Rroxscaffold_4G00317310

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000622
Physical Location & Seq
Reverse (-)
42543637 .. 42544995
1359 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00317310.1

Sequence Viewer

Length: 621 bp
ATGTGGCAAACAAATCTGCTCTGCTCAAGCTCAACATCTTTGAATGTGGTGGTTTTTGCTACTGCTCAATGCCTCTCTCACAAGCTCGCAGATGGGTTATCATACTTCACGTTCAGCAAAATTTGGGCCGCCACTGCCCGTTGCGAACCCCAAATAGCACATCCACGTGGTATGGTTCATGCTGTGAACTTGCTGCCAAGGTTCGACCCACCACTGCCGCACCATTCCTTTGGGAACCTTTACCGAGTCGCCATGACAGCTCCATTACAAATAAGTTCCAGAGAACCATACCATGGTACACGAGAAGTGATAAGCAAAATCGACAATGAGTACGTTAGAAAACTACAGAAAGGTGATGAGCATTTGAGTTCCATCAAGACCTATGCTAAAAGTTTTGCTAAAGGCGAGCAGGTTTCCTTTGTACGATATCGATTTTGGTTGGGGGAGACCTACATGGTTGGGGTGCTGGCACAAACGTTCAAGAACCTGGTGACCTTCATGGATACCAAAGAGGGTGGTGGGATTGAGGCTTATATTAGCTTGAAGGAGGAAGTCATGACTAAGTTAGAGAGCGATGTGGAGCTTTTAGCTTATGTGTCTCCAAGTGCGGTGCTGAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

206

Amino Acids

23.16

Weight (kDa)

8.38

Isoelectric Point (pI)

27.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 57 - 195 6.3e-06 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 400
AccB7I CCANNNNNTGG 1 cut(s) 293
AciI CCGC 3 cut(s) 129, 218, 608
AclI AACGTT 1 cut(s) 476
AcsI RAATTY 1 cut(s) 120
AcvI CACGTG 1 cut(s) 167
AfaI GTAC 3 cut(s) 298, 332, 423
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 3 cut(s) 43, 481, 544
AjnI CCWGG 1 cut(s) 486
AluBI AGCT 6 cut(s) 30, 85, 260, 540, 583, 590
AluI AGCT 6 cut(s) 30, 85, 260, 540, 583, 590
Alw26I GTCTC 2 cut(s) 440, 603
AoxI GGCC 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 193
ApoI RAATTY 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 126
AsuHPI GGTGA 2 cut(s) 365, 502
BauI CACGAG 1 cut(s) 300
BbrPI CACGTG 1 cut(s) 167
BbvI GCAGC 1 cut(s) 180
BccI CCATC 2 cut(s) 86, 380
BciT130I CCWGG 1 cut(s) 488
BciVI GTATCC 1 cut(s) 496
BcoDI GTCTC 2 cut(s) 440, 603
BfmI CTRYAG 1 cut(s) 344
BfuAI ACCTGC 1 cut(s) 400
BfuI GTATCC 1 cut(s) 496
BisI GCNGC 3 cut(s) 129, 194, 218
BlsI GCNGC 3 cut(s) 130, 195, 219
Bme1390I CCNGG 1 cut(s) 488
BmgT120I GGNCC 1 cut(s) 126
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 488
BpuEI CTTGAG 1 cut(s) 10
Bsa29I ATCGAT 1 cut(s) 430
BsaAI YACGTR 1 cut(s) 167
BsaI GGTCTC 1 cut(s) 440
BsaJI CCNNGG 2 cut(s) 197, 292
Bsc4I CCNNNNNNNGG 1 cut(s) 293
BseBI CCWGG 1 cut(s) 488
BseCI ATCGAT 1 cut(s) 430
BseDI CCNNGG 2 cut(s) 197, 292
BseGI GGATG 1 cut(s) 160
BseLI CCNNNNNNNGG 1 cut(s) 293
BseXI GCAGC 1 cut(s) 180
BshFI GGCC 1 cut(s) 128
BshVI ATCGAT 1 cut(s) 430
BslI CCNNNNNNNGG 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 440, 603
BsnI GGCC 1 cut(s) 128
Bso31I GGTCTC 1 cut(s) 440
Bsp19I CCATGG 1 cut(s) 292
BspACI CCGC 3 cut(s) 129, 218, 608
BspANI GGCC 1 cut(s) 128
BspDI ATCGAT 1 cut(s) 430
BspHI TCATGA 1 cut(s) 555
BspLI GGNNCC 1 cut(s) 236
BspMI ACCTGC 1 cut(s) 400
BspTNI GGTCTC 1 cut(s) 440
BssECI CCNNGG 2 cut(s) 197, 292
BssSI CACGAG 1 cut(s) 300
BssT1I CCWWGG 2 cut(s) 197, 292
Bst2BI CACGAG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 488
BstBAI YACGTR 1 cut(s) 167
BstC8I GCNNGC 3 cut(s) 87, 407, 468
BstDEI CTNAG 1 cut(s) 561
BstDSI CCRYGG 1 cut(s) 292
BstEII GGTNACC 1 cut(s) 490
BstF5I GGATG 1 cut(s) 160
BstMAI GTCTC 2 cut(s) 440, 603
BstMWI GCNNNNNNNGC 2 cut(s) 134, 257
BstNI CCWGG 1 cut(s) 488
BstPI GGTNACC 1 cut(s) 490
BstSCI CCNGG 1 cut(s) 486
BstSFI CTRYAG 1 cut(s) 344
BstV1I GCAGC 1 cut(s) 180
BstXI CCANNNNNNTGG 1 cut(s) 230
Bsu15I ATCGAT 1 cut(s) 430
BsuI GTATCC 1 cut(s) 496
BsuRI GGCC 1 cut(s) 128
BsuTUI ATCGAT 1 cut(s) 430
BtgI CCRYGG 1 cut(s) 292
BtgZI GCGATG 1 cut(s) 588
BtsCI GGATG 1 cut(s) 160
BtsI GCAGTG 2 cut(s) 132, 212
BtsIMutI CAGTG 2 cut(s) 132, 212
BveI ACCTGC 1 cut(s) 400
Cac8I GCNNGC 3 cut(s) 87, 407, 468
CciI TCATGA 1 cut(s) 555
Cfr13I GGNCC 1 cut(s) 126
ClaI ATCGAT 1 cut(s) 430
CsiI ACCWGGT 1 cut(s) 486
Csp6I GTAC 3 cut(s) 297, 331, 422
CspCI CAANNNNNGTGG 2 cut(s) 496, 531
CviAII CATG 6 cut(s) 179, 253, 293, 454, 499, 556
CviJI RGCY 8 cut(s) 30, 85, 128, 260, 530, 540, 583, 590
CviKI_1 RGCY 8 cut(s) 30, 85, 128, 260, 530, 540, 583, 590
CviQI GTAC 3 cut(s) 297, 331, 422
DdeI CTNAG 1 cut(s) 561
Eco130I CCWWGG 2 cut(s) 197, 292
Eco31I GGTCTC 1 cut(s) 440
Eco32I GATATC 1 cut(s) 428
Eco72I CACGTG 1 cut(s) 167
Eco91I GGTNACC 1 cut(s) 490
EcoO65I GGTNACC 1 cut(s) 490
EcoRII CCWGG 1 cut(s) 486
EcoRV GATATC 1 cut(s) 428
EcoT14I CCWWGG 2 cut(s) 197, 292
ErhI CCWWGG 2 cut(s) 197, 292
FaeI CATG 6 cut(s) 182, 256, 296, 457, 502, 559
FatI CATG 6 cut(s) 178, 252, 292, 453, 498, 555
Fnu4HI GCNGC 3 cut(s) 129, 194, 218
FokI GGATG 1 cut(s) 147
Fsp4HI GCNGC 3 cut(s) 129, 194, 218
GluI GCNGC 3 cut(s) 129, 194, 218
HaeIII GGCC 1 cut(s) 128
Hin1II CATG 6 cut(s) 182, 256, 296, 457, 502, 559
HinfI GANTC 1 cut(s) 246
HphI GGTGA 2 cut(s) 365, 502
Hpy166II GTNNAC 2 cut(s) 187, 299
Hpy188III TCNNGA 4 cut(s) 279, 376, 481, 556
Hpy8I GTNNAC 2 cut(s) 187, 299
HpyAV CCTTC 2 cut(s) 505, 538
HpyCH4IV ACGT 4 cut(s) 110, 166, 333, 476
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 257
HpyF3I CTNAG 1 cut(s) 561
HpySE526I ACGT 4 cut(s) 110, 166, 333, 476
Hsp92II CATG 6 cut(s) 182, 256, 296, 457, 502, 559
LmnI GCTCC 2 cut(s) 265, 580
LpnPI CCDG 5 cut(s) 292, 395, 452, 473, 500
Lsp1109I GCAGC 1 cut(s) 180
MabI ACCWGGT 1 cut(s) 486
MaeII ACGT 4 cut(s) 110, 166, 333, 476
MaeIII GTNAC 1 cut(s) 490
MluCI AATT 1 cut(s) 120
MlyI GAGTC 1 cut(s) 255
MnlI CCTC 4 cut(s) 83, 505, 520, 541
MslI CAYNNNNRTG 1 cut(s) 165
MspR9I CCNGG 1 cut(s) 488
MvaI CCWGG 1 cut(s) 488
MwoI GCNNNNNNNGC 2 cut(s) 134, 257
NcoI CCATGG 1 cut(s) 292
NlaIII CATG 6 cut(s) 182, 256, 296, 457, 502, 559
NlaIV GGNNCC 1 cut(s) 236
NmuCI GTSAC 1 cut(s) 490
PagI TCATGA 1 cut(s) 555
PflMI CCANNNNNTGG 1 cut(s) 293
PkrI GCNGC 3 cut(s) 130, 195, 219
PleI GAGTC 1 cut(s) 254
PmaCI CACGTG 1 cut(s) 167
PmlI CACGTG 1 cut(s) 167
PpsI GAGTC 1 cut(s) 254
Ppu21I YACGTR 1 cut(s) 167
Psp1406I AACGTT 1 cut(s) 476
Psp6I CCWGG 1 cut(s) 486
PspCI CACGTG 1 cut(s) 167
PspEI GGTNACC 1 cut(s) 490
PspGI CCWGG 1 cut(s) 486
PspN4I GGNNCC 1 cut(s) 236
PspPI GGNCC 1 cut(s) 126
RsaI GTAC 3 cut(s) 298, 332, 423
RsaNI GTAC 3 cut(s) 297, 331, 422
RseI CAYNNNNRTG 1 cut(s) 165
SatI GCNGC 3 cut(s) 129, 194, 218
Sau96I GGNCC 1 cut(s) 126
SchI GAGTC 1 cut(s) 255
ScrFI CCNGG 1 cut(s) 488
SexAI ACCWGGT 1 cut(s) 486
SfcI CTRYAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 165
SmlI CTYRAG 1 cut(s) 25
SmoI CTYRAG 1 cut(s) 25
Sse9I AATT 1 cut(s) 120
SsiI CCGC 3 cut(s) 129, 218, 608
StyD4I CCNGG 1 cut(s) 486
StyI CCWWGG 2 cut(s) 197, 292
TaiI ACGT 4 cut(s) 113, 169, 336, 479
TaqI TCGA 3 cut(s) 204, 321, 430
TasI AATT 1 cut(s) 120
TauI GCSGC 2 cut(s) 131, 220
TscAI CASTG 2 cut(s) 139, 219
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 1 cut(s) 193
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 2 cut(s) 167, 487
TspRI CASTG 2 cut(s) 139, 219
Van91I CCANNNNNTGG 1 cut(s) 293
XapI RAATTY 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.