MD13G1109200.v1.1

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr13
OG0000622
Physical Location & Seq
Forward (+)
7899816 .. 7901186
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
MD13G1109200.v1.1.491

Sequence Viewer

Length: 609 bp
ATGCCCCTCGCGTGTCGAGAGACCTTATCCGCTTTCATATGGAGTCGATTTGTGGTGGCTACAAAGGATTGTACCGTGAATAAATTGTACAGGGTGGTCCATGCAGTGAACCTACGTCCACGGTTTAGTCCACCGTTGCCTCAACATTCTTGTGGGAATCTTTTTCCCATGACATCACCTTTGCAAACCAGTAACGGTGGGGAGGAAGAATGTGATGGGGTGGTGATTGGGGAGGTGCGAGAAACACTGAGCAAGATTGACAAAGAGTACGTGAAGGAATTACAAAGGCAGGGTGATAAGCACTTGGGTTTAATGAAGGAAACTGCTGATAGTTTCAAGAGAGGAGACATGGCTACGTTACTTAGCTTCAGTAGTTATTGTAGGTTTCCTCTTTATGAAAATGATTTTGGTTGGGGCAGACCTGCGTGGGTGGGATCACCGGCACTGACCTATAAGAACCTGGTGCTTTTCATGGACACCAAGGAGGGTGATGGAATAGAGGCATATGTTAGCTTGGAGGAGAGAGTAATGGCCAAATTCGAATGTGACAGCGAGTTGCTCTCTTATGTTTCTCCAACCGGTCGGGTGCTGCCGAGTTGTGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

203

Amino Acids

22.73

Weight (kDa)

5.49

Isoelectric Point (pI)

56.01

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 7 - 186 1.1e-26 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 430
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 30
AclWI GGATC 1 cut(s) 442
AcoI YGGCCR 1 cut(s) 531
AcsI RAATTY 1 cut(s) 536
AcuI CTGAAG 1 cut(s) 352
AfaI GTAC 3 cut(s) 73, 89, 269
AgeI ACCGGT 1 cut(s) 578
AgsI TTSAA 1 cut(s) 337
AjnI CCWGG 1 cut(s) 459
AjuI GAANNNNNNNTTGG 2 cut(s) 390, 422
AluBI AGCT 2 cut(s) 366, 513
AluI AGCT 2 cut(s) 366, 513
Alw26I GTCTC 2 cut(s) 14, 339
AlwI GGATC 1 cut(s) 442
AoxI GGCC 1 cut(s) 531
ApeKI GCWGC 1 cut(s) 589
ApoI RAATTY 1 cut(s) 536
ArsI GACNNNNNNTTYG 2 cut(s) 163, 195
AsiGI ACCGGT 1 cut(s) 578
AspS9I GGNCC 1 cut(s) 97
AsuHPI GGTGA 5 cut(s) 168, 235, 305, 429, 500
AsuII TTCGAA 1 cut(s) 540
AvaII GGWCC 1 cut(s) 97
BalI TGGCCA 1 cut(s) 533
BbvI GCAGC 1 cut(s) 576
BccI CCATC 2 cut(s) 209, 485
BciT130I CCWGG 1 cut(s) 461
BcoDI GTCTC 2 cut(s) 14, 339
BfuAI ACCTGC 1 cut(s) 430
BisI GCNGC 1 cut(s) 590
BlsI GCNGC 1 cut(s) 591
Bme1390I CCNGG 1 cut(s) 461
Bme18I GGWCC 1 cut(s) 97
BmgT120I GGNCC 1 cut(s) 97
BmrFI CCNGG 1 cut(s) 461
BplI GAGNNNNNCTC 2 cut(s) 545, 577
Bpu14I TTCGAA 1 cut(s) 540
BsaAI YACGTR 1 cut(s) 271
BsaI GGTCTC 1 cut(s) 14
BsaJI CCNNGG 2 cut(s) 119, 480
BsaWI WCCGGW 1 cut(s) 578
Bse118I RCCGGY 2 cut(s) 439, 578
Bse1I ACTGG 1 cut(s) 189
BseBI CCWGG 1 cut(s) 461
BseDI CCNNGG 2 cut(s) 119, 480
BseMII CTCAG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 189
BseRI GAGGAG 2 cut(s) 357, 533
BseXI GCAGC 1 cut(s) 576
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 583
BshFI GGCC 1 cut(s) 533
BshTI ACCGGT 1 cut(s) 578
BsiEI CGRYCG 1 cut(s) 583
BsiSI CCGG 2 cut(s) 440, 579
BsmAI GTCTC 2 cut(s) 14, 339
BsnI GGCC 1 cut(s) 533
Bso31I GGTCTC 1 cut(s) 14
Bsp119I TTCGAA 1 cut(s) 540
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 1 cut(s) 434
BspACI CCGC 1 cut(s) 30
BspANI GGCC 1 cut(s) 533
BspCNI CTCAG 1 cut(s) 240
BspFNI CGCG 1 cut(s) 11
BspMI ACCTGC 1 cut(s) 430
BspPI GGATC 1 cut(s) 442
BspT104I TTCGAA 1 cut(s) 540
BspTNI GGTCTC 1 cut(s) 14
BsrFI RCCGGY 2 cut(s) 439, 578
BsrGI TGTACA 1 cut(s) 87
BsrI ACTGG 1 cut(s) 189
BssAI RCCGGY 2 cut(s) 439, 578
BssECI CCNNGG 2 cut(s) 119, 480
BssMI GATC 1 cut(s) 434
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 1 cut(s) 461
Bst4CI ACNGT 4 cut(s) 76, 123, 135, 197
BstAUI TGTACA 1 cut(s) 87
BstBAI YACGTR 1 cut(s) 271
BstBI TTCGAA 1 cut(s) 540
BstDEI CTNAG 2 cut(s) 248, 362
BstDSI CCRYGG 1 cut(s) 119
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 1 cut(s) 437
BstMAI GTCTC 2 cut(s) 14, 339
BstMBI GATC 1 cut(s) 434
BstMCI CGRYCG 1 cut(s) 583
BstNI CCWGG 1 cut(s) 461
BstSCI CCNGG 1 cut(s) 459
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 576
BsuRI GGCC 1 cut(s) 533
BtgI CCRYGG 1 cut(s) 119
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 3 cut(s) 111, 245, 443
BveI ACCTGC 1 cut(s) 430
Cfr10I RCCGGY 2 cut(s) 439, 578
Cfr13I GGNCC 1 cut(s) 97
CsiI ACCWGGT 1 cut(s) 459
Csp6I GTAC 3 cut(s) 72, 88, 268
CspAI ACCGGT 1 cut(s) 578
CviAII CATG 4 cut(s) 101, 169, 349, 472
CviJI RGCY 5 cut(s) 59, 353, 366, 513, 533
CviKI_1 RGCY 5 cut(s) 59, 353, 366, 513, 533
CviQI GTAC 3 cut(s) 72, 88, 268
DdeI CTNAG 2 cut(s) 248, 362
DpnI GATC 1 cut(s) 436
DpnII GATC 1 cut(s) 434
EaeI YGGCCR 1 cut(s) 531
Eco130I CCWWGG 1 cut(s) 480
Eco31I GGTCTC 1 cut(s) 14
Eco47I GGWCC 1 cut(s) 97
Eco57I CTGAAG 1 cut(s) 352
EcoRII CCWGG 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 480
ErhI CCWWGG 1 cut(s) 480
FaeI CATG 4 cut(s) 104, 172, 352, 475
FatI CATG 4 cut(s) 100, 168, 348, 471
FauNDI CATATG 2 cut(s) 38, 505
Fnu4HI GCNGC 1 cut(s) 590
Fsp4HI GCNGC 1 cut(s) 590
GluI GCNGC 1 cut(s) 590
HaeIII GGCC 1 cut(s) 533
HapII CCGG 2 cut(s) 440, 579
Hin1II CATG 4 cut(s) 104, 172, 352, 475
HinfI GANTC 2 cut(s) 43, 157
HpaII CCGG 2 cut(s) 440, 579
HphI GGTGA 5 cut(s) 168, 235, 305, 429, 500
Hpy166II GTNNAC 3 cut(s) 109, 119, 131
Hpy188III TCNNGA 2 cut(s) 17, 337
Hpy8I GTNNAC 3 cut(s) 109, 119, 131
HpyAV CCTTC 2 cut(s) 268, 310
HpyCH4III ACNGT 4 cut(s) 76, 123, 135, 197
HpyCH4IV ACGT 3 cut(s) 115, 270, 356
HpyCH4V TGCA 2 cut(s) 104, 184
HpyF3I CTNAG 2 cut(s) 248, 362
HpySE526I ACGT 3 cut(s) 115, 270, 356
Hsp92II CATG 4 cut(s) 104, 172, 352, 475
Kzo9I GATC 1 cut(s) 434
LpnPI CCDG 8 cut(s) 76, 202, 275, 435, 446, 453, 473, 592
Lsp1109I GCAGC 1 cut(s) 576
MabI ACCWGGT 1 cut(s) 459
MaeII ACGT 3 cut(s) 115, 270, 356
MaeIII GTNAC 3 cut(s) 191, 357, 545
MalI GATC 1 cut(s) 436
MboI GATC 1 cut(s) 434
MboII GAAGA 1 cut(s) 218
MlsI TGGCCA 1 cut(s) 533
MluCI AATT 4 cut(s) 83, 278, 536, 604
MluNI TGGCCA 1 cut(s) 533
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 599
MnlI CCTC 9 cut(s) 17, 150, 196, 226, 335, 399, 478, 493, 511
Mox20I TGGCCA 1 cut(s) 533
MscI TGGCCA 1 cut(s) 533
MseI TTAA 2 cut(s) 311, 607
MslI CAYNNNNRTG 1 cut(s) 150
Msp20I TGGCCA 1 cut(s) 533
MspI CCGG 2 cut(s) 440, 579
MspR9I CCNGG 1 cut(s) 461
MvaI CCWGG 1 cut(s) 461
MvnI CGCG 1 cut(s) 11
NdeI CATATG 2 cut(s) 38, 505
NdeII GATC 1 cut(s) 434
NlaIII CATG 4 cut(s) 104, 172, 352, 475
NmuCI GTSAC 1 cut(s) 545
NspV TTCGAA 1 cut(s) 540
PfeI GAWTC 1 cut(s) 157
PinAI ACCGGT 1 cut(s) 578
PkrI GCNGC 1 cut(s) 591
PleI GAGTC 1 cut(s) 51
PpsI GAGTC 1 cut(s) 51
Ppu21I YACGTR 1 cut(s) 271
Psp6I CCWGG 1 cut(s) 459
PspGI CCWGG 1 cut(s) 459
PspPI GGNCC 1 cut(s) 97
RsaI GTAC 3 cut(s) 73, 89, 269
RsaNI GTAC 3 cut(s) 72, 88, 268
RseI CAYNNNNRTG 1 cut(s) 150
SaqAI TTAA 2 cut(s) 311, 607
SatI GCNGC 1 cut(s) 590
Sau3AI GATC 1 cut(s) 434
Sau96I GGNCC 1 cut(s) 97
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 461
SexAI ACCWGGT 1 cut(s) 459
SfuI TTCGAA 1 cut(s) 540
SinI GGWCC 1 cut(s) 97
SmiMI CAYNNNNRTG 1 cut(s) 150
Sse9I AATT 4 cut(s) 83, 278, 536, 604
SsiI CCGC 1 cut(s) 30
StyD4I CCNGG 1 cut(s) 459
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 4 cut(s) 76, 123, 135, 197
TaiI ACGT 3 cut(s) 118, 273, 359
TaqI TCGA 3 cut(s) 16, 46, 540
TasI AATT 4 cut(s) 83, 278, 536, 604
TatI WGTACW 1 cut(s) 87
TfiI GAWTC 1 cut(s) 157
Tru1I TTAA 2 cut(s) 311, 607
Tru9I TTAA 2 cut(s) 311, 607
TscAI CASTG 3 cut(s) 111, 252, 450
TseFI GTSAC 1 cut(s) 545
TseI GCWGC 1 cut(s) 589
Tsp45I GTSAC 1 cut(s) 545
TspDTI ATGAA 4 cut(s) 25, 329, 411, 460
TspRI CASTG 3 cut(s) 111, 252, 450
VpaK11BI GGWCC 1 cut(s) 97
XapI RAATTY 1 cut(s) 536
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.