Rh1BG102300

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000622
Physical Location & Seq
Forward (+)
17906883 .. 17907781
899 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG102300.1

Sequence Viewer

Length: 609 bp
ATGGGCATAATGAAGTTTGAAGCTGAAGTTATCTCCAAGCAGATTATCACGCCTTCTTCTCCAACCCCTGGCCATCTTCACCGTTATCAGTTCTCATTTCTTGATCAAATATCTCCCCCTGTCTATAACCCTTTGCTTCTCTTTTATGAATTCAATGCCAAAACTCAACCCAACATCACTGAAATATCCAACCACCTGAAGACCTCCTTAGCCAAAGTCTTAACCCTTTTCTACCCACTAGACAGACGACTCAAAGGCAACCAATATGTGGATTGCAACGACAATGCTATACCCTACCTTGAAGCTAATGTGAACTGCAAACTCTCGGATGTTCTCGACAATCCAATACCCGGAGAACTCAACAAGCCCATGCCATTTGGGCTGGACGATGTGGCAAACAAATCTGCTCTTGGCGTCCAACTCAACATCTTTGAATGTGGTGGTTTTGCTATTGCTCAATGCCTCTCTCACAAGCTCGCAGATGGGTTATCATACTTCACGTTCAGCAAAATTTGGGCCGCCATTGCCCGTGGCGAACCCAAAATAGCACATCCACGTACAGTTCATTTCCGCCACACTATTCCCTCCCAAGAATTTAAGTGGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

202

Amino Acids

22.76

Weight (kDa)

7.71

Isoelectric Point (pI)

34.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 8 - 185 1.3e-36 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 68, 268
AciI CCGC 2 cut(s) 519, 571
AcoI YGGCCR 1 cut(s) 70
AcsI RAATTY 3 cut(s) 149, 510, 593
AcuI CTGAAG 2 cut(s) 45, 218
AcyI GRCGYC 1 cut(s) 414
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 3 cut(s) 68, 268, 350
AgsI TTSAA 4 cut(s) 20, 154, 302, 434
AjnI CCWGG 1 cut(s) 67
AluBI AGCT 3 cut(s) 23, 305, 475
AluI AGCT 3 cut(s) 23, 305, 475
AoxI GGCC 2 cut(s) 70, 516
ApoI RAATTY 3 cut(s) 149, 510, 593
AspS9I GGNCC 1 cut(s) 516
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 1 cut(s) 71
BalI TGGCCA 1 cut(s) 72
BbsI GAAGAC 1 cut(s) 206
BccI CCATC 2 cut(s) 81, 476
BciT130I CCWGG 1 cut(s) 69
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 351
BfaI CTAG 1 cut(s) 239
BglI GCCNNNNNGGC 1 cut(s) 379
BisI GCNGC 1 cut(s) 519
BlsI GCNGC 1 cut(s) 520
Bme1390I CCNGG 2 cut(s) 69, 351
BmgT120I GGNCC 1 cut(s) 516
BmrFI CCNGG 2 cut(s) 69, 351
BpiI GAAGAC 1 cut(s) 206
Bpu10I CCTNAGC 1 cut(s) 208
BpuMI CCSGG 1 cut(s) 351
BsaAI YACGTR 1 cut(s) 557
BsaHI GRCGYC 1 cut(s) 414
BsaJI CCNNGG 2 cut(s) 67, 529
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 268, 350
Bse3DI GCAATG 1 cut(s) 522
BseBI CCWGG 1 cut(s) 69
BseDI CCNNGG 2 cut(s) 67, 529
BseGI GGATG 2 cut(s) 334, 550
BseLI CCNNNNNNNGG 3 cut(s) 68, 268, 350
BseMI GCAATG 1 cut(s) 522
BshFI GGCC 2 cut(s) 72, 518
BsiSI CCGG 1 cut(s) 351
BslI CCNNNNNNNGG 3 cut(s) 68, 268, 350
BsnI GGCC 2 cut(s) 72, 518
Bsp143I GATC 1 cut(s) 103
BspACI CCGC 2 cut(s) 519, 571
BspANI GGCC 2 cut(s) 72, 518
BsrDI GCAATG 1 cut(s) 522
BssECI CCNNGG 2 cut(s) 67, 529
BssMI GATC 1 cut(s) 103
BssNI GRCGYC 1 cut(s) 414
Bst2UI CCWGG 1 cut(s) 69
Bst4CI ACNGT 2 cut(s) 83, 562
BstACI GRCGYC 1 cut(s) 414
BstBAI YACGTR 1 cut(s) 557
BstC8I GCNNGC 1 cut(s) 477
BstDEI CTNAG 1 cut(s) 208
BstDSI CCRYGG 1 cut(s) 529
BstF5I GGATG 2 cut(s) 334, 550
BstKTI GATC 1 cut(s) 106
BstMBI GATC 1 cut(s) 103
BstMWI GCNNNNNNNGC 2 cut(s) 379, 524
BstNI CCWGG 1 cut(s) 69
BstSCI CCNGG 2 cut(s) 67, 349
BstV2I GAAGAC 1 cut(s) 206
BsuRI GGCC 2 cut(s) 72, 518
BtgI CCRYGG 1 cut(s) 529
BtsCI GGATG 2 cut(s) 334, 550
BtsIMutI CAGTG 1 cut(s) 177
Cac8I GCNNGC 1 cut(s) 477
Cfr13I GGNCC 1 cut(s) 516
CseI GACGC 1 cut(s) 403
Csp6I GTAC 1 cut(s) 558
CviAII CATG 1 cut(s) 370
CviJI RGCY 8 cut(s) 23, 72, 212, 305, 367, 382, 475, 518
CviKI_1 RGCY 8 cut(s) 23, 72, 212, 305, 367, 382, 475, 518
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 1 cut(s) 208
DpnI GATC 1 cut(s) 105
DpnII GATC 1 cut(s) 103
EaeI YGGCCR 1 cut(s) 70
EciI GGCGGA 1 cut(s) 560
Eco57I CTGAAG 2 cut(s) 45, 218
EcoRI GAATTC 1 cut(s) 149
EcoRII CCWGG 1 cut(s) 67
FaeI CATG 1 cut(s) 373
FaiI YATR 8 cut(s) 8, 126, 147, 267, 290, 371, 493, 607
FalI AAGNNNNNCTT 2 cut(s) 191, 223
FatI CATG 1 cut(s) 369
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 1 cut(s) 519
FokI GGATG 2 cut(s) 341, 537
Fsp4HI GCNGC 1 cut(s) 519
FspBI CTAG 1 cut(s) 239
GluI GCNGC 1 cut(s) 519
HaeIII GGCC 2 cut(s) 72, 518
HapII CCGG 1 cut(s) 351
HgaI GACGC 1 cut(s) 403
Hin1I GRCGYC 1 cut(s) 414
Hin1II CATG 1 cut(s) 373
HinfI GANTC 1 cut(s) 249
HpaII CCGG 1 cut(s) 351
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 1 cut(s) 313
Hpy188I TCNGA 1 cut(s) 328
Hpy188III TCNNGA 2 cut(s) 101, 335
Hpy8I GTNNAC 1 cut(s) 313
HpyAV CCTTC 1 cut(s) 63
HpyCH4III ACNGT 2 cut(s) 83, 562
HpyCH4IV ACGT 2 cut(s) 500, 556
HpyCH4V TGCA 2 cut(s) 276, 318
HpyF10VI GCNNNNNNNGC 2 cut(s) 379, 524
HpyF3I CTNAG 1 cut(s) 208
HpySE526I ACGT 2 cut(s) 500, 556
Hsp92I GRCGYC 1 cut(s) 414
Hsp92II CATG 1 cut(s) 373
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 1 cut(s) 103
LpnPI CCDG 6 cut(s) 54, 81, 132, 209, 364, 368
MaeI CTAG 1 cut(s) 239
MaeII ACGT 2 cut(s) 500, 556
MalI GATC 1 cut(s) 105
MboI GATC 1 cut(s) 103
MboII GAAGA 3 cut(s) 48, 68, 211
MlsI TGGCCA 1 cut(s) 72
MluCI AATT 3 cut(s) 149, 510, 593
MluNI TGGCCA 1 cut(s) 72
MlyI GAGTC 1 cut(s) 243
MmeI TCCRAC 3 cut(s) 86, 213, 442
MnlI CCTC 3 cut(s) 214, 473, 595
Mox20I TGGCCA 1 cut(s) 72
MscI TGGCCA 1 cut(s) 72
MseI TTAA 2 cut(s) 221, 597
Msp20I TGGCCA 1 cut(s) 72
MspI CCGG 1 cut(s) 351
MspR9I CCNGG 2 cut(s) 69, 351
MvaI CCWGG 1 cut(s) 69
MwoI GCNNNNNNNGC 2 cut(s) 379, 524
NciI CCSGG 1 cut(s) 351
NdeII GATC 1 cut(s) 103
NlaIII CATG 1 cut(s) 373
PflMI CCANNNNNTGG 2 cut(s) 68, 268
PkrI GCNGC 1 cut(s) 520
PleI GAGTC 1 cut(s) 243
PpsI GAGTC 1 cut(s) 243
Ppu21I YACGTR 1 cut(s) 557
Psp6I CCWGG 1 cut(s) 67
PspGI CCWGG 1 cut(s) 67
PspPI GGNCC 1 cut(s) 516
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
SaqAI TTAA 2 cut(s) 221, 597
SatI GCNGC 1 cut(s) 519
Sau3AI GATC 1 cut(s) 103
Sau96I GGNCC 1 cut(s) 516
SchI GAGTC 1 cut(s) 243
ScrFI CCNGG 2 cut(s) 69, 351
SetI ASST 8 cut(s) 25, 198, 206, 300, 307, 477, 503, 559
Sse9I AATT 3 cut(s) 149, 510, 593
SsiI CCGC 2 cut(s) 519, 571
SspMI CTAG 1 cut(s) 239
StyD4I CCNGG 2 cut(s) 67, 349
TaaI ACNGT 2 cut(s) 83, 562
TaiI ACGT 2 cut(s) 503, 559
TaqI TCGA 1 cut(s) 336
TasI AATT 3 cut(s) 149, 510, 593
TauI GCSGC 1 cut(s) 521
Tru1I TTAA 2 cut(s) 221, 597
Tru9I TTAA 2 cut(s) 221, 597
TscAI CASTG 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 26, 162, 554
TspRI CASTG 1 cut(s) 184
Van91I CCANNNNNTGG 2 cut(s) 68, 268
XapI RAATTY 3 cut(s) 149, 510, 593
XspI CTAG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.