Prupe.1G235900_v2.0.a1

Vinorine synthase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0000622
Physical Location & Seq
Forward (+)
24953898 .. 24970588
16691 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G235900.1

Sequence Viewer

Length: 219 bp
ATGAAGGTTGAGGTTGAAGTGATCTCCAAGGAGATTATCAAGCCATCATCTCCAACCCCTGACCATCTTCGCTATTTGCAGCTCTCTTTTCTTGATCAACTAGCTCCCCCAGTCTATAACCCTTTTGTCCTCTTTTATGAATTCAATGGCGAGGTAACAGACAGGATACTTGGAATTGATGGAAAATTATTGGAATTGACGGAATGTTATCGGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko00941 ko00945 ko01100 ko01110 map00940 map00941 map00945 map01100 map01110
Pfam Domains
Protein Families
Transferase

Protein Analysis

73

Amino Acids

8.34

Weight (kDa)

4.75

Isoelectric Point (pI)

40.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000622)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g24710 FvH4_4g24720 FvH4_4g24770 FvH4_4g24771 FvH4_4g24772 FvH4_5g39380
malus_domestica MD10G1199500.v1.1 MD13G1109100.v1.1 MD13G1109200.v1.1 MD13G1114400.v1.1 MD13G1114800.v1.1 MD16G1108800.v1.1
prunus_persica Prupe.1G235900_v2.0.a1 Prupe.1G236600_v2.0.a1 Prupe.1G236700_v2.0.a1 Prupe.1G236800_v2.0.a1 Prupe.4G142000_v2.0.a1
pyrus_communis pycom10g17180 pycom13g09460 pycom13g09930 pycom13g09940
rosa_chinensis RchiOBHm_Chr3g0490281 RchiOBHm_Chr3g0490291 RchiOBHm_Chr3g0490301 RchiOBHm_Chr4g0417441 RchiOBHm_Chr4g0417461 RchiOBHm_Chr4g0431811 RchiOBHm_Chr4g0431821 RchiOBHm_Chr4g0431851
rosa_laevigata RLG00000006882 RLG00000006886 RLG00000006887 RLG00000007905 RLG00000007911 RLG00000007913 RLG00000029538
rosa_multiflora Rmu_sc0001459.1_g000008 Rmu_sc0001459.1_g000011 Rmu_sc0002489.1_g000020 Rmu_sc0002489.1_g000024 Rmu_sc0002489.1_g000027 Rmu_sc0002489.1_g000028 Rmu_sc0002489.1_g000029 Rmu_sc0004142.1_g000001 Rmu_sc0004142.1_g000024 Rmu_sc0011237.1_g000018 Rmu_sc0031439.1_g000001 Rmu_sc0031677.1_g000001 Rmu_ssc0000361.1_g000005
rosa_roxburghii Rroxscaffold_3G00262760 Rroxscaffold_4G00317310 Rroxscaffold_5G00361150 Rroxscaffold_5G00373190 Rroxscaffold_5G00373210 Rroxscaffold_5G00373220 Rroxscaffold_5G00373240
rosa_rugosa Rorug01G0111100 Rorug04G0252400 Rorug04G0252400 Rorug04G0252400 Rorug04G0252600
rosa_samantha Rh1BG102300 Rh3AG292200 Rh3AG292300 Rh4AG309100 Rh4AG309300 Rh4AG309500 Rh6BG200900
rosa_wichuraiana Rw0G002990 Rw0G003000 Rw0G019170 Rw3G025890 Rw3G025900 Rw4G017830 Rw4G026810 Rw4G026870 Rw4G026880 Rw4G026920 Rw6G017190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 140
AgsI TTSAA 2 cut(s) 17, 145
AluBI AGCT 2 cut(s) 82, 104
AluI AGCT 2 cut(s) 82, 104
ApeKI GCWGC 1 cut(s) 79
ApoI RAATTY 1 cut(s) 140
BbvI GCAGC 1 cut(s) 91
BccI CCATC 3 cut(s) 52, 72, 173
BciVI GTATCC 1 cut(s) 159
BclI TGATCA 1 cut(s) 94
BfaI CTAG 1 cut(s) 101
BfuI GTATCC 1 cut(s) 159
BisI GCNGC 1 cut(s) 80
BlsI GCNGC 1 cut(s) 81
BmrI ACTGGG 1 cut(s) 104
BmuI ACTGGG 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 27
Bse1I ACTGG 1 cut(s) 110
BseDI CCNNGG 1 cut(s) 27
BseNI ACTGG 1 cut(s) 110
BseXI GCAGC 1 cut(s) 91
Bsp143I GATC 2 cut(s) 21, 94
BsrI ACTGG 1 cut(s) 110
BssECI CCNNGG 1 cut(s) 27
BssMI GATC 2 cut(s) 21, 94
BssT1I CCWWGG 1 cut(s) 27
BstKTI GATC 2 cut(s) 24, 97
BstMBI GATC 2 cut(s) 21, 94
BstV1I GCAGC 1 cut(s) 91
BsuI GTATCC 1 cut(s) 159
CviJI RGCY 3 cut(s) 43, 82, 104
CviKI_1 RGCY 3 cut(s) 43, 82, 104
DpnI GATC 2 cut(s) 23, 96
DpnII GATC 2 cut(s) 21, 94
Eco130I CCWWGG 1 cut(s) 27
EcoRI GAATTC 1 cut(s) 140
EcoT14I CCWWGG 1 cut(s) 27
ErhI CCWWGG 1 cut(s) 27
FaiI YATR 2 cut(s) 117, 138
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 80
Fsp4HI GCNGC 1 cut(s) 80
FspBI CTAG 1 cut(s) 101
GluI GCNGC 1 cut(s) 80
Hpy188I TCNGA 1 cut(s) 213
Hpy188III TCNNGA 1 cut(s) 92
HpyCH4V TGCA 1 cut(s) 79
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 2 cut(s) 21, 94
LmnI GCTCC 1 cut(s) 109
LpnPI CCDG 3 cut(s) 72, 123, 148
Lsp1109I GCAGC 1 cut(s) 91
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 23, 96
MboI GATC 2 cut(s) 21, 94
MboII GAAGA 1 cut(s) 59
MluCI AATT 5 cut(s) 140, 174, 185, 194, 214
MmeI TCCRAC 1 cut(s) 77
MnlI CCTC 3 cut(s) 4, 140, 145
NdeII GATC 2 cut(s) 21, 94
PkrI GCNGC 1 cut(s) 81
SatI GCNGC 1 cut(s) 80
Sau3AI GATC 2 cut(s) 21, 94
SetI ASST 5 cut(s) 9, 15, 84, 106, 156
SgeI CNNG 9 cut(s) 40, 52, 71, 104, 113, 122, 163, 175, 182
Sse9I AATT 5 cut(s) 140, 174, 185, 194, 214
SspMI CTAG 1 cut(s) 101
StyI CCWWGG 1 cut(s) 27
TasI AATT 5 cut(s) 140, 174, 185, 194, 214
TseI GCWGC 1 cut(s) 79
TspDTI ATGAA 2 cut(s) 17, 153
TspGWI ACGGA 1 cut(s) 215
XapI RAATTY 1 cut(s) 140
XspI CTAG 1 cut(s) 101
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.