Rw0G003000

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00098
OG0000622
Physical Location & Seq
Forward (+)
29376 .. 29941
566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G003000.1

Sequence Viewer

Length: 531 bp
ATGGCCAATACCAATAAGATTACAGGACCTCATGATGAGAAGTTGTATAGGATCGCCCATGCTGTTAACCTACGCCCAAGGTTTGATCCACCATTGCCACAACATTCTTTTGGAAACATTTACCGTGGTGCCACTGCATATGGTCGGGCTATGAGGGAAGTACGAGAAGAAATAAACAAGATTGACAATGACTGCGTCAAAGGACTACAGCAGGGTGCTGAGCAGTCTGGGCTCCCCTTCAATGAGAATACTGGTAGGCTAACCGAACTAGAACTGGTTACGTTGGGCTTCAGTAGCTATTGCAGGTTTCCAGTGTATGATAATGATTTCGGTTGGGGAAGGCCTGCGTGGGTGTTCTCAACACCATTAACCTTCAAGAACGTAGCAACTTTCATGGACACCAAAGAGGGTGATGGAATAGAGGTATACATCAGTTTGGAGGAGCAACTCATGGCTAAATTTGAAACTGATGCTGAGTTCTTGGCCCCTATGCGTCTCCAAGTGGGCGCTGAAGAGCCCTTTGGTTGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

176

Amino Acids

19.89

Weight (kDa)

5.02

Isoelectric Point (pI)

38.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 17 - 160 6.6e-21 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 294
AccB1I GGYRCC 1 cut(s) 128
AccI GTMKAC 1 cut(s) 426
AclWI GGATC 2 cut(s) 59, 80
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 458
AcuI CTGAAG 2 cut(s) 274, 531
AfaI GTAC 1 cut(s) 162
AgsI TTSAA 3 cut(s) 241, 376, 464
AjuI GAANNNNNNNTTGG 1 cut(s) 504
AluBI AGCT 1 cut(s) 297
AluI AGCT 1 cut(s) 297
Alw26I GTCTC 1 cut(s) 500
AlwI GGATC 2 cut(s) 59, 80
AoxI GGCC 3 cut(s) 3, 341, 483
ApoI RAATTY 1 cut(s) 458
AspLEI GCGC 1 cut(s) 509
AspS9I GGNCC 2 cut(s) 26, 484
AsuHPI GGTGA 1 cut(s) 422
AvaII GGWCC 1 cut(s) 26
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 128
BanII GRGCYC 2 cut(s) 234, 519
BccI CCATC 1 cut(s) 407
BcoDI GTCTC 1 cut(s) 500
BfaI CTAG 1 cut(s) 269
BfmI CTRYAG 1 cut(s) 206
BfoI RGCGCY 1 cut(s) 510
BfuAI ACCTGC 1 cut(s) 294
BlpI GCTNAGC 1 cut(s) 219
Bme18I GGWCC 1 cut(s) 26
BmgT120I GGNCC 2 cut(s) 26, 484
BmiI GGNNCC 3 cut(s) 130, 233, 486
BmsI GCATC 1 cut(s) 460
Bpu1102I GCTNAGC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 77, 124
Bse1I ACTGG 3 cut(s) 256, 279, 311
Bse3DI GCAATG 1 cut(s) 92
BseDI CCNNGG 2 cut(s) 77, 124
BseMI GCAATG 1 cut(s) 92
BseMII CTCAG 2 cut(s) 210, 465
BseNI ACTGG 3 cut(s) 256, 279, 311
BseRI GAGGAG 1 cut(s) 455
BshFI GGCC 3 cut(s) 5, 343, 485
BshNI GGYRCC 1 cut(s) 128
BsmAI GTCTC 1 cut(s) 500
BsmBI CGTCTC 1 cut(s) 500
BsnI GGCC 3 cut(s) 5, 343, 485
Bsp1286I GDGCHC 2 cut(s) 234, 519
Bsp143I GATC 2 cut(s) 51, 85
Bsp1720I GCTNAGC 1 cut(s) 219
BspANI GGCC 3 cut(s) 5, 343, 485
BspCNI CTCAG 2 cut(s) 211, 466
BspHI TCATGA 1 cut(s) 31
BspLI GGNNCC 3 cut(s) 130, 233, 486
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 2 cut(s) 59, 80
BspQI GCTCTTC 1 cut(s) 507
BspT107I GGYRCC 1 cut(s) 128
BsrDI GCAATG 1 cut(s) 92
BsrI ACTGG 3 cut(s) 256, 279, 311
BssECI CCNNGG 2 cut(s) 77, 124
BssMI GATC 2 cut(s) 51, 85
BssNAI GTATAC 1 cut(s) 427
BssT1I CCWWGG 1 cut(s) 77
Bst1107I GTATAC 1 cut(s) 427
Bst4CI ACNGT 1 cut(s) 125
Bst6I CTCTTC 1 cut(s) 507
BstC8I GCNNGC 1 cut(s) 345
BstDEI CTNAG 2 cut(s) 219, 474
BstDSI CCRYGG 1 cut(s) 124
BstH2I RGCGCY 1 cut(s) 510
BstHHI GCGC 1 cut(s) 509
BstKTI GATC 2 cut(s) 54, 88
BstMAI GTCTC 1 cut(s) 500
BstMBI GATC 2 cut(s) 51, 85
BstMWI GCNNNNNNNGC 2 cut(s) 229, 294
BstSFI CTRYAG 1 cut(s) 206
BstZ17I GTATAC 1 cut(s) 427
BsuRI GGCC 3 cut(s) 5, 343, 485
BtgI CCRYGG 1 cut(s) 124
BtsI GCAGTG 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 132, 318
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 345
CciI TCATGA 1 cut(s) 31
CfoI GCGC 1 cut(s) 509
Cfr13I GGNCC 2 cut(s) 26, 484
CseI GACGC 2 cut(s) 184, 482
Csp6I GTAC 1 cut(s) 161
CviAII CATG 4 cut(s) 32, 59, 394, 451
CviQI GTAC 1 cut(s) 161
DdeI CTNAG 2 cut(s) 219, 474
DpnI GATC 2 cut(s) 53, 87
DpnII GATC 2 cut(s) 51, 85
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 1 cut(s) 507
EarI CTCTTC 1 cut(s) 507
Eco130I CCWWGG 1 cut(s) 77
Eco147I AGGCCT 1 cut(s) 343
Eco24I GRGCYC 2 cut(s) 234, 519
Eco47I GGWCC 1 cut(s) 26
Eco57I CTGAAG 2 cut(s) 274, 531
EcoO109I RGGNCCY 1 cut(s) 26
EcoT14I CCWWGG 1 cut(s) 77
EcoT38I GRGCYC 2 cut(s) 234, 519
ErhI CCWWGG 1 cut(s) 77
Esp3I CGTCTC 1 cut(s) 500
FaeI CATG 4 cut(s) 35, 62, 397, 454
FatI CATG 4 cut(s) 31, 58, 393, 450
FauNDI CATATG 1 cut(s) 139
FblI GTMKAC 1 cut(s) 426
FriOI GRGCYC 2 cut(s) 234, 519
FspBI CTAG 1 cut(s) 269
GlaI GCGC 1 cut(s) 508
HaeII RGCGCY 1 cut(s) 510
HaeIII GGCC 3 cut(s) 5, 343, 485
HgaI GACGC 2 cut(s) 184, 482
HhaI GCGC 1 cut(s) 509
Hin1II CATG 4 cut(s) 35, 62, 397, 454
Hin6I GCGC 1 cut(s) 507
HinP1I GCGC 1 cut(s) 507
HincII GTYRAC 1 cut(s) 67
HindII GTYRAC 1 cut(s) 67
HpaI GTTAAC 1 cut(s) 67
HphI GGTGA 1 cut(s) 422
Hpy166II GTNNAC 2 cut(s) 67, 427
Hpy188III TCNNGA 2 cut(s) 32, 376
Hpy8I GTNNAC 2 cut(s) 67, 427
HpyAV CCTTC 3 cut(s) 247, 333, 382
HpyCH4III ACNGT 1 cut(s) 125
HpyCH4IV ACGT 2 cut(s) 281, 381
HpyCH4V TGCA 2 cut(s) 137, 303
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 294
HpyF3I CTNAG 2 cut(s) 219, 474
HpySE526I ACGT 2 cut(s) 281, 381
Hsp92II CATG 4 cut(s) 35, 62, 397, 454
HspAI GCGC 1 cut(s) 507
KspAI GTTAAC 1 cut(s) 67
Kzo9I GATC 2 cut(s) 51, 85
LguI GCTCTTC 1 cut(s) 507
LmnI GCTCC 2 cut(s) 237, 442
LpnPI CCDG 8 cut(s) 9, 197, 213, 237, 260, 289, 324, 357
LweI GCATC 1 cut(s) 460
MaeI CTAG 1 cut(s) 269
MaeII ACGT 2 cut(s) 281, 381
MaeIII GTNAC 1 cut(s) 277
MalI GATC 2 cut(s) 53, 87
MboI GATC 2 cut(s) 51, 85
MboII GAAGA 2 cut(s) 179, 524
MhlI GDGCHC 2 cut(s) 234, 519
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 1 cut(s) 458
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 5 cut(s) 39, 147, 400, 415, 433
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 3 cut(s) 66, 368, 529
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 2 cut(s) 229, 294
NdeI CATATG 1 cut(s) 139
NdeII GATC 2 cut(s) 51, 85
NlaIII CATG 4 cut(s) 35, 62, 397, 454
NlaIV GGNNCC 3 cut(s) 130, 233, 486
PagI TCATGA 1 cut(s) 31
PceI AGGCCT 1 cut(s) 343
PciSI GCTCTTC 1 cut(s) 507
PflFI GACNNNGTC 1 cut(s) 194
PpuMI RGGWCCY 1 cut(s) 26
Psp5II RGGWCCY 1 cut(s) 26
PspN4I GGNNCC 3 cut(s) 130, 233, 486
PspPI GGNCC 2 cut(s) 26, 484
PspPPI RGGWCCY 1 cut(s) 26
PsyI GACNNNGTC 1 cut(s) 194
RsaI GTAC 1 cut(s) 162
RsaNI GTAC 1 cut(s) 161
SapI GCTCTTC 1 cut(s) 507
SaqAI TTAA 3 cut(s) 66, 368, 529
Sau3AI GATC 2 cut(s) 51, 85
Sau96I GGNCC 2 cut(s) 26, 484
SduI GDGCHC 2 cut(s) 234, 519
SetI ASST 9 cut(s) 31, 72, 83, 284, 299, 308, 374, 384, 426
SfaNI GCATC 1 cut(s) 460
SfcI CTRYAG 1 cut(s) 206
SinI GGWCC 1 cut(s) 26
Sse9I AATT 1 cut(s) 458
SseBI AGGCCT 1 cut(s) 343
SspMI CTAG 1 cut(s) 269
StuI AGGCCT 1 cut(s) 343
StyI CCWWGG 1 cut(s) 77
TaaI ACNGT 1 cut(s) 125
TaiI ACGT 2 cut(s) 284, 384
TasI AATT 1 cut(s) 458
Tru1I TTAA 3 cut(s) 66, 368, 529
Tru9I TTAA 3 cut(s) 66, 368, 529
TscAI CASTG 2 cut(s) 139, 318
TspDTI ATGAA 1 cut(s) 382
TspRI CASTG 2 cut(s) 139, 318
Tth111I GACNNNGTC 1 cut(s) 194
VpaK11BI GGWCC 1 cut(s) 26
XapI RAATTY 1 cut(s) 458
XmiI GTMKAC 1 cut(s) 426
XspI CTAG 1 cut(s) 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.