Rorug01G0111100

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0000622
Physical Location & Seq
Forward (+)
19791426 .. 19792223
798 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0111100.1

Sequence Viewer

Length: 798 bp
ATGGAAAATAGTGGAGGAGGATCCTTGACTAGATCATCTGTGTGGTATCAGTACTGGTTTGTAACTGTAGTCTTTGTTCTTGTTGGTTTGTTGGGCGAAAAGGTTAAGGCGTGTACACCGTCTTCCTGCGGCGATGTCCGTAACATAAGCTTCCCTTTCCGACTCAATAGTGATCCAAAGCAGTGCGGCGACTCCAGATATACTTTGTACTGTGAGAACAACGTTACTGTATTGTACCTTCCATCTGGAAAGTACTACGTGCAAGAAATCGGGTACCCCATCACCATATATGGCACAATCCGAGTTGTGGATCCTGGTATTCAGAAGAACAATTGCTCCTCCATTCCTCGTTATCCTTTAGACTATTCTTATAATTATATGTCTTCCGATTTTGATGATACGTTTCTGTATACTGCTGAGTCATCTAATGAACCAATAACGTTCTTAAAGTGTGCAAATCCAGTGAACTCTTCTCATTATGTGGATACTTCTCCATGCATTAACATCAATGATGGTGCTTCTTCTGTGTCTGGACCAAATACGAGTACGTATGGTTATGTCACGATTAGCTACACCAATGCATCGGAATTTGAGCCCGGCTGCACTGTAGAGTGGTCAACGGCTGTTGATTACTTGCAGTATAAAGCACTATTCAAAAAAGGCCAGCAAATCGTATCGTATGAATCTGTACACAACGCTCTTGCATATGGCTTTCAGGTTGAGTGGACTACTCCAACATATCGCTGTATAGCATATATAGGTGTGAAATGCGTGCCATACACCATTACAGGTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

265

Amino Acids

29.59

Weight (kDa)

5.05

Isoelectric Point (pI)

33.54

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GUB_WAK_bind PF13947 38 - 103 5e-15 Wall-associated receptor kinase galacturonan-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 372
Acc65I GGTACC 1 cut(s) 273
AccB1I GGYRCC 1 cut(s) 273
AccI GTMKAC 1 cut(s) 410
AciI CCGC 2 cut(s) 129, 186
AclI AACGTT 2 cut(s) 222, 440
AclWI GGATC 5 cut(s) 15, 28, 167, 305, 318
AcsI RAATTY 1 cut(s) 587
AfaI GTAC 8 cut(s) 53, 115, 209, 236, 254, 275, 547, 690
AfiI CCNNNNNNNGG 1 cut(s) 307
AgsI TTSAA 1 cut(s) 655
AjnI CCWGG 1 cut(s) 313
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 2 cut(s) 150, 570
AluI AGCT 2 cut(s) 150, 570
AlwI GGATC 5 cut(s) 15, 28, 167, 305, 318
AoxI GGCC 1 cut(s) 661
ApeKI GCWGC 1 cut(s) 600
ApoI RAATTY 1 cut(s) 587
Asp718I GGTACC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 533
AsuC2I CCSGG 1 cut(s) 597
AsuHPI GGTGA 1 cut(s) 274
AvaII GGWCC 1 cut(s) 533
BamHI GGATCC 2 cut(s) 20, 310
BanI GGYRCC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 597
BarI GAAGNNNNNNTAC 4 cut(s) 106, 138, 222, 254
BbsI GAAGAC 2 cut(s) 114, 375
BbvI GCAGC 1 cut(s) 587
BccI CCATC 3 cut(s) 250, 287, 506
BceAI ACGGC 1 cut(s) 636
BciT130I CCWGG 1 cut(s) 315
BciVI GTATCC 1 cut(s) 478
BcnI CCSGG 1 cut(s) 597
BfaI CTAG 1 cut(s) 30
BfmI CTRYAG 2 cut(s) 66, 606
BfuI GTATCC 1 cut(s) 478
BisI GCNGC 3 cut(s) 130, 187, 601
BlsI GCNGC 3 cut(s) 131, 188, 602
BmcAI AGTACT 2 cut(s) 53, 254
Bme1390I CCNGG 2 cut(s) 315, 597
Bme18I GGWCC 1 cut(s) 533
BmgT120I GGNCC 1 cut(s) 533
BmiI GGNNCC 3 cut(s) 22, 275, 312
BmrFI CCNGG 2 cut(s) 315, 597
BmsI GCATC 1 cut(s) 590
BpiI GAAGAC 2 cut(s) 114, 375
BpmI CTGGAG 1 cut(s) 178
BpuMI CCSGG 1 cut(s) 597
BsaAI YACGTR 2 cut(s) 259, 549
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 1 cut(s) 307
Bse1I ACTGG 2 cut(s) 59, 461
BseBI CCWGG 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 307
BseMII CTCAG 1 cut(s) 408
BseNI ACTGG 2 cut(s) 59, 461
BseRI GAGGAG 2 cut(s) 30, 328
BseXI GCAGC 1 cut(s) 587
BsgI GTGCAG 1 cut(s) 586
BshFI GGCC 1 cut(s) 663
BshNI GGYRCC 1 cut(s) 273
BsiSI CCGG 1 cut(s) 597
BslI CCNNNNNNNGG 1 cut(s) 307
BsnI GGCC 1 cut(s) 663
Bsp1286I GDGCHC 1 cut(s) 597
Bsp1407I TGTACA 2 cut(s) 113, 688
Bsp143I GATC 4 cut(s) 20, 32, 172, 310
BspACI CCGC 2 cut(s) 129, 186
BspANI GGCC 1 cut(s) 663
BspCNI CTCAG 1 cut(s) 409
BspLI GGNNCC 3 cut(s) 22, 275, 312
BspPI GGATC 5 cut(s) 15, 28, 167, 305, 318
BspT107I GGYRCC 1 cut(s) 273
BsrGI TGTACA 2 cut(s) 113, 688
BsrI ACTGG 2 cut(s) 59, 461
BssMI GATC 4 cut(s) 20, 32, 172, 310
BssNAI GTATAC 1 cut(s) 411
Bst1107I GTATAC 1 cut(s) 411
Bst2UI CCWGG 1 cut(s) 315
Bst4CI ACNGT 5 cut(s) 67, 120, 212, 229, 607
Bst6I CTCTTC 1 cut(s) 475
BstAUI TGTACA 2 cut(s) 113, 688
BstBAI YACGTR 2 cut(s) 259, 549
BstC8I GCNNGC 2 cut(s) 665, 773
BstDEI CTNAG 1 cut(s) 417
BstKTI GATC 4 cut(s) 23, 35, 175, 313
BstMBI GATC 4 cut(s) 20, 32, 172, 310
BstNI CCWGG 1 cut(s) 315
BstSCI CCNGG 2 cut(s) 313, 595
BstSFI CTRYAG 2 cut(s) 66, 606
BstSNI TACGTA 1 cut(s) 549
BstV1I GCAGC 1 cut(s) 587
BstV2I GAAGAC 2 cut(s) 114, 375
BstX2I RGATCY 2 cut(s) 20, 310
BstYI RGATCY 2 cut(s) 20, 310
BstZ17I GTATAC 1 cut(s) 411
BsuI GTATCC 1 cut(s) 478
BsuRI GGCC 1 cut(s) 663
BtgZI GCGATG 1 cut(s) 147
BtsI GCAGTG 1 cut(s) 188
BtsIMutI CAGTG 3 cut(s) 188, 468, 603
Cac8I GCNNGC 2 cut(s) 665, 773
Cfr13I GGNCC 1 cut(s) 533
Csp6I GTAC 8 cut(s) 52, 114, 208, 235, 253, 274, 546, 689
CviAII CATG 1 cut(s) 495
CviJI RGCY 7 cut(s) 150, 570, 595, 600, 623, 663, 711
CviKI_1 RGCY 7 cut(s) 150, 570, 595, 600, 623, 663, 711
CviQI GTAC 8 cut(s) 52, 114, 208, 235, 253, 274, 546, 689
DdeI CTNAG 1 cut(s) 417
DpnI GATC 4 cut(s) 22, 34, 174, 312
DpnII GATC 4 cut(s) 20, 32, 172, 310
Eam1104I CTCTTC 1 cut(s) 475
EarI CTCTTC 1 cut(s) 475
Eco105I TACGTA 1 cut(s) 549
Eco24I GRGCYC 1 cut(s) 597
Eco47I GGWCC 1 cut(s) 533
EcoRII CCWGG 1 cut(s) 313
EcoT22I ATGCAT 2 cut(s) 500, 583
EcoT38I GRGCYC 1 cut(s) 597
FaeI CATG 1 cut(s) 498
FalI AAGNNNNNCTT 2 cut(s) 139, 171
FatI CATG 1 cut(s) 494
FauNDI CATATG 1 cut(s) 706
FblI GTMKAC 1 cut(s) 410
Fnu4HI GCNGC 3 cut(s) 130, 187, 601
FriOI GRGCYC 1 cut(s) 597
Fsp4HI GCNGC 3 cut(s) 130, 187, 601
FspBI CTAG 1 cut(s) 30
GluI GCNGC 3 cut(s) 130, 187, 601
GsuI CTGGAG 1 cut(s) 178
HaeIII GGCC 1 cut(s) 663
HapII CCGG 1 cut(s) 597
Hin1II CATG 1 cut(s) 498
HincII GTYRAC 1 cut(s) 618
HindII GTYRAC 1 cut(s) 618
HindIII AAGCTT 1 cut(s) 148
HinfI GANTC 4 cut(s) 162, 191, 419, 683
HpaII CCGG 1 cut(s) 597
HphI GGTGA 1 cut(s) 274
Hpy166II GTNNAC 7 cut(s) 114, 116, 411, 466, 618, 691, 726
Hpy188I TCNGA 5 cut(s) 161, 302, 324, 388, 586
Hpy188III TCNNGA 4 cut(s) 195, 246, 531, 562
Hpy8I GTNNAC 7 cut(s) 114, 116, 411, 466, 618, 691, 726
HpyAV CCTTC 1 cut(s) 248
HpyCH4III ACNGT 5 cut(s) 67, 120, 212, 229, 607
HpyCH4IV ACGT 5 cut(s) 222, 258, 401, 440, 548
HpyCH4V TGCA 7 cut(s) 262, 455, 498, 581, 603, 637, 704
HpyF3I CTNAG 1 cut(s) 417
HpySE526I ACGT 5 cut(s) 222, 258, 401, 440, 548
Hsp92II CATG 1 cut(s) 498
KpnI GGTACC 1 cut(s) 277
Kzo9I GATC 4 cut(s) 20, 32, 172, 310
LmnI GCTCC 1 cut(s) 341
Lsp1109I GCAGC 1 cut(s) 587
LweI GCATC 1 cut(s) 590
MaeI CTAG 1 cut(s) 30
MaeII ACGT 5 cut(s) 222, 258, 401, 440, 548
MaeIII GTNAC 4 cut(s) 61, 140, 223, 559
MalI GATC 4 cut(s) 22, 34, 174, 312
MboI GATC 4 cut(s) 20, 32, 172, 310
MboII GAAGA 5 cut(s) 114, 337, 375, 462, 513
MfeI CAATTG 1 cut(s) 331
MflI RGATCY 2 cut(s) 20, 310
MhlI GDGCHC 1 cut(s) 597
MluCI AATT 3 cut(s) 331, 373, 587
MlyI GAGTC 3 cut(s) 156, 185, 428
MmeI TCCRAC 2 cut(s) 184, 758
MnlI CCTC 4 cut(s) 8, 11, 349, 357
Mph1103I ATGCAT 2 cut(s) 500, 583
MseI TTAA 3 cut(s) 105, 446, 501
MslI CAYNNNNRTG 1 cut(s) 40
MspI CCGG 1 cut(s) 597
MspR9I CCNGG 2 cut(s) 315, 597
MunI CAATTG 1 cut(s) 331
MvaI CCWGG 1 cut(s) 315
NciI CCSGG 1 cut(s) 597
NdeI CATATG 1 cut(s) 706
NdeII GATC 4 cut(s) 20, 32, 172, 310
NlaIII CATG 1 cut(s) 498
NlaIV GGNNCC 3 cut(s) 22, 275, 312
NmuCI GTSAC 1 cut(s) 559
NsiI ATGCAT 2 cut(s) 500, 583
PfeI GAWTC 1 cut(s) 683
PkrI GCNGC 3 cut(s) 131, 188, 602
PleI GAGTC 3 cut(s) 156, 185, 427
PpsI GAGTC 3 cut(s) 156, 185, 427
Ppu21I YACGTR 2 cut(s) 259, 549
PsiI TTATAA 1 cut(s) 372
Psp1406I AACGTT 2 cut(s) 222, 440
Psp6I CCWGG 1 cut(s) 313
PspGI CCWGG 1 cut(s) 313
PspN4I GGNNCC 3 cut(s) 22, 275, 312
PspPI GGNCC 1 cut(s) 533
PsrI GAACNNNNNNTAC 2 cut(s) 60, 92
PsuI RGATCY 2 cut(s) 20, 310
RsaI GTAC 8 cut(s) 53, 115, 209, 236, 254, 275, 547, 690
RsaNI GTAC 8 cut(s) 52, 114, 208, 235, 253, 274, 546, 689
RseI CAYNNNNRTG 1 cut(s) 40
SaqAI TTAA 3 cut(s) 105, 446, 501
SatI GCNGC 3 cut(s) 130, 187, 601
Sau3AI GATC 4 cut(s) 20, 32, 172, 310
Sau96I GGNCC 1 cut(s) 533
ScaI AGTACT 2 cut(s) 53, 254
SchI GAGTC 3 cut(s) 156, 185, 428
ScrFI CCNGG 2 cut(s) 315, 597
SduI GDGCHC 1 cut(s) 597
SfaNI GCATC 1 cut(s) 590
SfcI CTRYAG 2 cut(s) 66, 606
SinI GGWCC 1 cut(s) 533
SmiMI CAYNNNNRTG 1 cut(s) 40
SnaBI TACGTA 1 cut(s) 549
Sse9I AATT 3 cut(s) 331, 373, 587
SsiI CCGC 2 cut(s) 129, 186
SspMI CTAG 1 cut(s) 30
StyD4I CCNGG 2 cut(s) 313, 595
TaaI ACNGT 5 cut(s) 67, 120, 212, 229, 607
TaiI ACGT 5 cut(s) 225, 261, 404, 443, 551
TasI AATT 3 cut(s) 331, 373, 587
TatI WGTACW 5 cut(s) 51, 113, 207, 252, 688
TauI GCSGC 2 cut(s) 132, 189
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 3 cut(s) 105, 446, 501
Tru9I TTAA 3 cut(s) 105, 446, 501
TscAI CASTG 3 cut(s) 188, 468, 610
TseFI GTSAC 1 cut(s) 559
TseI GCWGC 1 cut(s) 600
Tsp45I GTSAC 1 cut(s) 559
TspDTI ATGAA 2 cut(s) 444, 696
TspGWI ACGGA 1 cut(s) 128
TspRI CASTG 3 cut(s) 188, 468, 610
VpaK11BI GGWCC 1 cut(s) 533
XapI RAATTY 1 cut(s) 587
XmiI GTMKAC 1 cut(s) 410
XspI CTAG 1 cut(s) 30
ZrmI AGTACT 2 cut(s) 53, 254
Zsp2I ATGCAT 2 cut(s) 500, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.