Rorug04G0252600

Vinorine synthase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
42546976 .. 42547847
872 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0252600.1

Sequence Viewer

Length: 228 bp
ATGAAATCAGGTGAGTCATTTGCCGGCTTTATCGAGGGTCTAATGGTGGTCATGTTAACAGCAGGAACAGATGACCCCTCATCTGGAACCATGGAATGGGCACTATCACTTTCCCTCAGCATTCAGCAATGCAGAAGCCTTGTAAAGGCCAAGAGTGAAACTAATGGGCAAATTGCGCAAAGCAGGCTAGTTGAGGAATTATACCTTGCCAAAGCTTCTCTATCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

75

Amino Acids

8.0

Weight (kDa)

4.86

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 177
AccB7I CCANNNNNTGG 1 cut(s) 96
AfiI CCNNNNNNNGG 3 cut(s) 83, 96, 145
AluBI AGCT 1 cut(s) 215
AluI AGCT 1 cut(s) 215
AoxI GGCC 1 cut(s) 147
AspLEI GCGC 1 cut(s) 178
AsuHPI GGTGA 1 cut(s) 23
BaeGI GKGCMC 1 cut(s) 103
BbvCI CCTCAGC 1 cut(s) 116
BfaI CTAG 1 cut(s) 188
BmiI GGNNCC 1 cut(s) 88
Bpu10I CCTNAGC 1 cut(s) 116
BsaJI CCNNGG 1 cut(s) 90
Bsc4I CCNNNNNNNGG 3 cut(s) 83, 96, 145
Bse118I RCCGGY 1 cut(s) 23
Bse3DI GCAATG 1 cut(s) 134
BseDI CCNNGG 1 cut(s) 90
BseLI CCNNNNNNNGG 3 cut(s) 83, 96, 145
BseMI GCAATG 1 cut(s) 134
BseMII CTCAG 1 cut(s) 130
BseSI GKGCMC 1 cut(s) 103
BshFI GGCC 1 cut(s) 149
BsiSI CCGG 1 cut(s) 24
BslI CCNNNNNNNGG 3 cut(s) 83, 96, 145
BsmI GAATGC 1 cut(s) 120
BsnI GGCC 1 cut(s) 149
Bsp1286I GDGCHC 1 cut(s) 103
Bsp19I CCATGG 1 cut(s) 90
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 1 cut(s) 129
BspLI GGNNCC 1 cut(s) 88
BsrDI GCAATG 1 cut(s) 134
BsrFI RCCGGY 1 cut(s) 23
BssAI RCCGGY 1 cut(s) 23
BssECI CCNNGG 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 90
BstC8I GCNNGC 2 cut(s) 25, 185
BstDEI CTNAG 2 cut(s) 116, 225
BstDSI CCRYGG 1 cut(s) 90
BstENI CCTNNNNNAGG 1 cut(s) 143
BstHHI GCGC 1 cut(s) 178
BstMWI GCNNNNNNNGC 2 cut(s) 175, 184
BstSLI GKGCMC 1 cut(s) 103
BsuRI GGCC 1 cut(s) 149
BtgI CCRYGG 1 cut(s) 90
Cac8I GCNNGC 2 cut(s) 25, 185
CfoI GCGC 1 cut(s) 178
Cfr10I RCCGGY 1 cut(s) 23
CviAII CATG 2 cut(s) 52, 91
CviJI RGCY 5 cut(s) 27, 138, 149, 187, 215
CviKI_1 RGCY 5 cut(s) 27, 138, 149, 187, 215
DdeI CTNAG 2 cut(s) 116, 225
Eco130I CCWWGG 1 cut(s) 90
EcoNI CCTNNNNNAGG 1 cut(s) 143
EcoT14I CCWWGG 1 cut(s) 90
ErhI CCWWGG 1 cut(s) 90
FaeI CATG 2 cut(s) 55, 94
FaiI YATR 3 cut(s) 53, 92, 202
FatI CATG 2 cut(s) 51, 90
FspBI CTAG 1 cut(s) 188
FspI TGCGCA 1 cut(s) 177
GlaI GCGC 1 cut(s) 177
HaeIII GGCC 1 cut(s) 149
HapII CCGG 1 cut(s) 24
HhaI GCGC 1 cut(s) 178
Hin1II CATG 2 cut(s) 55, 94
Hin6I GCGC 1 cut(s) 176
HinP1I GCGC 1 cut(s) 176
HincII GTYRAC 1 cut(s) 57
HindII GTYRAC 1 cut(s) 57
HindIII AAGCTT 1 cut(s) 213
HinfI GANTC 1 cut(s) 14
HpaI GTTAAC 1 cut(s) 57
HpaII CCGG 1 cut(s) 24
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 1 cut(s) 57
Hpy188III TCNNGA 1 cut(s) 84
Hpy8I GTNNAC 1 cut(s) 57
HpyCH4V TGCA 1 cut(s) 132
HpyF10VI GCNNNNNNNGC 2 cut(s) 175, 184
HpyF3I CTNAG 2 cut(s) 116, 225
Hsp92II CATG 2 cut(s) 55, 94
HspAI GCGC 1 cut(s) 176
KroI GCCGGC 1 cut(s) 23
KroNI GCCGGC 1 cut(s) 25
KspAI GTTAAC 1 cut(s) 57
LpnPI CCDG 4 cut(s) 37, 48, 69, 169
MaeI CTAG 1 cut(s) 188
MhlI GDGCHC 1 cut(s) 103
MluCI AATT 2 cut(s) 171, 197
MlyI GAGTC 1 cut(s) 23
MnlI CCTC 4 cut(s) 28, 88, 125, 187
MroNI GCCGGC 1 cut(s) 23
MseI TTAA 1 cut(s) 56
MspI CCGG 1 cut(s) 24
Mva1269I GAATGC 1 cut(s) 120
MwoI GCNNNNNNNGC 2 cut(s) 175, 184
NaeI GCCGGC 1 cut(s) 25
NcoI CCATGG 1 cut(s) 90
NgoMIV GCCGGC 1 cut(s) 23
NlaIII CATG 2 cut(s) 55, 94
NlaIV GGNNCC 1 cut(s) 88
NsbI TGCGCA 1 cut(s) 177
PctI GAATGC 1 cut(s) 120
PdiI GCCGGC 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 96
PleI GAGTC 1 cut(s) 22
PpsI GAGTC 1 cut(s) 22
PspN4I GGNNCC 1 cut(s) 88
SaqAI TTAA 1 cut(s) 56
SchI GAGTC 1 cut(s) 23
SduI GDGCHC 1 cut(s) 103
SetI ASST 3 cut(s) 13, 207, 217
Sse9I AATT 2 cut(s) 171, 197
SspMI CTAG 1 cut(s) 188
StyI CCWWGG 1 cut(s) 90
TaqI TCGA 1 cut(s) 33
TasI AATT 2 cut(s) 171, 197
Tru1I TTAA 1 cut(s) 56
Tru9I TTAA 1 cut(s) 56
TspDTI ATGAA 1 cut(s) 17
Van91I CCANNNNNTGG 1 cut(s) 96
XagI CCTNNNNNAGG 1 cut(s) 143
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.