Rmu_sc0031439.1_g000001

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031439.1
OG0000622
Physical Location & Seq
Reverse (-)
1 .. 464
464 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031439.1_g000001.1.cds

Sequence Viewer

Length: 290 bp
ctgaagaactccttagccaaagttttaacccttttctacccgctagccggacgactccaaggcaaccagtacgtggattgcaacgatgatggaataccctaccttgaagctaaagtgaactgcaaactctcagatgttctcgacaatccaatacccggagaactcaacaagctcatgccatttgagctggacgatgtggcaaacaaatatgcccttggcgtccagctcaacatctttgaatgtggtggttttgctattgctcaatgcctttctcacaagctcgcagatgg
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

97

Amino Acids

10.59

Weight (kDa)

4.68

Isoelectric Point (pI)

32.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 73
AciI CCGC 1 cut(s) 41
AcuI CTGAAG 1 cut(s) 23
AcyI GRCGYC 1 cut(s) 219
AfaI GTAC 1 cut(s) 71
AfiI CCNNNNNNNGG 3 cut(s) 47, 73, 155
AgsI TTSAA 2 cut(s) 107, 239
AluBI AGCT 5 cut(s) 110, 172, 187, 226, 280
AluI AGCT 5 cut(s) 110, 172, 187, 226, 280
AsuC2I CCSGG 1 cut(s) 156
AsuNHI GCTAGC 1 cut(s) 43
BccI CCATC 2 cut(s) 83, 281
BcnI CCSGG 1 cut(s) 156
BfaI CTAG 1 cut(s) 44
Bme1390I CCNGG 1 cut(s) 156
BmrFI CCNGG 1 cut(s) 156
BmtI GCTAGC 1 cut(s) 47
Bpu10I CCTNAGC 1 cut(s) 13
BpuMI CCSGG 1 cut(s) 156
BsaAI YACGTR 1 cut(s) 73
BsaHI GRCGYC 1 cut(s) 219
BsaJI CCNNGG 2 cut(s) 58, 214
Bsc4I CCNNNNNNNGG 3 cut(s) 47, 73, 155
Bse1I ACTGG 1 cut(s) 67
BseDI CCNNGG 2 cut(s) 58, 214
BseLI CCNNNNNNNGG 3 cut(s) 47, 73, 155
BseMII CTCAG 1 cut(s) 144
BseNI ACTGG 1 cut(s) 67
BsiSI CCGG 2 cut(s) 48, 156
BslI CCNNNNNNNGG 3 cut(s) 47, 73, 155
BspACI CCGC 1 cut(s) 41
BspCNI CTCAG 1 cut(s) 143
BspOI GCTAGC 1 cut(s) 47
BsrI ACTGG 1 cut(s) 67
BssECI CCNNGG 2 cut(s) 58, 214
BssNI GRCGYC 1 cut(s) 219
BssT1I CCWWGG 2 cut(s) 58, 214
BstACI GRCGYC 1 cut(s) 219
BstBAI YACGTR 1 cut(s) 73
BstC8I GCNNGC 2 cut(s) 45, 282
BstDEI CTNAG 2 cut(s) 13, 130
BstMWI GCNNNNNNNGC 1 cut(s) 184
BstSCI CCNGG 1 cut(s) 154
Cac8I GCNNGC 2 cut(s) 45, 282
CseI GACGC 1 cut(s) 208
Csp6I GTAC 1 cut(s) 70
CviAII CATG 1 cut(s) 175
CviJI RGCY 7 cut(s) 17, 47, 110, 172, 187, 226, 280
CviKI_1 RGCY 7 cut(s) 17, 47, 110, 172, 187, 226, 280
CviQI GTAC 1 cut(s) 70
DdeI CTNAG 2 cut(s) 13, 130
Eco130I CCWWGG 2 cut(s) 58, 214
Eco57I CTGAAG 1 cut(s) 23
EcoT14I CCWWGG 2 cut(s) 58, 214
ErhI CCWWGG 2 cut(s) 58, 214
FaeI CATG 1 cut(s) 178
FaiI YATR 2 cut(s) 176, 210
FalI AAGNNNNNCTT 1 cut(s) 28
FatI CATG 1 cut(s) 174
FauI CCCGC 1 cut(s) 48
FspBI CTAG 1 cut(s) 44
HapII CCGG 2 cut(s) 48, 156
HgaI GACGC 1 cut(s) 208
Hin1I GRCGYC 1 cut(s) 219
Hin1II CATG 1 cut(s) 178
HinfI GANTC 1 cut(s) 54
HpaII CCGG 2 cut(s) 48, 156
Hpy166II GTNNAC 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 133
Hpy188III TCNNGA 1 cut(s) 140
Hpy8I GTNNAC 1 cut(s) 118
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 81, 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 184
HpyF3I CTNAG 2 cut(s) 13, 130
HpySE526I ACGT 1 cut(s) 72
Hsp92I GRCGYC 1 cut(s) 219
Hsp92II CATG 1 cut(s) 178
LpnPI CCDG 5 cut(s) 61, 80, 169, 173, 236
MaeI CTAG 1 cut(s) 44
MaeII ACGT 1 cut(s) 72
MboII GAAGA 1 cut(s) 16
MlyI GAGTC 1 cut(s) 48
MseI TTAA 1 cut(s) 26
MspI CCGG 2 cut(s) 48, 156
MspR9I CCNGG 1 cut(s) 156
MwoI GCNNNNNNNGC 1 cut(s) 184
NciI CCSGG 1 cut(s) 156
NheI GCTAGC 1 cut(s) 43
NlaIII CATG 1 cut(s) 178
PflMI CCANNNNNTGG 1 cut(s) 73
PleI GAGTC 1 cut(s) 48
PpsI GAGTC 1 cut(s) 48
Ppu21I YACGTR 1 cut(s) 73
RsaI GTAC 1 cut(s) 71
RsaNI GTAC 1 cut(s) 70
SaqAI TTAA 1 cut(s) 26
SchI GAGTC 1 cut(s) 48
ScrFI CCNGG 1 cut(s) 156
SetI ASST 7 cut(s) 75, 105, 112, 174, 189, 228, 282
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 44
StyD4I CCNGG 1 cut(s) 154
StyI CCWWGG 2 cut(s) 58, 214
TaiI ACGT 1 cut(s) 75
TaqI TCGA 1 cut(s) 141
Tru1I TTAA 1 cut(s) 26
Tru9I TTAA 1 cut(s) 26
Van91I CCANNNNNTGG 1 cut(s) 73
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.