FvH4_4g24772

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000622
Physical Location & Seq
Reverse (-)
26798233 .. 26798763
531 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g24772.t1

Sequence Viewer

Length: 531 bp
ATGAAGGTTTACATTGAAGTAGTATCCAAAGAGATTATCAAACCATCTTCTCCAACTCCCGACCATCTCCGCCATTACCAGTTCTCCTTTCTCGATCAGTTATCTCCCCCAGTCTACAACTCCTTGGTCCTCTTCTATGAATTCAATGGAGAAACACAACCCAGAATTCCTGAAATATCCAACCACCTTAAGACCTCCTTATCCGAGGTCTTAACACTTTTCTACCCATTAGCCGGACGAGTCAAAGACAACAAGTTTATAGATTGCAATGACGAGGGCATACCCTACCTTGAAGCTCAAGTCAAGAACTGCAAACTTGCTGATATCCTCAAGAATCCGATCCCAGAGGAGCTCAACAAGTTCGTCCCATTTGAACTGGATGACACTGCTAACGAATATGCTCTAGGAATCCAGCTCAACATATTTGAATGCGGGGGATTTGCAATTGGTCAATGCGTCTCTCATAAGCTCGCAGATGGATCATCTTACTTCATGTTCAGCAAAACTATTGAAAGAAAGCATATCAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

177

Amino Acids

20.05

Weight (kDa)

5.36

Isoelectric Point (pI)

46.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 5 - 168 2.1e-40 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 114
AciI CCGC 2 cut(s) 70, 432
AclWI GGATC 2 cut(s) 334, 487
AcsI RAATTY 2 cut(s) 140, 165
AfiI CCNNNNNNNGG 1 cut(s) 233
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 6 cut(s) 17, 145, 293, 374, 428, 512
AluBI AGCT 4 cut(s) 296, 352, 415, 469
AluI AGCT 4 cut(s) 296, 352, 415, 469
Alw21I GWGCWC 1 cut(s) 354
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 2 cut(s) 334, 487
ApoI RAATTY 2 cut(s) 140, 165
AspS9I GGNCC 1 cut(s) 127
AvaII GGWCC 1 cut(s) 127
BanII GRGCYC 1 cut(s) 354
Bbv12I GWGCWC 1 cut(s) 354
BccI CCATC 3 cut(s) 52, 72, 470
BciVI GTATCC 1 cut(s) 34
BcoDI GTCTC 1 cut(s) 463
BfaI CTAG 1 cut(s) 404
BfrI CTTAAG 1 cut(s) 188
BfuI GTATCC 1 cut(s) 34
Bme18I GGWCC 1 cut(s) 127
BmgT120I GGNCC 1 cut(s) 127
BmrI ACTGGG 1 cut(s) 104
BmuI ACTGGG 1 cut(s) 104
BpuEI CTTGAG 2 cut(s) 282, 314
BsaJI CCNNGG 2 cut(s) 123, 204
BsaXI ACNNNNNCTCC 2 cut(s) 68, 98
Bsc4I CCNNNNNNNGG 1 cut(s) 233
Bse1I ACTGG 3 cut(s) 79, 110, 381
Bse3DI GCAATG 1 cut(s) 274
BseDI CCNNGG 2 cut(s) 123, 204
BseGI GGATG 1 cut(s) 385
BseLI CCNNNNNNNGG 1 cut(s) 233
BseMI GCAATG 1 cut(s) 274
BseNI ACTGG 3 cut(s) 79, 110, 381
BseRI GAGGAG 1 cut(s) 362
BsiHKAI GWGCWC 1 cut(s) 354
BsiSI CCGG 1 cut(s) 234
BslFI GGGAC 1 cut(s) 350
BslI CCNNNNNNNGG 1 cut(s) 233
BsmAI GTCTC 1 cut(s) 463
BsmBI CGTCTC 1 cut(s) 463
BsmFI GGGAC 1 cut(s) 350
BsmI GAATGC 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 354
Bsp143I GATC 3 cut(s) 94, 339, 479
BspACI CCGC 2 cut(s) 70, 432
BspPI GGATC 2 cut(s) 334, 487
BspTI CTTAAG 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 274
BsrI ACTGG 3 cut(s) 79, 110, 381
BssECI CCNNGG 2 cut(s) 123, 204
BssMI GATC 3 cut(s) 94, 339, 479
BssT1I CCWWGG 1 cut(s) 123
Bst6I CTCTTC 1 cut(s) 137
BstAFI CTTAAG 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 471
BstF5I GGATG 1 cut(s) 385
BstKTI GATC 3 cut(s) 97, 342, 482
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 3 cut(s) 94, 339, 479
BsuI GTATCC 1 cut(s) 34
BtsCI GGATG 1 cut(s) 385
BtsI GCAGTG 1 cut(s) 384
BtsIMutI CAGTG 1 cut(s) 384
Cac8I GCNNGC 1 cut(s) 471
Cfr13I GGNCC 1 cut(s) 127
CseI GACGC 1 cut(s) 445
CviAII CATG 1 cut(s) 493
CviJI RGCY 5 cut(s) 233, 296, 352, 415, 469
CviKI_1 RGCY 5 cut(s) 233, 296, 352, 415, 469
DpnI GATC 3 cut(s) 96, 341, 481
DpnII GATC 3 cut(s) 94, 339, 479
Eam1104I CTCTTC 1 cut(s) 137
EarI CTCTTC 1 cut(s) 137
EciI GGCGGA 1 cut(s) 59
Ecl136II GAGCTC 1 cut(s) 352
Eco130I CCWWGG 1 cut(s) 123
Eco24I GRGCYC 1 cut(s) 354
Eco32I GATATC 1 cut(s) 325
Eco47I GGWCC 1 cut(s) 127
Eco53kI GAGCTC 1 cut(s) 352
EcoICRI GAGCTC 1 cut(s) 352
EcoRI GAATTC 2 cut(s) 140, 165
EcoRV GATATC 1 cut(s) 325
EcoT14I CCWWGG 1 cut(s) 123
EcoT38I GRGCYC 1 cut(s) 354
ErhI CCWWGG 1 cut(s) 123
Esp3I CGTCTC 1 cut(s) 463
FaeI CATG 1 cut(s) 496
FaiI YATR 8 cut(s) 138, 260, 281, 399, 422, 465, 494, 522
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 1 cut(s) 350
FatI CATG 1 cut(s) 492
FauI CCCGC 1 cut(s) 425
FblI GTMKAC 1 cut(s) 114
FokI GGATG 1 cut(s) 392
FriOI GRGCYC 1 cut(s) 354
FspBI CTAG 1 cut(s) 404
HapII CCGG 1 cut(s) 234
HgaI GACGC 1 cut(s) 445
Hin1II CATG 1 cut(s) 496
HinfI GANTC 3 cut(s) 240, 334, 408
HpaII CCGG 1 cut(s) 234
Hpy166II GTNNAC 2 cut(s) 10, 115
Hpy188I TCNGA 2 cut(s) 205, 339
Hpy188III TCNNGA 5 cut(s) 59, 92, 170, 304, 331
Hpy8I GTNNAC 2 cut(s) 10, 115
HpyCH4V TGCA 3 cut(s) 267, 312, 443
Hsp92II CATG 1 cut(s) 496
Kzo9I GATC 3 cut(s) 94, 339, 479
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 8 cut(s) 92, 123, 175, 183, 247, 357, 362, 425
MaeI CTAG 1 cut(s) 404
MalI GATC 3 cut(s) 96, 341, 481
MboI GATC 3 cut(s) 94, 339, 479
MboII GAAGA 2 cut(s) 39, 124
MfeI CAATTG 1 cut(s) 444
MhlI GDGCHC 1 cut(s) 354
MluCI AATT 3 cut(s) 140, 165, 444
MlyI GAGTC 1 cut(s) 249
MmeI TCCRAC 2 cut(s) 77, 204
MnlI CCTC 6 cut(s) 140, 199, 205, 268, 338, 340
MseI TTAA 3 cut(s) 189, 212, 529
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 1 cut(s) 234
MunI CAATTG 1 cut(s) 444
Mva1269I GAATGC 1 cut(s) 434
NdeII GATC 3 cut(s) 94, 339, 479
NlaIII CATG 1 cut(s) 496
PctI GAATGC 1 cut(s) 434
PfeI GAWTC 2 cut(s) 334, 408
PleI GAGTC 1 cut(s) 248
PpsI GAGTC 1 cut(s) 248
Psp124BI GAGCTC 1 cut(s) 354
PspPI GGNCC 1 cut(s) 127
SacI GAGCTC 1 cut(s) 354
SaqAI TTAA 3 cut(s) 189, 212, 529
Sau3AI GATC 3 cut(s) 94, 339, 479
Sau96I GGNCC 1 cut(s) 127
SchI GAGTC 1 cut(s) 249
SduI GDGCHC 1 cut(s) 354
SetI ASST 9 cut(s) 9, 189, 197, 210, 291, 298, 354, 417, 471
SinI GGWCC 1 cut(s) 127
SmlI CTYRAG 3 cut(s) 188, 297, 329
SmoI CTYRAG 3 cut(s) 188, 297, 329
Sse9I AATT 3 cut(s) 140, 165, 444
SsiI CCGC 2 cut(s) 70, 432
SspMI CTAG 1 cut(s) 404
SstI GAGCTC 1 cut(s) 354
StyI CCWWGG 1 cut(s) 123
TaqI TCGA 1 cut(s) 93
TasI AATT 3 cut(s) 140, 165, 444
TfiI GAWTC 2 cut(s) 334, 408
Tru1I TTAA 3 cut(s) 189, 212, 529
Tru9I TTAA 3 cut(s) 189, 212, 529
TscAI CASTG 1 cut(s) 391
TspDTI ATGAA 3 cut(s) 17, 153, 481
TspRI CASTG 1 cut(s) 391
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 127
XapI RAATTY 2 cut(s) 140, 165
XmiI GTMKAC 1 cut(s) 114
XspI CTAG 1 cut(s) 404
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.