XspI CTAG 1 cut(s) 242
Zsp2I ATGCAT 1 cut(s) 467
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.