RLG00000007911

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000622
Physical Location & Seq
Reverse (-)
22763888 .. 22765164
1277 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007911

Sequence Viewer

Length: 1197 bp
ATGATGAAGTTAGAAGCTGAAATAATCTCCAAACAGATTATCACTCCTTCTTCTCCAACCCCTGACCATCTTCGCCATTACCAGTTCTCATTTCTTGATCAAATATCTCCCCCCACCTCCTTAGCCAAAGTCTTAACCCTTTTCTACCCACTAGCCGGACGACTCAATGGCAACCAACACGTGGATTGCAACGACAATGCTATACCCTACCTTGAAGCTCAAGTGAACTGCAAACTCTCAGATGTTCTCGACAATCCGATACCCGGAGAACTCAACAAGCTCATGCCATTTGAACTGGACGATGTGGCAAACAAATTTGCCCTCGGTATCCAGCTCAACATCTTTCAATGTGGTGGTTTTGCTATTGCTCAGTGCCTTTCTCACAAGCTCGCAGATGGGTTATCATACTTCACGTTCAGCAAAACTTGGGCCGCCACTGCCCGTGGCGAACCCAACATAGCACATCCGCAGTTCATTTCCGCCACACTATTCCCTCCCAAGAATTTAAGTGGATTTGATGCGCGCACTGGTATCACAAGAAACAAAGTGACAAAACGCTTTGTGTTTAGTGCCTCTAACATAGAGGAGCTCAGAAAAGTTCAAGCACATAAGAACTTAACACGCCCTTCGCGTGTTGAGGCCTTATCTTCTTTCATCTTGAGCCGATTTATGGAGGCTACGAAAGATATTGGATCAGCTGACAAGTTTTACAGGGTGGTTCATGCTGTGAACTTGCGGCCAAGGTTCGACCCACCACTGCCGCACCATTCCTTTGGGAACCTTGACCGAATAGCCATGACAGCACCGTTACAAATAGGTTCCAGGGAACCATATCATGGTATACGAGAAGTGATAAGCAAGATCGACAATGAGTACGTGAGAAAACTGCAGAAAGGTGATGAGCATTTGAGTTCCATCAAGACCCATGCTAAAAGTTTTGCTAAAGGCGAGCAGGTTATAATTAGCTTCAGTAGTTATTGCTGGTTTCCTATGTACGATAACGATTTTGGTTGGGGGAGGCCTACGTGGGTGGGGTCACCGGCACTGACGTTCAAGAACCTAGTGAACTTCATGGATACCAAAGAGGGTGGTGGAATTGAGGCTTATATTAGCTTGGAGGAGGAAGTCATGACTAAGTTTGAGAGCGATGTGGGGCTCTTAGCTCATGTGTCTCCAGGTGCGGTGCTGAACGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

399

Amino Acids

44.48

Weight (kDa)

7.71

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 39 - 384 1.3e-57 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 959
Acc36I ACCTGC 1 cut(s) 943
AccB7I CCANNNNNTGG 2 cut(s) 181, 836
AccI GTMKAC 1 cut(s) 841
AccII CGCG 2 cut(s) 523, 631
AciI CCGC 6 cut(s) 432, 467, 480, 736, 761, 1181
AclWI GGATC 1 cut(s) 700
AcoI YGGCCR 1 cut(s) 737
AcsI RAATTY 2 cut(s) 314, 502
AcuI CTGAAG 1 cut(s) 952
AcvI CACGTG 1 cut(s) 181
AfaI GTAC 2 cut(s) 875, 995
AfiI CCNNNNNNNGG 5 cut(s) 155, 181, 263, 670, 836
AflIII ACRYGT 1 cut(s) 178
AgsI TTSAA 5 cut(s) 215, 293, 347, 602, 1054
AjnI CCWGG 2 cut(s) 821, 1174
Alw21I GWGCWC 1 cut(s) 591
Alw26I GTCTC 1 cut(s) 1176
AlwI GGATC 1 cut(s) 700
AoxI GGCC 4 cut(s) 429, 639, 737, 1019
ApoI RAATTY 2 cut(s) 314, 502
AspLEI GCGC 2 cut(s) 523, 525
AspS9I GGNCC 1 cut(s) 429
AsuC2I CCSGG 1 cut(s) 264
AsuHPI GGTGA 2 cut(s) 908, 1029
BanII GRGCYC 2 cut(s) 591, 1158
BbrPI CACGTG 1 cut(s) 181
Bbv12I GWGCWC 1 cut(s) 591
BccI CCATC 3 cut(s) 75, 389, 923
BciT130I CCWGG 2 cut(s) 823, 1176
BciVI GTATCC 2 cut(s) 338, 1069
BclI TGATCA 1 cut(s) 97
BcnI CCSGG 1 cut(s) 264
BcoDI GTCTC 1 cut(s) 1176
BfaI CTAG 2 cut(s) 152, 1061
BfmI CTRYAG 1 cut(s) 887
BfuAI ACCTGC 1 cut(s) 943
BfuI GTATCC 2 cut(s) 338, 1069
BisI GCNGC 3 cut(s) 432, 737, 761
BlsI GCNGC 3 cut(s) 433, 738, 762
Bme1390I CCNGG 3 cut(s) 264, 823, 1176
BmgT120I GGNCC 1 cut(s) 429
BmiI GGNNCC 3 cut(s) 779, 820, 828
BmrFI CCNGG 3 cut(s) 264, 823, 1176
BmsI GCATC 1 cut(s) 508
BpmI CTGGAG 1 cut(s) 1158
Bpu10I CCTNAGC 1 cut(s) 121
BpuEI CTTGAG 2 cut(s) 204, 679
BpuMI CCSGG 1 cut(s) 264
BsaAI YACGTR 3 cut(s) 181, 877, 1026
BsaJI CCNNGG 4 cut(s) 322, 442, 740, 822
Bsc4I CCNNNNNNNGG 5 cut(s) 155, 181, 263, 670, 836
Bse118I RCCGGY 1 cut(s) 1039
Bse1I ACTGG 3 cut(s) 82, 300, 532
BseBI CCWGG 2 cut(s) 823, 1176
BseDI CCNNGG 4 cut(s) 322, 442, 740, 822
BseGI GGATG 1 cut(s) 463
BseLI CCNNNNNNNGG 5 cut(s) 155, 181, 263, 670, 836
BseMII CTCAG 3 cut(s) 252, 383, 604
BseNI ACTGG 3 cut(s) 82, 300, 532
BsePI GCGCGC 1 cut(s) 521
BseRI GAGGAG 2 cut(s) 599, 1133
Bsh1236I CGCG 2 cut(s) 523, 631
BshFI GGCC 4 cut(s) 431, 641, 739, 1021
BsiHKAI GWGCWC 1 cut(s) 591
BsiSI CCGG 3 cut(s) 156, 264, 1040
BslI CCNNNNNNNGG 5 cut(s) 155, 181, 263, 670, 836
BsmAI GTCTC 1 cut(s) 1176
BsnI GGCC 4 cut(s) 431, 641, 739, 1021
Bsp1286I GDGCHC 2 cut(s) 591, 1158
Bsp143I GATC 3 cut(s) 97, 692, 861
BspACI CCGC 6 cut(s) 432, 467, 480, 736, 761, 1181
BspANI GGCC 4 cut(s) 431, 641, 739, 1021
BspCNI CTCAG 3 cut(s) 251, 382, 603
BspFNI CGCG 2 cut(s) 523, 631
BspHI TCATGA 1 cut(s) 1128
BspLI GGNNCC 3 cut(s) 779, 820, 828
BspMAI CTGCAG 1 cut(s) 891
BspMI ACCTGC 1 cut(s) 943
BspPI GGATC 1 cut(s) 700
BsrFI RCCGGY 1 cut(s) 1039
BsrI ACTGG 3 cut(s) 82, 300, 532
BssAI RCCGGY 1 cut(s) 1039
BssECI CCNNGG 4 cut(s) 322, 442, 740, 822
BssHII GCGCGC 1 cut(s) 521
BssMI GATC 3 cut(s) 97, 692, 861
BssNAI GTATAC 1 cut(s) 842
BssT1I CCWWGG 1 cut(s) 740
Bst1107I GTATAC 1 cut(s) 842
Bst2UI CCWGG 2 cut(s) 823, 1176
Bst4CI ACNGT 1 cut(s) 807
BstBAI YACGTR 3 cut(s) 181, 877, 1026
BstC8I GCNNGC 3 cut(s) 390, 523, 950
BstDEI CTNAG 6 cut(s) 121, 238, 369, 590, 1134, 1159
BstDSI CCRYGG 1 cut(s) 442
BstEII GGTNACC 1 cut(s) 1035
BstF5I GGATG 1 cut(s) 463
BstFNI CGCG 2 cut(s) 523, 631
BstHHI GCGC 2 cut(s) 523, 525
BstKTI GATC 3 cut(s) 100, 695, 864
BstMAI GTCTC 1 cut(s) 1176
BstMBI GATC 3 cut(s) 97, 692, 861
BstMWI GCNNNNNNNGC 2 cut(s) 437, 800
BstNI CCWGG 2 cut(s) 823, 1176
BstPI GGTNACC 1 cut(s) 1035
BstSCI CCNGG 3 cut(s) 262, 821, 1174
BstSFI CTRYAG 1 cut(s) 887
BstUI CGCG 2 cut(s) 523, 631
BstXI CCANNNNNNTGG 1 cut(s) 773
BstZ17I GTATAC 1 cut(s) 842
BsuI GTATCC 2 cut(s) 338, 1069
BsuRI GGCC 4 cut(s) 431, 641, 739, 1021
BtgI CCRYGG 1 cut(s) 442
BtgZI GCGATG 1 cut(s) 1161
BtsCI GGATG 1 cut(s) 463
BtsI GCAGTG 2 cut(s) 435, 755
BtsIMutI CAGTG 5 cut(s) 377, 435, 525, 755, 1043
BveI ACCTGC 1 cut(s) 943
Cac8I GCNNGC 3 cut(s) 390, 523, 950
CciI TCATGA 1 cut(s) 1128
CfoI GCGC 2 cut(s) 523, 525
Cfr10I RCCGGY 1 cut(s) 1039
Cfr13I GGNCC 1 cut(s) 429
Csp6I GTAC 2 cut(s) 874, 994
CspCI CAANNNNNGTGG 2 cut(s) 1069, 1104
CviAII CATG 8 cut(s) 283, 722, 796, 836, 926, 1072, 1129, 1166
CviQI GTAC 2 cut(s) 874, 994
DdeI CTNAG 6 cut(s) 121, 238, 369, 590, 1134, 1159
DpnI GATC 3 cut(s) 99, 694, 863
DpnII GATC 3 cut(s) 97, 692, 861
EaeI YGGCCR 1 cut(s) 737
EciI GGCGGA 1 cut(s) 469
Ecl136II GAGCTC 1 cut(s) 589
Eco130I CCWWGG 1 cut(s) 740
Eco147I AGGCCT 2 cut(s) 641, 1021
Eco24I GRGCYC 2 cut(s) 591, 1158
Eco53kI GAGCTC 1 cut(s) 589
Eco57I CTGAAG 1 cut(s) 952
Eco72I CACGTG 1 cut(s) 181
Eco91I GGTNACC 1 cut(s) 1035
EcoICRI GAGCTC 1 cut(s) 589
EcoO65I GGTNACC 1 cut(s) 1035
EcoRII CCWGG 2 cut(s) 821, 1174
EcoT14I CCWWGG 1 cut(s) 740
EcoT38I GRGCYC 2 cut(s) 591, 1158
ErhI CCWWGG 1 cut(s) 740
FaeI CATG 8 cut(s) 286, 725, 799, 839, 929, 1075, 1132, 1169
FatI CATG 8 cut(s) 282, 721, 795, 835, 925, 1071, 1128, 1165
FbaI TGATCA 1 cut(s) 97
FblI GTMKAC 1 cut(s) 841
Fnu4HI GCNGC 3 cut(s) 432, 737, 761
FokI GGATG 1 cut(s) 450
FriOI GRGCYC 2 cut(s) 591, 1158
Fsp4HI GCNGC 3 cut(s) 432, 737, 761
FspBI CTAG 2 cut(s) 152, 1061
GlaI GCGC 2 cut(s) 522, 524
GluI GCNGC 3 cut(s) 432, 737, 761
GsuI CTGGAG 1 cut(s) 1158
HaeIII GGCC 4 cut(s) 431, 641, 739, 1021
HapII CCGG 3 cut(s) 156, 264, 1040
HhaI GCGC 2 cut(s) 523, 525
Hin1II CATG 8 cut(s) 286, 725, 799, 839, 929, 1075, 1132, 1169
Hin6I GCGC 2 cut(s) 521, 523
HinP1I GCGC 2 cut(s) 521, 523
HinfI GANTC 1 cut(s) 162
HpaII CCGG 3 cut(s) 156, 264, 1040
HphI GGTGA 2 cut(s) 908, 1029
Hpy166II GTNNAC 4 cut(s) 226, 730, 842, 1066
Hpy188I TCNGA 3 cut(s) 241, 258, 593
Hpy188III TCNNGA 6 cut(s) 95, 248, 658, 919, 1054, 1129
Hpy8I GTNNAC 4 cut(s) 226, 730, 842, 1066
HpyAV CCTTC 2 cut(s) 57, 636
HpyCH4III ACNGT 1 cut(s) 807
HpyCH4IV ACGT 6 cut(s) 180, 413, 876, 1025, 1049, 1191
HpyCH4V TGCA 3 cut(s) 189, 231, 889
HpyF10VI GCNNNNNNNGC 2 cut(s) 437, 800
HpyF3I CTNAG 6 cut(s) 121, 238, 369, 590, 1134, 1159
HpySE526I ACGT 6 cut(s) 180, 413, 876, 1025, 1049, 1191
Hsp92II CATG 8 cut(s) 286, 725, 799, 839, 929, 1075, 1132, 1169
HspAI GCGC 2 cut(s) 521, 523
Ksp22I TGATCA 1 cut(s) 97
Kzo9I GATC 3 cut(s) 97, 692, 861
LmnI GCTCC 1 cut(s) 586
LweI GCATC 1 cut(s) 508
MaeI CTAG 2 cut(s) 152, 1061
MaeII ACGT 6 cut(s) 180, 413, 876, 1025, 1049, 1191
MaeIII GTNAC 3 cut(s) 547, 807, 1035
MalI GATC 3 cut(s) 99, 694, 863
MboI GATC 3 cut(s) 97, 692, 861
MboII GAAGA 3 cut(s) 42, 62, 639
MhlI GDGCHC 2 cut(s) 591, 1158
MluCI AATT 4 cut(s) 314, 502, 960, 1095
MlyI GAGTC 1 cut(s) 156
MmeI TCCRAC 1 cut(s) 80
MseI TTAA 3 cut(s) 134, 506, 617
MspA1I CMGCKG 1 cut(s) 698
MspI CCGG 3 cut(s) 156, 264, 1040
MspR9I CCNGG 3 cut(s) 264, 823, 1176
MvaI CCWGG 2 cut(s) 823, 1176
MvnI CGCG 2 cut(s) 523, 631
MwoI GCNNNNNNNGC 2 cut(s) 437, 800
NciI CCSGG 1 cut(s) 264
NdeII GATC 3 cut(s) 97, 692, 861
NlaIII CATG 8 cut(s) 286, 725, 799, 839, 929, 1075, 1132, 1169
NlaIV GGNNCC 3 cut(s) 779, 820, 828
NmuCI GTSAC 2 cut(s) 547, 1035
PagI TCATGA 1 cut(s) 1128
PauI GCGCGC 1 cut(s) 521
PceI AGGCCT 2 cut(s) 641, 1021
PcsI WCGNNNNNNNCGW 1 cut(s) 628
PflMI CCANNNNNTGG 2 cut(s) 181, 836
PkrI GCNGC 3 cut(s) 433, 738, 762
PleI GAGTC 1 cut(s) 156
PmaCI CACGTG 1 cut(s) 181
PmlI CACGTG 1 cut(s) 181
PpsI GAGTC 1 cut(s) 156
Ppu21I YACGTR 3 cut(s) 181, 877, 1026
PsiI TTATAA 1 cut(s) 959
Psp124BI GAGCTC 1 cut(s) 591
Psp6I CCWGG 2 cut(s) 821, 1174
PspCI CACGTG 1 cut(s) 181
PspEI GGTNACC 1 cut(s) 1035
PspGI CCWGG 2 cut(s) 821, 1174
PspN4I GGNNCC 3 cut(s) 779, 820, 828
PspPI GGNCC 1 cut(s) 429
PstI CTGCAG 1 cut(s) 891
PteI GCGCGC 1 cut(s) 521
PvuII CAGCTG 1 cut(s) 698
RsaI GTAC 2 cut(s) 875, 995
RsaNI GTAC 2 cut(s) 874, 994
SacI GAGCTC 1 cut(s) 591
SaqAI TTAA 3 cut(s) 134, 506, 617
SatI GCNGC 3 cut(s) 432, 737, 761
Sau3AI GATC 3 cut(s) 97, 692, 861
Sau96I GGNCC 1 cut(s) 429
SchI GAGTC 1 cut(s) 156
ScrFI CCNGG 3 cut(s) 264, 823, 1176
SduI GDGCHC 2 cut(s) 591, 1158
SfaNI GCATC 1 cut(s) 508
SfcI CTRYAG 1 cut(s) 887
SmlI CTYRAG 2 cut(s) 219, 658
SmoI CTYRAG 2 cut(s) 219, 658
Sse9I AATT 4 cut(s) 314, 502, 960, 1095
SseBI AGGCCT 2 cut(s) 641, 1021
SsiI CCGC 6 cut(s) 432, 467, 480, 736, 761, 1181
SspMI CTAG 2 cut(s) 152, 1061
SstI GAGCTC 1 cut(s) 591
StuI AGGCCT 2 cut(s) 641, 1021
StyD4I CCNGG 3 cut(s) 262, 821, 1174
StyI CCWWGG 1 cut(s) 740
TaaI ACNGT 1 cut(s) 807
TaiI ACGT 6 cut(s) 183, 416, 879, 1028, 1052, 1194
TaqI TCGA 3 cut(s) 249, 747, 864
TaqII GACCGA 1 cut(s) 801
TasI AATT 4 cut(s) 314, 502, 960, 1095
TauI GCSGC 3 cut(s) 434, 739, 763
Tru1I TTAA 3 cut(s) 134, 506, 617
Tru9I TTAA 3 cut(s) 134, 506, 617
TscAI CASTG 5 cut(s) 377, 442, 532, 762, 1050
TseFI GTSAC 2 cut(s) 547, 1035
Tsp45I GTSAC 2 cut(s) 547, 1035
TspDTI ATGAA 5 cut(s) 20, 463, 643, 710, 1060
TspRI CASTG 5 cut(s) 377, 442, 532, 762, 1050
Van91I CCANNNNNTGG 2 cut(s) 181, 836
XapI RAATTY 2 cut(s) 314, 502
XmiI GTMKAC 1 cut(s) 841
XspI CTAG 2 cut(s) 152, 1061
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.