pycom13g09940

Vinorine synthase-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
Physical Location & Seq
Reverse (-)
6646382 .. 6647714
1333 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g09940.2

Sequence Viewer

Length: 1116 bp
ATGAAGGTTGAGGTTGAAGTGATCTCCAATGAGATTATCAAACCGTCTTCTCCAACTCCTGGCCACCTTCGCCATTACCAATTCTCCTTTCTTGATCAAATGGCTCCCCATGTCTACAACCCTTTGCTCCTCTTCTATGAATACAATGCCAATATGCATCCCAACATCATTGAAATATCCAACCACCTTAAGAACTCCTTATCCGAGGCCCTATCGCTATTCTACCCGCTAGCCGGTCGAATCAAAGACAACCGCTTCATACATTGCAATGACGAGGGCATCCCCTACGTCGAAGCTCGAGTGCTGAATTGCACTCTCTCTGATGTTCTCAGCAACCCCAACCCTGGTGAACTTAACAAGTTCATGCCATTTGAACTTGATGATATTACCAATCCATTACCCTTTGGGGTCCAGCTCAACATATTTCAGTGTGGAGGGTTTGCTATTGGCCAATGCATTTCTCACAAGATTGCTGATGGGTTGTCCCATTTCACGTTCAGCAAAATTTGGGCAGCCATCGCCCGTGGGGAACAAGCCAACATAGACCCTCCACAATTTGTGTCAGCCACACTCTTCCCACCAAAGGAGTTCAATACTGGATTCGATGGAGGCGTTGGAATCACAAAAGATAGAGTGACAAAGAGACCTTATCCGCTTTCATATGGAGTCGATATGTGGCCGCTACAAAGGATTGTACCTAATGGCGGGGAGGAAGAATGTGATGGGGTGGTGATTGGGGAGGTGCGAGAAGCGATAAGCAAGATTGACAATGAGTACTTGAAGCAATTACAAGGGCAGGGTGACGAGCACTTGGGTTTGATGAAGAAAGCTGCTGATAGTTTCAAGAGAGGAGACATGGTTGCGGTACTTAGCTTCAGTAGCTATTGTAGGTTTCCTCTCTATGAGAACGACTTTGGTTGGGGTAGACCTGCGTGGGTGGGATCACCGGCACTGACCTACAAGAACCTAGTGCTTTTCATGGACACCAAGGAGGGTGATGGAATAGAGGCATATGTTAGCTTGGAGGAGAGAGTCATGGCCAAATTTGAATGTGATAGCGAGTTGCTCTCTTATGTTTCTCCAGCCGGTCGGGTCCTGCTGAGCTGTGGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

372

Amino Acids

41.45

Weight (kDa)

5.12

Isoelectric Point (pI)

43.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 937
AccB7I CCANNNNNTGG 1 cut(s) 59
AccI GTMKAC 2 cut(s) 114, 925
AciI CCGC 6 cut(s) 227, 253, 653, 680, 705, 863
AclWI GGATC 1 cut(s) 949
AcoI YGGCCR 4 cut(s) 61, 448, 677, 1038
AcsI RAATTY 2 cut(s) 504, 1043
AcuI CTGAAG 1 cut(s) 859
AfaI GTAC 3 cut(s) 696, 776, 867
AfiI CCNNNNNNNGG 5 cut(s) 59, 233, 344, 583, 704
AflII CTTAAG 1 cut(s) 188
AgsI TTSAA 7 cut(s) 17, 173, 374, 592, 781, 844, 1049
AjnI CCWGG 2 cut(s) 58, 343
AjuI GAANNNNNNNTTGG 2 cut(s) 72, 104
AloI GAACNNNNNNTCC 2 cut(s) 185, 217
AluBI AGCT 7 cut(s) 296, 415, 830, 873, 882, 1020, 1104
AluI AGCT 7 cut(s) 296, 415, 830, 873, 882, 1020, 1104
Alw21I GWGCWC 1 cut(s) 810
Alw26I GTCTC 2 cut(s) 637, 846
AlwI GGATC 1 cut(s) 949
Ama87I CYCGRG 1 cut(s) 297
AoxI GGCC 5 cut(s) 61, 207, 448, 677, 1038
ApeKI GCWGC 2 cut(s) 512, 830
ApoI RAATTY 2 cut(s) 504, 1043
AspS9I GGNCC 3 cut(s) 208, 409, 1093
AsuHPI GGTGA 5 cut(s) 359, 742, 812, 936, 1007
AsuNHI GCTAGC 1 cut(s) 229
AvaI CYCGRG 1 cut(s) 297
AvaII GGWCC 2 cut(s) 409, 1093
BalI TGGCCA 3 cut(s) 63, 450, 1040
BbsI GAAGAC 1 cut(s) 39
Bbv12I GWGCWC 1 cut(s) 810
BbvI GCAGC 2 cut(s) 524, 817
BccI CCATC 5 cut(s) 470, 524, 599, 716, 992
BciT130I CCWGG 2 cut(s) 60, 345
BclI TGATCA 1 cut(s) 94
BcoDI GTCTC 2 cut(s) 637, 846
BfaI CTAG 2 cut(s) 230, 968
BfrI CTTAAG 1 cut(s) 188
BfuAI ACCTGC 1 cut(s) 937
BisI GCNGC 3 cut(s) 513, 680, 831
BlpI GCTNAGC 1 cut(s) 1100
BlsI GCNGC 3 cut(s) 514, 681, 832
BmcAI AGTACT 1 cut(s) 776
Bme1390I CCNGG 2 cut(s) 60, 345
Bme18I GGWCC 2 cut(s) 409, 1093
BmeT110I CYCGRG 1 cut(s) 297
BmgT120I GGNCC 3 cut(s) 208, 409, 1093
BmiI GGNNCC 3 cut(s) 105, 410, 1094
BmrFI CCNGG 2 cut(s) 60, 345
BmsI GCATC 2 cut(s) 166, 288
BmtI GCTAGC 1 cut(s) 233
BpiI GAAGAC 1 cut(s) 39
BplI GAGNNNNNCTC 2 cut(s) 1052, 1084
BpmI CTGGAG 1 cut(s) 1065
Bpu1102I GCTNAGC 1 cut(s) 1100
BsaI GGTCTC 1 cut(s) 637
BsaJI CCNNGG 4 cut(s) 204, 343, 523, 987
BsaXI ACNNNNNCTCC 4 cut(s) 68, 98, 843, 873
Bsc4I CCNNNNNNNGG 5 cut(s) 59, 233, 344, 583, 704
Bse118I RCCGGY 3 cut(s) 233, 946, 1085
Bse1I ACTGG 1 cut(s) 601
Bse3DI GCAATG 2 cut(s) 262, 274
BseBI CCWGG 2 cut(s) 60, 345
BseDI CCNNGG 4 cut(s) 204, 343, 523, 987
BseGI GGATG 2 cut(s) 157, 279
BseLI CCNNNNNNNGG 5 cut(s) 59, 233, 344, 583, 704
BseMI GCAATG 2 cut(s) 262, 274
BseMII CTCAG 2 cut(s) 343, 1091
BseNI ACTGG 1 cut(s) 601
BseRI GAGGAG 3 cut(s) 119, 864, 1040
BseXI GCAGC 2 cut(s) 524, 817
Bsh1285I CGRYCG 2 cut(s) 238, 1090
BshFI GGCC 5 cut(s) 63, 209, 450, 679, 1040
BsiEI CGRYCG 2 cut(s) 238, 1090
BsiHKAI GWGCWC 1 cut(s) 810
BsiHKCI CYCGRG 1 cut(s) 297
BsiSI CCGG 3 cut(s) 234, 947, 1086
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 5 cut(s) 59, 233, 344, 583, 704
BsmAI GTCTC 2 cut(s) 637, 846
BsmFI GGGAC 1 cut(s) 469
BsnI GGCC 5 cut(s) 63, 209, 450, 679, 1040
Bso31I GGTCTC 1 cut(s) 637
BsoBI CYCGRG 1 cut(s) 297
Bsp1286I GDGCHC 1 cut(s) 810
Bsp143I GATC 3 cut(s) 21, 94, 941
Bsp1720I GCTNAGC 1 cut(s) 1100
BspACI CCGC 6 cut(s) 227, 253, 653, 680, 705, 863
BspANI GGCC 5 cut(s) 63, 209, 450, 679, 1040
BspCNI CTCAG 2 cut(s) 342, 1092
BspLI GGNNCC 3 cut(s) 105, 410, 1094
BspMI ACCTGC 1 cut(s) 937
BspOI GCTAGC 1 cut(s) 233
BspPI GGATC 1 cut(s) 949
BspTI CTTAAG 1 cut(s) 188
BspTNI GGTCTC 1 cut(s) 637
BsrDI GCAATG 2 cut(s) 262, 274
BsrFI RCCGGY 3 cut(s) 233, 946, 1085
BsrI ACTGG 1 cut(s) 601
BssAI RCCGGY 3 cut(s) 233, 946, 1085
BssECI CCNNGG 4 cut(s) 204, 343, 523, 987
BssMI GATC 3 cut(s) 21, 94, 941
BssT1I CCWWGG 1 cut(s) 987
Bst2UI CCWGG 2 cut(s) 60, 345
Bst4CI ACNGT 1 cut(s) 45
Bst6I CTCTTC 2 cut(s) 137, 578
BstAFI CTTAAG 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 231
BstDEI CTNAG 3 cut(s) 329, 869, 1100
BstDSI CCRYGG 1 cut(s) 523
BstF5I GGATG 2 cut(s) 157, 279
BstKTI GATC 3 cut(s) 24, 97, 944
BstMAI GTCTC 2 cut(s) 637, 846
BstMBI GATC 3 cut(s) 21, 94, 941
BstMCI CGRYCG 2 cut(s) 238, 1090
BstMWI GCNNNNNNNGC 3 cut(s) 69, 518, 879
BstNI CCWGG 2 cut(s) 60, 345
BstSCI CCNGG 2 cut(s) 58, 343
BstV1I GCAGC 2 cut(s) 524, 817
BstV2I GAAGAC 1 cut(s) 39
BsuRI GGCC 5 cut(s) 63, 209, 450, 679, 1040
BtgI CCRYGG 1 cut(s) 523
BtgZI GCGATG 1 cut(s) 502
BtsCI GGATG 2 cut(s) 157, 279
BtsIMutI CAGTG 2 cut(s) 434, 950
BveI ACCTGC 1 cut(s) 937
Cac8I GCNNGC 1 cut(s) 231
Cfr10I RCCGGY 3 cut(s) 233, 946, 1085
Cfr13I GGNCC 3 cut(s) 208, 409, 1093
Csp6I GTAC 3 cut(s) 695, 775, 866
CviAII CATG 5 cut(s) 110, 364, 856, 979, 1036
CviQI GTAC 3 cut(s) 695, 775, 866
DdeI CTNAG 3 cut(s) 329, 869, 1100
DpnI GATC 3 cut(s) 23, 96, 943
DpnII GATC 3 cut(s) 21, 94, 941
EaeI YGGCCR 4 cut(s) 61, 448, 677, 1038
Eam1104I CTCTTC 2 cut(s) 137, 578
EarI CTCTTC 2 cut(s) 137, 578
Eco130I CCWWGG 1 cut(s) 987
Eco31I GGTCTC 1 cut(s) 637
Eco47I GGWCC 2 cut(s) 409, 1093
Eco57I CTGAAG 1 cut(s) 859
Eco88I CYCGRG 1 cut(s) 297
EcoO109I RGGNCCY 2 cut(s) 208, 1093
EcoRII CCWGG 2 cut(s) 58, 343
EcoT14I CCWWGG 1 cut(s) 987
EcoT22I ATGCAT 2 cut(s) 159, 458
ErhI CCWWGG 1 cut(s) 987
FaeI CATG 5 cut(s) 113, 367, 859, 982, 1039
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 1 cut(s) 469
FatI CATG 5 cut(s) 109, 363, 855, 978, 1035
FauI CCCGC 2 cut(s) 234, 698
FauNDI CATATG 2 cut(s) 661, 1012
FbaI TGATCA 1 cut(s) 94
FblI GTMKAC 2 cut(s) 114, 925
Fnu4HI GCNGC 3 cut(s) 513, 680, 831
FokI GGATG 2 cut(s) 144, 266
Fsp4HI GCNGC 3 cut(s) 513, 680, 831
FspBI CTAG 2 cut(s) 230, 968
GluI GCNGC 3 cut(s) 513, 680, 831
GsuI CTGGAG 1 cut(s) 1065
HaeIII GGCC 5 cut(s) 63, 209, 450, 679, 1040
HapII CCGG 3 cut(s) 234, 947, 1086
Hin1II CATG 5 cut(s) 113, 367, 859, 982, 1039
HinfI GANTC 5 cut(s) 240, 600, 618, 666, 1032
HpaII CCGG 3 cut(s) 234, 947, 1086
HphI GGTGA 5 cut(s) 359, 742, 812, 936, 1007
Hpy166II GTNNAC 3 cut(s) 115, 350, 926
Hpy188I TCNGA 2 cut(s) 205, 322
Hpy188III TCNNGA 2 cut(s) 92, 844
Hpy8I GTNNAC 3 cut(s) 115, 350, 926
Hpy99I CGWCG 1 cut(s) 293
HpyAV CCTTC 1 cut(s) 77
HpyCH4III ACNGT 1 cut(s) 45
HpyCH4IV ACGT 2 cut(s) 288, 494
HpyCH4V TGCA 4 cut(s) 157, 267, 312, 456
HpyF10VI GCNNNNNNNGC 3 cut(s) 69, 518, 879
HpyF3I CTNAG 3 cut(s) 329, 869, 1100
HpySE526I ACGT 2 cut(s) 288, 494
Hsp92II CATG 5 cut(s) 113, 367, 859, 982, 1039
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 3 cut(s) 21, 94, 941
LmnI GCTCC 2 cut(s) 109, 132
Lsp1109I GCAGC 2 cut(s) 524, 817
LweI GCATC 2 cut(s) 166, 288
MaeI CTAG 2 cut(s) 230, 968
MaeII ACGT 2 cut(s) 288, 494
MaeIII GTNAC 2 cut(s) 634, 800
MalI GATC 3 cut(s) 23, 96, 943
MboI GATC 3 cut(s) 21, 94, 941
MboII GAAGA 5 cut(s) 39, 124, 565, 725, 835
MhlI GDGCHC 1 cut(s) 810
MlsI TGGCCA 3 cut(s) 63, 450, 1040
MluCI AATT 7 cut(s) 80, 307, 504, 554, 785, 1043, 1111
MluNI TGGCCA 3 cut(s) 63, 450, 1040
MlyI GAGTC 2 cut(s) 675, 1041
MmeI TCCRAC 3 cut(s) 77, 204, 595
Mox20I TGGCCA 3 cut(s) 63, 450, 1040
Mph1103I ATGCAT 2 cut(s) 159, 458
MscI TGGCCA 3 cut(s) 63, 450, 1040
MseI TTAA 3 cut(s) 189, 354, 1114
MslI CAYNNNNRTG 1 cut(s) 267
Msp20I TGGCCA 3 cut(s) 63, 450, 1040
MspCI CTTAAG 1 cut(s) 188
MspI CCGG 3 cut(s) 234, 947, 1086
MspR9I CCNGG 2 cut(s) 60, 345
MvaI CCWGG 2 cut(s) 60, 345
MwoI GCNNNNNNNGC 3 cut(s) 69, 518, 879
NdeI CATATG 2 cut(s) 661, 1012
NdeII GATC 3 cut(s) 21, 94, 941
NheI GCTAGC 1 cut(s) 229
NlaIII CATG 5 cut(s) 113, 367, 859, 982, 1039
NlaIV GGNNCC 3 cut(s) 105, 410, 1094
NmuCI GTSAC 2 cut(s) 634, 800
NsiI ATGCAT 2 cut(s) 159, 458
PaeR7I CTCGAG 1 cut(s) 297
PcsI WCGNNNNNNNCGW 1 cut(s) 609
PfeI GAWTC 3 cut(s) 240, 600, 618
PflMI CCANNNNNTGG 1 cut(s) 59
PkrI GCNGC 3 cut(s) 514, 681, 832
PleI GAGTC 2 cut(s) 674, 1040
PpsI GAGTC 2 cut(s) 674, 1040
PpuMI RGGWCCY 1 cut(s) 1093
Psp5II RGGWCCY 1 cut(s) 1093
Psp6I CCWGG 2 cut(s) 58, 343
PspGI CCWGG 2 cut(s) 58, 343
PspN4I GGNNCC 3 cut(s) 105, 410, 1094
PspPI GGNCC 3 cut(s) 208, 409, 1093
PspPPI RGGWCCY 1 cut(s) 1093
PspXI VCTCGAGB 1 cut(s) 297
RsaI GTAC 3 cut(s) 696, 776, 867
RsaNI GTAC 3 cut(s) 695, 775, 866
RseI CAYNNNNRTG 1 cut(s) 267
SaqAI TTAA 3 cut(s) 189, 354, 1114
SatI GCNGC 3 cut(s) 513, 680, 831
Sau3AI GATC 3 cut(s) 21, 94, 941
Sau96I GGNCC 3 cut(s) 208, 409, 1093
ScaI AGTACT 1 cut(s) 776
SchI GAGTC 2 cut(s) 675, 1041
ScrFI CCNGG 2 cut(s) 60, 345
SduI GDGCHC 1 cut(s) 810
SfaNI GCATC 2 cut(s) 166, 288
Sfr274I CTCGAG 1 cut(s) 297
SinI GGWCC 2 cut(s) 409, 1093
SlaI CTCGAG 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 267
SmlI CTYRAG 2 cut(s) 188, 297
SmoI CTYRAG 2 cut(s) 188, 297
Sse9I AATT 7 cut(s) 80, 307, 504, 554, 785, 1043, 1111
SsiI CCGC 6 cut(s) 227, 253, 653, 680, 705, 863
SspMI CTAG 2 cut(s) 230, 968
StyD4I CCNGG 2 cut(s) 58, 343
StyI CCWWGG 1 cut(s) 987
TaaI ACNGT 1 cut(s) 45
TaiI ACGT 2 cut(s) 291, 497
TaqI TCGA 5 cut(s) 238, 291, 298, 603, 669
TasI AATT 7 cut(s) 80, 307, 504, 554, 785, 1043, 1111
TatI WGTACW 1 cut(s) 774
TauI GCSGC 1 cut(s) 682
TfiI GAWTC 3 cut(s) 240, 600, 618
Tru1I TTAA 3 cut(s) 189, 354, 1114
Tru9I TTAA 3 cut(s) 189, 354, 1114
TscAI CASTG 2 cut(s) 434, 957
TseFI GTSAC 2 cut(s) 634, 800
TseI GCWGC 2 cut(s) 512, 830
Tsp45I GTSAC 2 cut(s) 634, 800
TspDTI ATGAA 7 cut(s) 17, 153, 247, 352, 648, 836, 967
TspRI CASTG 2 cut(s) 434, 957
Van91I CCANNNNNTGG 1 cut(s) 59
Vha464I CTTAAG 1 cut(s) 188
VpaK11BI GGWCC 2 cut(s) 409, 1093
XapI RAATTY 2 cut(s) 504, 1043
XhoI CTCGAG 1 cut(s) 297
XmiI GTMKAC 2 cut(s) 114, 925
XspI CTAG 2 cut(s) 230, 968
ZrmI AGTACT 1 cut(s) 776
Zsp2I ATGCAT 2 cut(s) 159, 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.