Rmu_sc0002489.1_g000024

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002489.1
OG0000622
Physical Location & Seq
Reverse (-)
75779 .. 76135
357 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002489.1_g000024.1.cds

Sequence Viewer

Length: 357 bp
atgaggaaggtacaagaagaaatagacaagattgacaatcactacatgaaaggtctacaacaaggtgatgagcacttgagtgagcttaatgaaagtgttgatagtgttttcagtggagagctgattacatttagcttcagtagtttctgcagatttcctctgtatgataatgattttggttgggggaagcctacgtgggtatcgtcaccaccactgaccttcaagaacctagtggttttcatggataccaaagaggctgatagaatagaggcacatattagtttggaggaggaagtcatggttaagtttgaaactgatatcgagttcttggcttatgcgtctccaagtgggtgctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

118

Amino Acids

13.57

Weight (kDa)

4.46

Isoelectric Point (pI)

56.33

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 55
AcuI CTGAAG 1 cut(s) 121
AfaI GTAC 1 cut(s) 12
AgsI TTSAA 2 cut(s) 223, 311
AleI CACNNNNGTG 1 cut(s) 78
AluBI AGCT 3 cut(s) 85, 121, 135
AluI AGCT 3 cut(s) 85, 121, 135
Alw21I GWGCWC 1 cut(s) 75
Alw26I GTCTC 1 cut(s) 345
AsuHPI GGTGA 2 cut(s) 77, 198
BaeI ACNNNNGTAYC 2 cut(s) 183, 216
Bbv12I GWGCWC 1 cut(s) 75
BciVI GTATCC 1 cut(s) 238
BcoDI GTCTC 1 cut(s) 345
BfaI CTAG 1 cut(s) 230
BfmI CTRYAG 1 cut(s) 148
BfuI GTATCC 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 97
BsaAI YACGTR 1 cut(s) 195
BseRI GAGGAG 1 cut(s) 302
BsiHKAI GWGCWC 1 cut(s) 75
BsmAI GTCTC 1 cut(s) 345
BsmBI CGTCTC 1 cut(s) 345
Bsp1286I GDGCHC 1 cut(s) 75
BspMAI CTGCAG 1 cut(s) 152
BstBAI YACGTR 1 cut(s) 195
BstMAI GTCTC 1 cut(s) 345
BstSFI CTRYAG 1 cut(s) 148
BsuI GTATCC 1 cut(s) 238
BtsIMutI CAGTG 2 cut(s) 118, 212
CseI GACGC 1 cut(s) 327
Csp6I GTAC 1 cut(s) 11
CviAII CATG 3 cut(s) 46, 241, 298
CviJI RGCY 6 cut(s) 85, 121, 135, 190, 257, 332
CviKI_1 RGCY 6 cut(s) 85, 121, 135, 190, 257, 332
CviQI GTAC 1 cut(s) 11
Eco32I GATATC 1 cut(s) 319
Eco57I CTGAAG 1 cut(s) 121
EcoRV GATATC 1 cut(s) 319
Esp3I CGTCTC 1 cut(s) 345
FaeI CATG 3 cut(s) 49, 244, 301
FaiI YATR 6 cut(s) 47, 165, 242, 276, 299, 336
FatI CATG 3 cut(s) 45, 240, 297
FblI GTMKAC 1 cut(s) 55
FspBI CTAG 1 cut(s) 230
HgaI GACGC 1 cut(s) 327
Hin1II CATG 3 cut(s) 49, 244, 301
HphI GGTGA 2 cut(s) 77, 198
Hpy166II GTNNAC 1 cut(s) 56
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 56
HpyAV CCTTC 1 cut(s) 229
HpyCH4IV ACGT 1 cut(s) 194
HpyCH4V TGCA 1 cut(s) 150
HpySE526I ACGT 1 cut(s) 194
Hsp92II CATG 3 cut(s) 49, 244, 301
MaeI CTAG 1 cut(s) 230
MaeII ACGT 1 cut(s) 194
MaeIII GTNAC 1 cut(s) 204
MboII GAAGA 1 cut(s) 29
MhlI GDGCHC 1 cut(s) 75
MnlI CCTC 5 cut(s) 168, 247, 262, 280, 283
MseI TTAA 2 cut(s) 87, 303
MslI CAYNNNNRTG 1 cut(s) 78
NlaIII CATG 3 cut(s) 49, 244, 301
NmuCI GTSAC 1 cut(s) 204
OliI CACNNNNGTG 1 cut(s) 78
PcsI WCGNNNNNNNCGW 1 cut(s) 200
Ppu21I YACGTR 1 cut(s) 195
PstI CTGCAG 1 cut(s) 152
RsaI GTAC 1 cut(s) 12
RsaNI GTAC 1 cut(s) 11
RseI CAYNNNNRTG 1 cut(s) 78
SaqAI TTAA 2 cut(s) 87, 303
SduI GDGCHC 1 cut(s) 75
SetI ASST 9 cut(s) 12, 55, 67, 87, 123, 137, 197, 221, 231
SfcI CTRYAG 1 cut(s) 148
SmiMI CAYNNNNRTG 1 cut(s) 78
SmlI CTYRAG 1 cut(s) 76
SmoI CTYRAG 1 cut(s) 76
SspMI CTAG 1 cut(s) 230
TaiI ACGT 1 cut(s) 197
TaqI TCGA 1 cut(s) 321
Tru1I TTAA 2 cut(s) 87, 303
Tru9I TTAA 2 cut(s) 87, 303
TscAI CASTG 2 cut(s) 118, 219
TseFI GTSAC 1 cut(s) 204
Tsp45I GTSAC 1 cut(s) 204
TspDTI ATGAA 3 cut(s) 62, 105, 229
TspRI CASTG 2 cut(s) 118, 219
XmiI GTMKAC 1 cut(s) 55
XspI CTAG 1 cut(s) 230
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.