Rw4G026920

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr4
OG0000622
Physical Location & Seq
Reverse (-)
53194449 .. 53196014
1566 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw4G026920.1

Sequence Viewer

Length: 1284 bp
ATGGGCATAATGAAGTTTGAAGCTGAAGTAATCTCCAAGCAGATTATCACGCCTTCTTCTCCAACCCCTGACCATCTTCGCCATTATCAGTTCTCATTTCTTGACCAAATATCTCCCCCGGTCTATAACCCTTTGCTTCTCTTTTATGAATTCAATGCCAAAACACAACCCAACATCACTGAAATATCCAACCACCTGAAGAACTCCTTAGCCAAAGTCTTAACCCTTTTCTACCCGCTAGCCGGACGACTCCAAGGCAACCAATACGTGGATTGCAACGACAATGGAATACCCTACCTTGAAGCTAAAGTGAACTGCAAACTCTCAGATGTTCTCGACAATCCAATACCCGGAGAACTCAACAAGCTCATGCCATTTGAGCTGGACGATGTGGCAAACAAATATGCCCTTGGCGTCCAGCTCAACATCTTTGAATGTGGTGGTTTTGCTATTGCTCAATGCCTTTCTCACAAGCTCGCAGATGGATTATCATACTTCACGTTCAGCAAAATTTGGGCCGCCACTGCCCGTGGTGAACCCAAAATAGCACATCCACAGTTCATTTCCGCCACACTATTCCCTCCCAAGAATTTAAGTGGATATGATGCGCGCACTGGTATCACAAGAAACAAAGTCACAAAAAGATTTGTGTTTAGTGCCTCTAACATAGAGGAGCTCAGAAAAGATCAAGCACATAAGGCCTTAACACGCCCTTCACGTGTTGAGGCCTTATCTTCTTTCATCTTGAGCCGATTTGTGGAGGCTACCAAAGATATTGGATCAGCTGACAAGTTTTACAGGGTGGTTCATGCTGTGAACTTGCGGCCAAGGTTCGACCCACCACTGCCGCACCATTCCTTTGGGAACCTTTACCGAGTAGCCATGACAGCTCCGCTACAAATAAGTTCCCGAGAACCATATCATGGTATACGAGAAGTGATAAGCAAGATCGACAATGAGTACGTGAGTAAACTACAGAAAGGTGATGAGCATTTGAGTTCCATCAAGACCTATGCTAAAAGTTTTGCTAAAGGCGAGCAGGTTACAATTAGCTTCAGTAGTTATTGCAGGTTTCCTCTGTACGATAACGATTTTGGTTGGGGGAGTCCTACGTGGGTGGGGTCGCCGGCACTGACGTTCAAGAATCTAGTGAACTTCATGGATACCAAAGAGGGTGGTGGGATTGAGGCATATATTAGCTTGGAGGAGGAAGTCATGACTAAGTTTGAGAGTGATGTGGATCTCTTAGCTTATGTGTCTCCAAGTGCGGTGCCGAACGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

427

Amino Acids

47.87

Weight (kDa)

7.17

Isoelectric Point (pI)

42.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 8 - 414 1.9e-75 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 1030, 1059
AccB1I GGYRCC 1 cut(s) 1270
AccB7I CCANNNNNTGG 2 cut(s) 268, 923
AccI GTMKAC 1 cut(s) 928
AccII CGCG 1 cut(s) 610
AciI CCGC 7 cut(s) 236, 519, 567, 823, 848, 893, 1268
AclWI GGATC 2 cut(s) 787, 1248
AcoI YGGCCR 1 cut(s) 824
AcsI RAATTY 3 cut(s) 149, 510, 589
AcuI CTGAAG 3 cut(s) 45, 218, 1039
AcvI CACGTG 1 cut(s) 719
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 2 cut(s) 962, 1082
AfiI CCNNNNNNNGG 5 cut(s) 242, 268, 350, 757, 923
AflIII ACRYGT 1 cut(s) 718
AgsI TTSAA 5 cut(s) 20, 154, 302, 434, 1141
Alw21I GWGCWC 1 cut(s) 678
Alw26I GTCTC 1 cut(s) 1263
AlwI GGATC 2 cut(s) 787, 1248
Ama87I CYCGRG 1 cut(s) 909
AoxI GGCC 4 cut(s) 516, 699, 726, 824
ApoI RAATTY 3 cut(s) 149, 510, 589
AspLEI GCGC 2 cut(s) 610, 612
AspS9I GGNCC 1 cut(s) 516
AsuC2I CCSGG 2 cut(s) 119, 351
AsuHPI GGTGA 2 cut(s) 545, 995
AsuNHI GCTAGC 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 909
BanI GGYRCC 1 cut(s) 1270
BanII GRGCYC 1 cut(s) 678
BbrPI CACGTG 1 cut(s) 719
Bbv12I GWGCWC 1 cut(s) 678
BccI CCATC 3 cut(s) 81, 476, 1010
BciVI GTATCC 1 cut(s) 1156
BcnI CCSGG 2 cut(s) 119, 351
BcoDI GTCTC 1 cut(s) 1263
BfaI CTAG 2 cut(s) 239, 1148
BfmI CTRYAG 1 cut(s) 974
BfuAI ACCTGC 2 cut(s) 1030, 1059
BfuI GTATCC 1 cut(s) 1156
BisI GCNGC 3 cut(s) 519, 824, 848
BlsI GCNGC 3 cut(s) 520, 825, 849
Bme1390I CCNGG 2 cut(s) 119, 351
BmeT110I CYCGRG 1 cut(s) 909
BmgT120I GGNCC 1 cut(s) 516
BmiI GGNNCC 2 cut(s) 866, 1272
BmrFI CCNGG 2 cut(s) 119, 351
BmsI GCATC 1 cut(s) 595
BmtI GCTAGC 1 cut(s) 242
Bpu10I CCTNAGC 1 cut(s) 208
BpuEI CTTGAG 1 cut(s) 766
BpuMI CCSGG 2 cut(s) 119, 351
BsaAI YACGTR 4 cut(s) 268, 719, 964, 1113
BsaBI GATNNNNATC 1 cut(s) 1239
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 5 cut(s) 117, 253, 409, 529, 827
Bsc4I CCNNNNNNNGG 5 cut(s) 242, 268, 350, 757, 923
Bse118I RCCGGY 1 cut(s) 1126
Bse1I ACTGG 1 cut(s) 619
Bse8I GATNNNNATC 1 cut(s) 1239
BseDI CCNNGG 5 cut(s) 117, 253, 409, 529, 827
BseGI GGATG 1 cut(s) 550
BseJI GATNNNNATC 1 cut(s) 1239
BseLI CCNNNNNNNGG 5 cut(s) 242, 268, 350, 757, 923
BseMII CTCAG 2 cut(s) 339, 691
BseNI ACTGG 1 cut(s) 619
BsePI GCGCGC 1 cut(s) 608
BseRI GAGGAG 2 cut(s) 686, 1220
Bsh1236I CGCG 1 cut(s) 610
BshFI GGCC 4 cut(s) 518, 701, 728, 826
BshNI GGYRCC 1 cut(s) 1270
BsiHKAI GWGCWC 1 cut(s) 678
BsiHKCI CYCGRG 1 cut(s) 909
BsiSI CCGG 4 cut(s) 119, 243, 351, 1127
BslI CCNNNNNNNGG 5 cut(s) 242, 268, 350, 757, 923
BsmAI GTCTC 1 cut(s) 1263
BsnI GGCC 4 cut(s) 518, 701, 728, 826
BsoBI CYCGRG 1 cut(s) 909
Bsp1286I GDGCHC 1 cut(s) 678
Bsp143I GATC 4 cut(s) 685, 779, 948, 1240
BspACI CCGC 7 cut(s) 236, 519, 567, 823, 848, 893, 1268
BspANI GGCC 4 cut(s) 518, 701, 728, 826
BspCNI CTCAG 2 cut(s) 338, 690
BspFNI CGCG 1 cut(s) 610
BspHI TCATGA 1 cut(s) 1215
BspLI GGNNCC 2 cut(s) 866, 1272
BspMI ACCTGC 2 cut(s) 1030, 1059
BspOI GCTAGC 1 cut(s) 242
BspPI GGATC 2 cut(s) 787, 1248
BspT107I GGYRCC 1 cut(s) 1270
BsrFI RCCGGY 1 cut(s) 1126
BsrI ACTGG 1 cut(s) 619
BssAI RCCGGY 1 cut(s) 1126
BssECI CCNNGG 5 cut(s) 117, 253, 409, 529, 827
BssHII GCGCGC 1 cut(s) 608
BssMI GATC 4 cut(s) 685, 779, 948, 1240
BssNAI GTATAC 1 cut(s) 929
BssNI GRCGYC 1 cut(s) 414
BssT1I CCWWGG 3 cut(s) 253, 409, 827
Bst1107I GTATAC 1 cut(s) 929
Bst4CI ACNGT 1 cut(s) 558
BstACI GRCGYC 1 cut(s) 414
BstBAI YACGTR 4 cut(s) 268, 719, 964, 1113
BstC8I GCNNGC 5 cut(s) 240, 477, 610, 1037, 1128
BstDEI CTNAG 5 cut(s) 208, 325, 677, 1221, 1246
BstDSI CCRYGG 1 cut(s) 529
BstF5I GGATG 1 cut(s) 550
BstFNI CGCG 1 cut(s) 610
BstHHI GCGC 2 cut(s) 610, 612
BstKTI GATC 4 cut(s) 688, 782, 951, 1243
BstMAI GTCTC 1 cut(s) 1263
BstMBI GATC 4 cut(s) 685, 779, 948, 1240
BstMWI GCNNNNNNNGC 4 cut(s) 379, 524, 698, 887
BstSCI CCNGG 2 cut(s) 117, 349
BstSFI CTRYAG 1 cut(s) 974
BstUI CGCG 1 cut(s) 610
BstX2I RGATCY 1 cut(s) 1240
BstXI CCANNNNNNTGG 1 cut(s) 860
BstYI RGATCY 1 cut(s) 1240
BstZ17I GTATAC 1 cut(s) 929
BsuI GTATCC 1 cut(s) 1156
BsuRI GGCC 4 cut(s) 518, 701, 728, 826
BtgI CCRYGG 1 cut(s) 529
BtsCI GGATG 1 cut(s) 550
BtsI GCAGTG 2 cut(s) 522, 842
BtsIMutI CAGTG 5 cut(s) 177, 522, 612, 842, 1130
BveI ACCTGC 2 cut(s) 1030, 1059
Cac8I GCNNGC 5 cut(s) 240, 477, 610, 1037, 1128
CciI TCATGA 1 cut(s) 1215
CfoI GCGC 2 cut(s) 610, 612
Cfr10I RCCGGY 1 cut(s) 1126
Cfr13I GGNCC 1 cut(s) 516
CseI GACGC 1 cut(s) 403
Csp6I GTAC 2 cut(s) 961, 1081
CspCI CAANNNNNGTGG 2 cut(s) 1156, 1191
CviAII CATG 6 cut(s) 370, 809, 883, 923, 1159, 1216
CviQI GTAC 2 cut(s) 961, 1081
DdeI CTNAG 5 cut(s) 208, 325, 677, 1221, 1246
DpnI GATC 4 cut(s) 687, 781, 950, 1242
DpnII GATC 4 cut(s) 685, 779, 948, 1240
EaeI YGGCCR 1 cut(s) 824
EciI GGCGGA 1 cut(s) 556
Ecl136II GAGCTC 1 cut(s) 676
Eco130I CCWWGG 3 cut(s) 253, 409, 827
Eco147I AGGCCT 2 cut(s) 701, 728
Eco24I GRGCYC 1 cut(s) 678
Eco53kI GAGCTC 1 cut(s) 676
Eco57I CTGAAG 3 cut(s) 45, 218, 1039
Eco72I CACGTG 1 cut(s) 719
Eco88I CYCGRG 1 cut(s) 909
EcoICRI GAGCTC 1 cut(s) 676
EcoRI GAATTC 1 cut(s) 149
EcoT14I CCWWGG 3 cut(s) 253, 409, 827
EcoT38I GRGCYC 1 cut(s) 678
ErhI CCWWGG 3 cut(s) 253, 409, 827
FaeI CATG 6 cut(s) 373, 812, 886, 926, 1162, 1219
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 6 cut(s) 369, 808, 882, 922, 1158, 1215
FauI CCCGC 1 cut(s) 243
FblI GTMKAC 1 cut(s) 928
Fnu4HI GCNGC 3 cut(s) 519, 824, 848
FokI GGATG 1 cut(s) 537
FriOI GRGCYC 1 cut(s) 678
Fsp4HI GCNGC 3 cut(s) 519, 824, 848
FspBI CTAG 2 cut(s) 239, 1148
GlaI GCGC 2 cut(s) 609, 611
GluI GCNGC 3 cut(s) 519, 824, 848
HaeIII GGCC 4 cut(s) 518, 701, 728, 826
HapII CCGG 4 cut(s) 119, 243, 351, 1127
HgaI GACGC 1 cut(s) 403
HhaI GCGC 2 cut(s) 610, 612
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 6 cut(s) 373, 812, 886, 926, 1162, 1219
Hin6I GCGC 2 cut(s) 608, 610
HinP1I GCGC 2 cut(s) 608, 610
HinfI GANTC 3 cut(s) 249, 1105, 1144
HpaII CCGG 4 cut(s) 119, 243, 351, 1127
HphI GGTGA 2 cut(s) 545, 995
Hpy166II GTNNAC 6 cut(s) 313, 536, 817, 929, 971, 1153
Hpy188I TCNGA 2 cut(s) 328, 680
Hpy188III TCNNGA 7 cut(s) 101, 335, 745, 909, 1006, 1141, 1216
Hpy8I GTNNAC 6 cut(s) 313, 536, 817, 929, 971, 1153
HpyAV CCTTC 2 cut(s) 63, 723
HpyCH4III ACNGT 1 cut(s) 558
HpyCH4IV ACGT 7 cut(s) 267, 500, 718, 963, 1112, 1136, 1278
HpyCH4V TGCA 3 cut(s) 276, 318, 1068
HpyF10VI GCNNNNNNNGC 4 cut(s) 379, 524, 698, 887
HpyF3I CTNAG 5 cut(s) 208, 325, 677, 1221, 1246
HpySE526I ACGT 7 cut(s) 267, 500, 718, 963, 1112, 1136, 1278
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 6 cut(s) 373, 812, 886, 926, 1162, 1219
HspAI GCGC 2 cut(s) 608, 610
KroI GCCGGC 1 cut(s) 1126
KroNI GCCGGC 1 cut(s) 1128
Kzo9I GATC 4 cut(s) 685, 779, 948, 1240
LmnI GCTCC 2 cut(s) 673, 895
LweI GCATC 1 cut(s) 595
MaeI CTAG 2 cut(s) 239, 1148
MaeII ACGT 7 cut(s) 267, 500, 718, 963, 1112, 1136, 1278
MaeIII GTNAC 2 cut(s) 634, 1042
MalI GATC 4 cut(s) 687, 781, 950, 1242
MboI GATC 4 cut(s) 685, 779, 948, 1240
MboII GAAGA 4 cut(s) 48, 68, 211, 726
MflI RGATCY 1 cut(s) 1240
MhlI GDGCHC 1 cut(s) 678
MluCI AATT 4 cut(s) 149, 510, 589, 1047
MlyI GAGTC 2 cut(s) 243, 1114
MmeI TCCRAC 2 cut(s) 86, 213
MroNI GCCGGC 1 cut(s) 1126
MseI TTAA 3 cut(s) 221, 593, 704
MspA1I CMGCKG 1 cut(s) 785
MspI CCGG 4 cut(s) 119, 243, 351, 1127
MspR9I CCNGG 2 cut(s) 119, 351
MvnI CGCG 1 cut(s) 610
MwoI GCNNNNNNNGC 4 cut(s) 379, 524, 698, 887
NaeI GCCGGC 1 cut(s) 1128
NciI CCSGG 2 cut(s) 119, 351
NdeII GATC 4 cut(s) 685, 779, 948, 1240
NgoMIV GCCGGC 1 cut(s) 1126
NheI GCTAGC 1 cut(s) 238
NlaIII CATG 6 cut(s) 373, 812, 886, 926, 1162, 1219
NlaIV GGNNCC 2 cut(s) 866, 1272
NmuCI GTSAC 1 cut(s) 634
PagI TCATGA 1 cut(s) 1215
PauI GCGCGC 1 cut(s) 608
PceI AGGCCT 2 cut(s) 701, 728
PcsI WCGNNNNNNNCGW 1 cut(s) 715
PdiI GCCGGC 1 cut(s) 1128
PfeI GAWTC 1 cut(s) 1144
PflMI CCANNNNNTGG 2 cut(s) 268, 923
PkrI GCNGC 3 cut(s) 520, 825, 849
PleI GAGTC 2 cut(s) 243, 1113
PmaCI CACGTG 1 cut(s) 719
PmlI CACGTG 1 cut(s) 719
PpsI GAGTC 2 cut(s) 243, 1113
Ppu21I YACGTR 4 cut(s) 268, 719, 964, 1113
Psp124BI GAGCTC 1 cut(s) 678
PspCI CACGTG 1 cut(s) 719
PspN4I GGNNCC 2 cut(s) 866, 1272
PspPI GGNCC 1 cut(s) 516
PsuI RGATCY 1 cut(s) 1240
PteI GCGCGC 1 cut(s) 608
PvuII CAGCTG 1 cut(s) 785
RsaI GTAC 2 cut(s) 962, 1082
RsaNI GTAC 2 cut(s) 961, 1081
SacI GAGCTC 1 cut(s) 678
SaqAI TTAA 3 cut(s) 221, 593, 704
SatI GCNGC 3 cut(s) 519, 824, 848
Sau3AI GATC 4 cut(s) 685, 779, 948, 1240
Sau96I GGNCC 1 cut(s) 516
SchI GAGTC 2 cut(s) 243, 1114
ScrFI CCNGG 2 cut(s) 119, 351
SduI GDGCHC 1 cut(s) 678
SfaNI GCATC 1 cut(s) 595
SfcI CTRYAG 1 cut(s) 974
SmlI CTYRAG 1 cut(s) 745
SmoI CTYRAG 1 cut(s) 745
Sse9I AATT 4 cut(s) 149, 510, 589, 1047
SseBI AGGCCT 2 cut(s) 701, 728
SsiI CCGC 7 cut(s) 236, 519, 567, 823, 848, 893, 1268
SspMI CTAG 2 cut(s) 239, 1148
SstI GAGCTC 1 cut(s) 678
StuI AGGCCT 2 cut(s) 701, 728
StyD4I CCNGG 2 cut(s) 117, 349
StyI CCWWGG 3 cut(s) 253, 409, 827
TaaI ACNGT 1 cut(s) 558
TaiI ACGT 7 cut(s) 270, 503, 721, 966, 1115, 1139, 1281
TaqI TCGA 3 cut(s) 336, 834, 951
TasI AATT 4 cut(s) 149, 510, 589, 1047
TauI GCSGC 3 cut(s) 521, 826, 850
TfiI GAWTC 1 cut(s) 1144
Tru1I TTAA 3 cut(s) 221, 593, 704
Tru9I TTAA 3 cut(s) 221, 593, 704
TscAI CASTG 5 cut(s) 184, 529, 619, 849, 1137
TseFI GTSAC 1 cut(s) 634
Tsp45I GTSAC 1 cut(s) 634
TspDTI ATGAA 6 cut(s) 26, 162, 550, 730, 797, 1147
TspRI CASTG 5 cut(s) 184, 529, 619, 849, 1137
Van91I CCANNNNNTGG 2 cut(s) 268, 923
XapI RAATTY 3 cut(s) 149, 510, 589
XmiI GTMKAC 1 cut(s) 928
XspI CTAG 2 cut(s) 239, 1148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.